MD03G1264000.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0017602
Physical Location & Seq
Forward (+)
34951551 .. 34952879
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1264000.v1.1.491

Sequence Viewer

Length: 615 bp
ATGGCTTTCGTGAAGGATTACTCACTGGTTTCTTCCGTGGTAATGGTGGTGGCTTTGTCTGGGGTGTGTTTTGGTGGTACTGTGTACAAGGTGGGTGACTCCCATGGGTGGACAGCCAAAGATGGTTTTAATTACAAGGAATGGGCAGCTAGCAAGACCTTTTATGTTGGAGACACCATCGTTTTTGAGTACAATGCCAAGGAGCATAATGTGGCACAAGTGACCCACGGAAATTTCAAGGCCTGCAACTCAACGGATGCAATCACCACCACCGCCTCCGGCAACGACAGTATAAAGTTGACGAAACCTGAACACTTGTTCTACATTTGCGGTGTCCCCGGTCACTGCCAGGCCGGCCAGAAGGTTGACATCAGAGTTGTTGCTTCATCATCAGGCCCTAATGCATCAAGTCCGATTCACACCCCACCACCCAGTTCTTCAAACCCTAATGCATCAAGTCCGAGTCACACCCCAGCTCCCAGTTCTTCAAACCCTAATGCATCAGTTTCACCTGCTCCTGTCTCATCCGAGAAGAGCAGTGCTCCATTTGTCCAGTCTTCTAATGGGCTACTTATGCTTGTGATGATTATGGGGGTTCTTGCTTCTTTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

205

Amino Acids

21.33

Weight (kDa)

7.04

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 37 - 120 1.5e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23510
malus_domestica MD03G1264000.v1.1
prunus_persica Prupe.8G240400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0290981
rosa_laevigata RLG00000012158
rosa_multiflora Rmu_sc0001577.1_g000019
rosa_roxburghii Rroxscaffold_7G00176490
rosa_rugosa Rorug06G0216900
rosa_samantha Rh6AG326600 Rh6CG340300 Rh6DG327500
rosa_wichuraiana Rw6G028400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 520
AciI CCGC 2 cut(s) 273, 330
AcoI YGGCCR 1 cut(s) 355
AcsI RAATTY 1 cut(s) 232
AfaI GTAC 3 cut(s) 79, 86, 191
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 3 cut(s) 238, 441, 489
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 2 cut(s) 149, 476
AluI AGCT 2 cut(s) 149, 476
Alw21I GWGCWC 1 cut(s) 544
Alw26I GTCTC 2 cut(s) 165, 526
AoxI GGCC 4 cut(s) 240, 351, 355, 394
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 395
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 3 cut(s) 107, 256, 501
AsuNHI GCTAGC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 544
BbvI GCAGC 1 cut(s) 158
BccI CCATC 2 cut(s) 116, 185
BciT130I CCWGG 1 cut(s) 350
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 2 cut(s) 165, 526
BfaI CTAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 520
BglI GCCNNNNNGGC 1 cut(s) 354
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 2 cut(s) 339, 350
BmgT120I GGNCC 1 cut(s) 395
BmrFI CCNGG 2 cut(s) 339, 350
BmrI ACTGGG 2 cut(s) 426, 474
BmsI GCATC 4 cut(s) 247, 413, 461, 509
BmtI GCTAGC 1 cut(s) 153
BmuI ACTGGG 2 cut(s) 426, 474
BpiI GAAGAC 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 526, 558
BpuMI CCSGG 1 cut(s) 339
BsaJI CCNNGG 5 cut(s) 36, 103, 198, 226, 337
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 4 cut(s) 30, 432, 480, 553
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 5 cut(s) 36, 103, 198, 226, 337
BseGI GGATG 2 cut(s) 262, 524
BseLI CCNNNNNNNGG 1 cut(s) 108
BseNI ACTGG 4 cut(s) 30, 432, 480, 553
BseXI GCAGC 1 cut(s) 158
BseYI CCCAGC 1 cut(s) 472
BshFI GGCC 4 cut(s) 242, 353, 357, 396
BsiHKAI GWGCWC 1 cut(s) 544
BsiSI CCGG 3 cut(s) 279, 339, 354
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 2 cut(s) 165, 526
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 4 cut(s) 242, 353, 357, 396
Bsp1286I GDGCHC 1 cut(s) 544
Bsp1407I TGTACA 1 cut(s) 84
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 2 cut(s) 273, 330
BspANI GGCC 4 cut(s) 242, 353, 357, 396
BspMI ACCTGC 1 cut(s) 520
BspOI GCTAGC 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 353
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 4 cut(s) 30, 432, 480, 553
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 5 cut(s) 36, 103, 198, 226, 337
BssT1I CCWWGG 2 cut(s) 103, 198
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 82, 290
Bst6I CTCTTC 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 151, 244, 355
BstDSI CCRYGG 3 cut(s) 36, 103, 226
BstF5I GGATG 2 cut(s) 262, 524
BstMAI GTCTC 2 cut(s) 165, 526
BstMWI GCNNNNNNNGC 2 cut(s) 354, 574
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 337, 348
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 549
BsuRI GGCC 4 cut(s) 242, 353, 357, 396
BtgI CCRYGG 3 cut(s) 36, 103, 226
BtsCI GGATG 2 cut(s) 262, 524
BtsI GCAGTG 2 cut(s) 343, 544
BtsIMutI CAGTG 3 cut(s) 23, 343, 544
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 3 cut(s) 151, 244, 355
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 3 cut(s) 78, 85, 190
CviAII CATG 1 cut(s) 104
CviQI GTAC 3 cut(s) 78, 85, 190
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Eco130I CCWWGG 2 cut(s) 103, 198
Eco147I AGGCCT 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 2 cut(s) 103, 198
EcoT22I ATGCAT 3 cut(s) 406, 454, 502
ErhI CCWWGG 2 cut(s) 103, 198
FaeI CATG 1 cut(s) 107
FaiI YATR 6 cut(s) 105, 165, 207, 293, 575, 590
FaqI GGGAC 1 cut(s) 320
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 2 cut(s) 269, 511
FseI GGCCGGCC 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 1 cut(s) 150
GluI GCNGC 1 cut(s) 147
GsaI CCCAGC 1 cut(s) 476
HaeIII GGCC 4 cut(s) 242, 353, 357, 396
HapII CCGG 3 cut(s) 279, 339, 354
Hin1II CATG 1 cut(s) 107
HincII GTYRAC 2 cut(s) 300, 367
HindII GTYRAC 2 cut(s) 300, 367
HinfI GANTC 3 cut(s) 98, 415, 463
HpaII CCGG 3 cut(s) 279, 339, 354
HphI GGTGA 3 cut(s) 107, 256, 501
Hpy166II GTNNAC 4 cut(s) 85, 111, 300, 367
Hpy188I TCNGA 4 cut(s) 374, 414, 462, 529
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 4 cut(s) 85, 111, 300, 367
HpyAV CCTTC 2 cut(s) 7, 355
HpyCH4III ACNGT 2 cut(s) 82, 290
HpyCH4V TGCA 5 cut(s) 246, 260, 404, 452, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 354, 574
Hsp92II CATG 1 cut(s) 107
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 4 cut(s) 202, 481, 520, 547
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 4 cut(s) 247, 413, 461, 509
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 4 cut(s) 95, 220, 341, 464
MboII GAAGA 5 cut(s) 24, 429, 477, 544, 549
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 2 cut(s) 130, 232
MlyI GAGTC 2 cut(s) 92, 472
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 1 cut(s) 286
Mph1103I ATGCAT 3 cut(s) 406, 454, 502
MroNI GCCGGC 1 cut(s) 353
MseI TTAA 2 cut(s) 129, 613
MspI CCGG 3 cut(s) 279, 339, 354
MspR9I CCNGG 2 cut(s) 339, 350
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 354, 574
NaeI GCCGGC 1 cut(s) 355
NciI CCSGG 1 cut(s) 339
NcoI CCATGG 1 cut(s) 103
NgoMIV GCCGGC 1 cut(s) 353
NheI GCTAGC 1 cut(s) 149
NlaIII CATG 1 cut(s) 107
NmuCI GTSAC 4 cut(s) 95, 220, 341, 464
NsiI ATGCAT 3 cut(s) 406, 454, 502
PaqCI CACCTGC 1 cut(s) 520
PceI AGGCCT 1 cut(s) 242
PciSI GCTCTTC 1 cut(s) 527
PdiI GCCGGC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 415
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 2 cut(s) 92, 471
PpsI GAGTC 2 cut(s) 92, 471
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 472
PspGI CCWGG 1 cut(s) 348
PspPI GGNCC 1 cut(s) 395
RigI GGCCGGCC 1 cut(s) 357
RsaI GTAC 3 cut(s) 79, 86, 191
RsaNI GTAC 3 cut(s) 78, 85, 190
SapI GCTCTTC 1 cut(s) 527
SaqAI TTAA 2 cut(s) 129, 613
SatI GCNGC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 2 cut(s) 92, 472
ScrFI CCNGG 2 cut(s) 339, 350
SduI GDGCHC 1 cut(s) 544
SetI ASST 7 cut(s) 93, 151, 161, 310, 366, 478, 514
SfaNI GCATC 4 cut(s) 247, 413, 461, 509
Sse9I AATT 2 cut(s) 130, 232
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 2 cut(s) 273, 330
SspMI CTAG 1 cut(s) 150
StuI AGGCCT 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 337, 348
StyI CCWWGG 2 cut(s) 103, 198
TaaI ACNGT 2 cut(s) 82, 290
TasI AATT 2 cut(s) 130, 232
TatI WGTACW 2 cut(s) 84, 189
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 2 cut(s) 129, 613
Tru9I TTAA 2 cut(s) 129, 613
TscAI CASTG 3 cut(s) 30, 350, 544
TseFI GTSAC 4 cut(s) 95, 220, 341, 464
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 4 cut(s) 95, 220, 341, 464
TspDTI ATGAA 1 cut(s) 375
TspGWI ACGGA 3 cut(s) 25, 243, 269
TspRI CASTG 3 cut(s) 30, 350, 544
XapI RAATTY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 3 cut(s) 406, 454, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.