Plastocyanin-like domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g23510 |
| malus_domestica | MD03G1264000.v1.1 |
| prunus_persica | Prupe.8G240400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0290981 |
| rosa_laevigata | RLG00000012158 |
| rosa_multiflora | Rmu_sc0001577.1_g000019 |
| rosa_roxburghii | Rroxscaffold_7G00176490 |
| rosa_rugosa | Rorug06G0216900 |
| rosa_samantha | Rh6AG326600 Rh6CG340300 Rh6DG327500 |
| rosa_wichuraiana | Rw6G028400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 328 |
| AccB1I | GGYRCC | 1 cut(s) | 26 |
| AcoI | YGGCCR | 1 cut(s) | 136 |
| AcuI | CTGAAG | 1 cut(s) | 291 |
| AgeI | ACCGGT | 1 cut(s) | 155 |
| AgsI | TTSAA | 1 cut(s) | 76 |
| AhlI | ACTAGT | 1 cut(s) | 215 |
| AjnI | CCWGG | 1 cut(s) | 133 |
| AluBI | AGCT | 2 cut(s) | 190, 311 |
| AluI | AGCT | 2 cut(s) | 190, 311 |
| Alw21I | GWGCWC | 1 cut(s) | 292 |
| Alw26I | GTCTC | 2 cut(s) | 85, 111 |
| AoxI | GGCC | 1 cut(s) | 136 |
| ApeKI | GCWGC | 1 cut(s) | 311 |
| AsiGI | ACCGGT | 1 cut(s) | 155 |
| AsuHPI | GGTGA | 3 cut(s) | 56, 145, 264 |
| BalI | TGGCCA | 1 cut(s) | 138 |
| BanI | GGYRCC | 1 cut(s) | 26 |
| Bbv12I | GWGCWC | 1 cut(s) | 292 |
| BbvI | GCAGC | 1 cut(s) | 298 |
| BccI | CCATC | 4 cut(s) | 51, 301, 305, 328 |
| BceAI | ACGGC | 1 cut(s) | 14 |
| BciT130I | CCWGG | 1 cut(s) | 135 |
| BcoDI | GTCTC | 2 cut(s) | 85, 111 |
| BcuI | ACTAGT | 1 cut(s) | 215 |
| BfaI | CTAG | 4 cut(s) | 216, 252, 258, 264 |
| BfuAI | ACCTGC | 1 cut(s) | 328 |
| BisI | GCNGC | 1 cut(s) | 312 |
| BlsI | GCNGC | 1 cut(s) | 313 |
| Bme1390I | CCNGG | 1 cut(s) | 135 |
| BmiI | GGNNCC | 1 cut(s) | 28 |
| BmrFI | CCNGG | 1 cut(s) | 135 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 108, 140, 274, 306 |
| BsaWI | WCCGGW | 1 cut(s) | 155 |
| Bse118I | RCCGGY | 1 cut(s) | 155 |
| BseBI | CCWGG | 1 cut(s) | 135 |
| BseGI | GGATG | 3 cut(s) | 62, 293, 297 |
| BseMII | CTCAG | 1 cut(s) | 42 |
| BseXI | GCAGC | 1 cut(s) | 298 |
| BshFI | GGCC | 1 cut(s) | 138 |
| BshNI | GGYRCC | 1 cut(s) | 26 |
| BshTI | ACCGGT | 1 cut(s) | 155 |
| BsiHKAI | GWGCWC | 1 cut(s) | 292 |
| BsiSI | CCGG | 1 cut(s) | 156 |
| BsmAI | GTCTC | 2 cut(s) | 85, 111 |
| BsnI | GGCC | 1 cut(s) | 138 |
| Bsp1286I | GDGCHC | 1 cut(s) | 292 |
| BspANI | GGCC | 1 cut(s) | 138 |
| BspCNI | CTCAG | 1 cut(s) | 43 |
| BspLI | GGNNCC | 1 cut(s) | 28 |
| BspMI | ACCTGC | 1 cut(s) | 328 |
| BspT107I | GGYRCC | 1 cut(s) | 26 |
| BsrFI | RCCGGY | 1 cut(s) | 155 |
| BssAI | RCCGGY | 1 cut(s) | 155 |
| Bst2UI | CCWGG | 1 cut(s) | 135 |
| Bst4CI | ACNGT | 1 cut(s) | 112 |
| BstC8I | GCNNGC | 1 cut(s) | 176 |
| BstDEI | CTNAG | 1 cut(s) | 51 |
| BstF5I | GGATG | 3 cut(s) | 62, 293, 297 |
| BstMAI | GTCTC | 2 cut(s) | 85, 111 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 320 |
| BstNI | CCWGG | 1 cut(s) | 135 |
| BstSCI | CCNGG | 1 cut(s) | 133 |
| BstV1I | GCAGC | 1 cut(s) | 298 |
| BsuRI | GGCC | 1 cut(s) | 138 |
| BtsCI | GGATG | 3 cut(s) | 62, 293, 297 |
| BtsI | GCAGTG | 2 cut(s) | 169, 292 |
| BtsIMutI | CAGTG | 3 cut(s) | 108, 169, 292 |
| BveI | ACCTGC | 1 cut(s) | 328 |
| Cac8I | GCNNGC | 1 cut(s) | 176 |
| Cfr10I | RCCGGY | 1 cut(s) | 155 |
| CspAI | ACCGGT | 1 cut(s) | 155 |
| DdeI | CTNAG | 1 cut(s) | 51 |
| EaeI | YGGCCR | 1 cut(s) | 136 |
| Eco57I | CTGAAG | 1 cut(s) | 291 |
| EcoRII | CCWGG | 1 cut(s) | 133 |
| FaiI | YATR | 2 cut(s) | 66, 341 |
| Fnu4HI | GCNGC | 1 cut(s) | 312 |
| FokI | GGATG | 3 cut(s) | 69, 280, 284 |
| Fsp4HI | GCNGC | 1 cut(s) | 312 |
| FspBI | CTAG | 4 cut(s) | 216, 252, 258, 264 |
| GluI | GCNGC | 1 cut(s) | 312 |
| HaeIII | GGCC | 1 cut(s) | 138 |
| HapII | CCGG | 1 cut(s) | 156 |
| HindIII | AAGCTT | 1 cut(s) | 188 |
| HinfI | GANTC | 2 cut(s) | 47, 119 |
| HpaII | CCGG | 1 cut(s) | 156 |
| HphI | GGTGA | 3 cut(s) | 56, 145, 264 |
| Hpy166II | GTNNAC | 2 cut(s) | 34, 182 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 200, 213 |
| Hpy8I | GTNNAC | 2 cut(s) | 34, 182 |
| HpyCH4III | ACNGT | 1 cut(s) | 112 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 320 |
| HpyF3I | CTNAG | 1 cut(s) | 51 |
| LmnI | GCTCC | 1 cut(s) | 295 |
| LpnPI | CCDG | 4 cut(s) | 120, 147, 169, 333 |
| Lsp1109I | GCAGC | 1 cut(s) | 298 |
| MaeI | CTAG | 4 cut(s) | 216, 252, 258, 264 |
| MaeIII | GTNAC | 2 cut(s) | 44, 158 |
| MboII | GAAGA | 2 cut(s) | 136, 297 |
| MhlI | GDGCHC | 1 cut(s) | 292 |
| MlsI | TGGCCA | 1 cut(s) | 138 |
| MluNI | TGGCCA | 1 cut(s) | 138 |
| MlyI | GAGTC | 2 cut(s) | 41, 113 |
| MmeI | TCCRAC | 3 cut(s) | 68, 94, 236 |
| MnlI | CCTC | 3 cut(s) | 46, 219, 370 |
| Mox20I | TGGCCA | 1 cut(s) | 138 |
| MscI | TGGCCA | 1 cut(s) | 138 |
| Msp20I | TGGCCA | 1 cut(s) | 138 |
| MspA1I | CMGCKG | 1 cut(s) | 311 |
| MspI | CCGG | 1 cut(s) | 156 |
| MspR9I | CCNGG | 1 cut(s) | 135 |
| MvaI | CCWGG | 1 cut(s) | 135 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 320 |
| NlaIV | GGNNCC | 1 cut(s) | 28 |
| NmuCI | GTSAC | 1 cut(s) | 44 |
| PinAI | ACCGGT | 1 cut(s) | 155 |
| PkrI | GCNGC | 1 cut(s) | 313 |
| PleI | GAGTC | 2 cut(s) | 41, 113 |
| PpsI | GAGTC | 2 cut(s) | 41, 113 |
| Psp6I | CCWGG | 1 cut(s) | 133 |
| PspGI | CCWGG | 1 cut(s) | 133 |
| PspN4I | GGNNCC | 1 cut(s) | 28 |
| PvuII | CAGCTG | 1 cut(s) | 311 |
| SatI | GCNGC | 1 cut(s) | 312 |
| SchI | GAGTC | 2 cut(s) | 41, 113 |
| ScrFI | CCNGG | 1 cut(s) | 135 |
| SduI | GDGCHC | 1 cut(s) | 292 |
| SetI | ASST | 5 cut(s) | 42, 73, 192, 313, 322 |
| SpeI | ACTAGT | 1 cut(s) | 215 |
| SspI | AATATT | 1 cut(s) | 330 |
| SspMI | CTAG | 4 cut(s) | 216, 252, 258, 264 |
| StyD4I | CCNGG | 1 cut(s) | 133 |
| TaaI | ACNGT | 1 cut(s) | 112 |
| TscAI | CASTG | 3 cut(s) | 115, 176, 292 |
| TseFI | GTSAC | 1 cut(s) | 44 |
| TseI | GCWGC | 1 cut(s) | 311 |
| Tsp45I | GTSAC | 1 cut(s) | 44 |
| TspRI | CASTG | 3 cut(s) | 115, 176, 292 |
| XspI | CTAG | 4 cut(s) | 216, 252, 258, 264 |