Prupe.8G240400_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0017602
Physical Location & Seq
Forward (+)
21087193 .. 21088471
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G240400.1

Sequence Viewer

Length: 588 bp
ATGGCTTTTGCTAAGAATTCAATGCTTTTTTTCATGGTTATGGCTTTGTTTGGGGTCTGTTTTGGGACTGTGTACAAGGTGGGTGACTCTAACGGCTGGACAGACAAAGGCAGTGTTAGTTACAAGGATTGGGCATCTACTAAGAACTTCGTTGTTGGAGACACTATCGTTTTTGAGTACAATGCCAAGGAGCAAAATGTGGTGCAAGTGAAAACCCTCACAGAATTCAACGGCTGCAACTCAAAAGCTCCATTATCAACCTACAACTCTGGCAACGACGCTGTAGAGTTGAAGAAGGCTGGCCATTTCTTTTACATCTGTGGTCTTCCTGGGCACTGCGAGGCTGGCCAGAAAGTTGACATTAGGGTTCTTGAACCTAGCCAGGCACCTAGCCCAAGCCACTCAAGCCCTAGCCCTAGCCCTGCACCCAGCTCAAACCATTCTCACCACAATGAATCGTCCGCCCCGGTTCCATCTCCAAGTGCAAAGGCTCCTACCTCGCCTAACAAGAGCAGTGCTCTATCTGTCAAGTCTTCTAGTGGCTTGTTTATGCTTGTTGTGATGGGGGTTCTTGCTTACCTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

196

Amino Acids

20.72

Weight (kDa)

8.31

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23510
malus_domestica MD03G1264000.v1.1
prunus_persica Prupe.8G240400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0290981
rosa_laevigata RLG00000012158
rosa_multiflora Rmu_sc0001577.1_g000019
rosa_roxburghii Rroxscaffold_7G00176490
rosa_rugosa Rorug06G0216900
rosa_samantha Rh6AG326600 Rh6CG340300 Rh6DG327500
rosa_wichuraiana Rw6G028400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 385
AciI CCGC 1 cut(s) 462
AcoI YGGCCR 2 cut(s) 301, 346
AcsI RAATTY 2 cut(s) 16, 224
AfaI GTAC 2 cut(s) 74, 179
AgsI TTSAA 4 cut(s) 21, 229, 292, 374
AjnI CCWGG 2 cut(s) 328, 381
AluBI AGCT 2 cut(s) 248, 432
AluI AGCT 2 cut(s) 248, 432
Alw21I GWGCWC 1 cut(s) 520
Alw26I GTCTC 1 cut(s) 153
AoxI GGCC 2 cut(s) 301, 346
ApeKI GCWGC 1 cut(s) 234
ApoI RAATTY 2 cut(s) 16, 224
AsuC2I CCSGG 1 cut(s) 467
AsuHPI GGTGA 2 cut(s) 95, 437
BaeGI GKGCMC 1 cut(s) 336
BalI TGGCCA 2 cut(s) 303, 348
BanI GGYRCC 1 cut(s) 385
BbsI GAAGAC 2 cut(s) 317, 525
Bbv12I GWGCWC 1 cut(s) 520
BbvI GCAGC 1 cut(s) 221
BccI CCATC 2 cut(s) 481, 556
BceAI ACGGC 2 cut(s) 109, 247
BciT130I CCWGG 2 cut(s) 330, 383
BcnI CCSGG 1 cut(s) 467
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 5 cut(s) 378, 390, 411, 417, 537
BfmI CTRYAG 1 cut(s) 282
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme1390I CCNGG 3 cut(s) 330, 383, 467
BmiI GGNNCC 3 cut(s) 387, 471, 492
BmrFI CCNGG 3 cut(s) 330, 383, 467
BmsI GCATC 1 cut(s) 143
BpiI GAAGAC 2 cut(s) 317, 525
BplI GAGNNNNNCTC 2 cut(s) 502, 534
BpuEI CTTGAG 1 cut(s) 388
BpuMI CCSGG 1 cut(s) 467
BsaJI CCNNGG 3 cut(s) 186, 329, 465
BseBI CCWGG 2 cut(s) 330, 383
BseDI CCNNGG 3 cut(s) 186, 329, 465
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 408
BshFI GGCC 2 cut(s) 303, 348
BshNI GGYRCC 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 520
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 2 cut(s) 303, 348
Bsp1286I GDGCHC 2 cut(s) 336, 520
Bsp1407I TGTACA 1 cut(s) 72
BspACI CCGC 1 cut(s) 462
BspANI GGCC 2 cut(s) 303, 348
BspLI GGNNCC 3 cut(s) 387, 471, 492
BspT107I GGYRCC 1 cut(s) 385
BsrGI TGTACA 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 186, 329, 465
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 330, 383
Bst4CI ACNGT 1 cut(s) 70
BstAUI TGTACA 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 301, 346
BstDEI CTNAG 2 cut(s) 12, 141
BstMAI GTCTC 1 cut(s) 153
BstMWI GCNNNNNNNGC 3 cut(s) 345, 405, 581
BstNI CCWGG 2 cut(s) 330, 383
BstSCI CCNGG 3 cut(s) 328, 381, 465
BstSFI CTRYAG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 2 cut(s) 317, 525
BsuRI GGCC 2 cut(s) 303, 348
BtsI GCAGTG 3 cut(s) 118, 334, 520
BtsIMutI CAGTG 3 cut(s) 118, 334, 520
Cac8I GCNNGC 2 cut(s) 301, 346
CseI GACGC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 73, 178
CviAII CATG 1 cut(s) 34
CviQI GTAC 2 cut(s) 73, 178
DdeI CTNAG 2 cut(s) 12, 141
EaeI YGGCCR 2 cut(s) 301, 346
EciI GGCGGA 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 186
EcoRI GAATTC 2 cut(s) 16, 224
EcoRII CCWGG 2 cut(s) 328, 381
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 37
FaiI YATR 3 cut(s) 35, 41, 551
FaqI GGGAC 1 cut(s) 79
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 5 cut(s) 378, 390, 411, 417, 537
GluI GCNGC 1 cut(s) 235
GsaI CCCAGC 1 cut(s) 432
HaeIII GGCC 2 cut(s) 303, 348
HapII CCGG 1 cut(s) 467
HgaI GACGC 1 cut(s) 287
Hin1II CATG 1 cut(s) 37
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 2 cut(s) 86, 455
HpaII CCGG 1 cut(s) 467
HphI GGTGA 2 cut(s) 95, 437
Hpy166II GTNNAC 2 cut(s) 73, 358
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 2 cut(s) 73, 358
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 4 cut(s) 205, 237, 425, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 345, 405, 581
HpyF3I CTNAG 2 cut(s) 12, 141
Hsp92II CATG 1 cut(s) 37
LmnI GCTCC 3 cut(s) 190, 253, 496
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 143
MaeI CTAG 5 cut(s) 378, 390, 411, 417, 537
MaeIII GTNAC 2 cut(s) 83, 119
MboII GAAGA 3 cut(s) 304, 317, 525
MhlI GDGCHC 2 cut(s) 336, 520
MlsI TGGCCA 2 cut(s) 303, 348
MluCI AATT 2 cut(s) 16, 224
MluNI TGGCCA 2 cut(s) 303, 348
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 3 cut(s) 227, 334, 508
Mox20I TGGCCA 2 cut(s) 303, 348
MscI TGGCCA 2 cut(s) 303, 348
MseI TTAA 1 cut(s) 586
MslI CAYNNNNRTG 2 cut(s) 38, 450
Msp20I TGGCCA 2 cut(s) 303, 348
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 3 cut(s) 330, 383, 467
MvaI CCWGG 2 cut(s) 330, 383
MwoI GCNNNNNNNGC 3 cut(s) 345, 405, 581
NciI CCSGG 1 cut(s) 467
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 3 cut(s) 387, 471, 492
NmuCI GTSAC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 455
PkrI GCNGC 1 cut(s) 236
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 328, 381
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 2 cut(s) 328, 381
PspN4I GGNNCC 3 cut(s) 387, 471, 492
RsaI GTAC 2 cut(s) 74, 179
RsaNI GTAC 2 cut(s) 73, 178
RseI CAYNNNNRTG 2 cut(s) 38, 450
SaqAI TTAA 1 cut(s) 586
SatI GCNGC 1 cut(s) 235
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 3 cut(s) 330, 383, 467
SduI GDGCHC 2 cut(s) 336, 520
SetI ASST 8 cut(s) 81, 250, 263, 379, 391, 434, 500, 582
SfaNI GCATC 1 cut(s) 143
SfcI CTRYAG 1 cut(s) 282
SmiMI CAYNNNNRTG 2 cut(s) 38, 450
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
Sse9I AATT 2 cut(s) 16, 224
SsiI CCGC 1 cut(s) 462
SspMI CTAG 5 cut(s) 378, 390, 411, 417, 537
StyD4I CCNGG 3 cut(s) 328, 381, 465
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 70
TasI AATT 2 cut(s) 16, 224
TatI WGTACW 2 cut(s) 72, 177
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 586
Tru9I TTAA 1 cut(s) 586
TscAI CASTG 3 cut(s) 118, 341, 520
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 234
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 22, 468
TspRI CASTG 3 cut(s) 118, 341, 520
XapI RAATTY 2 cut(s) 16, 224
XspI CTAG 5 cut(s) 378, 390, 411, 417, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.