FvH4_2g24070

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
19652607 .. 19656864
4258 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24070.t1

Sequence Viewer

Length: 1341 bp
ATGGCTTCGGTCGCTCTCCGAAACCCTAACTCCCGCCGCCTCCTCCCCGTCTCCTCCCAAATCTACTCCTGCTGCCGTGGATCCGCCACCGCACCTTCTCCGATCTCCTCTGAAAATGACCGCTCTTACAACCCCATTCCTTGGTGGAGATCCATGGCCACCTTCACACGCACGAAACCTCATGTGAATGTGGGAACTATTGGACATGTCGATCACGGAAAGACGACTCTGACTGCTGCAATTACAAGGGTACTTGCGGAAGAAGGGAAAGCTAAGGCAATAGCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAAAAGAGAGGAATTACAATTGCTACGGCTCATGTGGAGTATGAGACCACTAAACGCCATTATGCTCATGTGGACTGCCCAGGACATGCTGATTATGTCAAAAACATGATTACTGGAGCTGCTCAAATGGATGGGGGTATTCTTGTTGTATCCGCTCCTGATGGGCCTATGCCACAAACTAAGGAACACATTCTGCTTGCACGCCAGGTTGGTGTGCCATCGCTTGTGTGTTTCCTCAATAAAGTTGATGCAGTTGATGATCCAGAGTTGTTGGAACTTGTCGAAATGGAACTCCGTGAACTTCTTAATTTCTACAAGTTCCCTGGGGATGAAATCCCTATTGTCCGTGGTTCAGCCTTGTCTGCGTTGCAAGGCACAAATGACGAGATAGGCAAAAAGGCAATTTTGAAATTAATGGAATCTGTGGATCAATACATCCCAGACCCTGTACGCCAACTTGACAAGCCTTTCCTTATGCCAATTGAAGATGTTTTCTCAATTCAAGGCCGTGGAACTGTTGCTACTGGACGCATTGAACAAGGGTGCATTAAAGTTGGTGAGGAAGTTGAGATTCTGGGGCTACATCAGTCCGGTCCTCAAAAAACTGTGGTGACAGGTGTTGAGATGTTCAAGAAAATCTTAGATCGAGGGGAAGCTGGTGACAATGTGGGTCTTCTTCTTCGAGGTCTAAAACGAGAAGATATACAACGAGGACAGGTAATTGCTAAGCCAGGAACAGTGAAAACACACAAGAGATTTGAAGCAGAGATATATGTCCTCACAAAGGATGAAGGTGGACGTCATACTGCCTTTTTCTCAAACTACATGCCTCAGTTTTATTTGAGGACTGCAGATATCACTGGAAAAGTAGAATTGCCGGAGGATGTTAAAATGGTTATGCCTGGTGATAATGTGACTGCAGTTTTTGAGCTCATGCTACCTGTTCCCCTTGAAGCAGGTCAAAGATTTGCATTGAGGGAGGGAGGTAGAACAGTTGGTGCCGGGGTGGTTTCAAAATTACTTTGA

Protein Analysis

447

Amino Acids

48.93

Weight (kDa)

6.44

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 59 - 252 3.2e-62 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 276 - 347 1.2e-19 Elongation factor Tu domain 2
GTP_EFTU_D3 PF03143 351 - 445 1.3e-35 Elongation factor Tu C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02930
fragaria_vesca FvH4_2g24070
malus_domestica MD03G1270100.v1.1 MD11G1290900.v1.1
prunus_persica Prupe.8G246000_v2.0.a1
pyrus_communis pycom03g21520 pycom11g25790
rosa_chinensis RchiOBHm_Chr6g0291851
rosa_laevigata RLG00000012083
rosa_multiflora Rmu_sc0001043.1_g000017
rosa_roxburghii Rroxscaffold_7G00175700
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG334700 Rh6BG342200 Rh6DG335000
rosa_wichuraiana Rw6G028930 Rw6G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1117
Acc36I ACCTGC 1 cut(s) 1262
AccB1I GGYRCC 1 cut(s) 1313
AccB7I CCANNNNNTGG 1 cut(s) 141
AccBSI CCGCTC 2 cut(s) 123, 470
AciI CCGC 7 cut(s) 34, 37, 84, 90, 121, 257, 468
AclWI GGATC 5 cut(s) 75, 88, 144, 569, 750
AcoI YGGCCR 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 1114
AfaI GTAC 2 cut(s) 252, 765
AfiI CCNNNNNNNGG 2 cut(s) 141, 1099
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 8 cut(s) 724, 800, 818, 851, 946, 1076, 1268, 1329
AjnI CCWGG 5 cut(s) 394, 519, 637, 1045, 1216
AluBI AGCT 4 cut(s) 272, 434, 971, 1246
AluI AGCT 4 cut(s) 272, 434, 971, 1246
Alw21I GWGCWC 1 cut(s) 1248
Alw26I GTCTC 2 cut(s) 55, 353
AlwI GGATC 5 cut(s) 75, 88, 144, 569, 750
AlwNI CAGNNNCTG 1 cut(s) 761
AoxI GGCC 4 cut(s) 156, 303, 479, 820
ApeKI GCWGC 3 cut(s) 72, 236, 434
AseI ATTAAT 1 cut(s) 728
Asp700I GAANNNNTTC 1 cut(s) 504
AspS9I GGNCC 3 cut(s) 304, 479, 908
AsuC2I CCSGG 1 cut(s) 1318
AsuHPI GGTGA 4 cut(s) 884, 937, 986, 1232
AvaII GGWCC 1 cut(s) 908
BalI TGGCCA 1 cut(s) 158
BamHI GGATCC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 1313
BanII GRGCYC 1 cut(s) 1248
BbsI GAAGAC 1 cut(s) 980
Bbv12I GWGCWC 1 cut(s) 1248
BbvI GCAGC 3 cut(s) 59, 223, 421
BccI CCATC 3 cut(s) 440, 470, 541
BceAI ACGGC 3 cut(s) 60, 357, 807
BciT130I CCWGG 5 cut(s) 396, 521, 639, 1047, 1218
BciVI GTATCC 1 cut(s) 475
BcnI CCSGG 1 cut(s) 1318
BcoDI GTCTC 2 cut(s) 55, 353
BfmI CTRYAG 2 cut(s) 1164, 1233
BfuAI ACCTGC 1 cut(s) 1262
BfuI GTATCC 1 cut(s) 475
BisI GCNGC 4 cut(s) 37, 73, 237, 435
BlpI GCTNAGC 1 cut(s) 1041
BlsI GCNGC 4 cut(s) 38, 74, 238, 436
Bme1390I CCNGG 6 cut(s) 396, 521, 639, 1047, 1218, 1318
Bme18I GGWCC 1 cut(s) 908
BmgT120I GGNCC 3 cut(s) 304, 479, 908
BmiI GGNNCC 3 cut(s) 82, 306, 1315
BmrFI CCNGG 6 cut(s) 396, 521, 639, 1047, 1218, 1318
BmsI GCATC 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 980
BpmI CTGGAG 1 cut(s) 450
Bpu10I CCTNAGC 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 1041
BpuMI CCSGG 1 cut(s) 1318
BsaHI GRCGYC 1 cut(s) 1114
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 9 cut(s) 76, 140, 153, 394, 637, 638, 661, 823, 1317
BsaWI WCCGGW 1 cut(s) 905
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 1099
Bse1I ACTGG 3 cut(s) 433, 844, 1180
BseBI CCWGG 5 cut(s) 396, 521, 639, 1047, 1218
BseDI CCNNGG 9 cut(s) 76, 140, 153, 394, 637, 638, 661, 823, 1317
BseGI GGATG 5 cut(s) 451, 649, 750, 1108, 1204
BseLI CCNNNNNNNGG 2 cut(s) 141, 1099
BseMII CTCAG 1 cut(s) 1160
BseNI ACTGG 3 cut(s) 433, 844, 1180
BseRI GAGGAG 3 cut(s) 32, 43, 97
BseXI GCAGC 3 cut(s) 59, 223, 421
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 4 cut(s) 158, 305, 481, 822
BshNI GGYRCC 1 cut(s) 1313
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 1248
BsiSI CCGG 3 cut(s) 906, 1193, 1317
BslI CCNNNNNNNGG 2 cut(s) 141, 1099
BsmAI GTCTC 2 cut(s) 55, 353
BsmBI CGTCTC 1 cut(s) 55
BsnI GGCC 4 cut(s) 158, 305, 481, 822
Bso31I GGTCTC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 1248
Bsp143I GATC 7 cut(s) 80, 102, 149, 211, 574, 742, 958
Bsp1720I GCTNAGC 1 cut(s) 1041
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 7 cut(s) 34, 37, 84, 90, 121, 257, 468
BspANI GGCC 4 cut(s) 158, 305, 481, 822
BspCNI CTCAG 1 cut(s) 1159
BspLI GGNNCC 3 cut(s) 82, 306, 1315
BspMAI CTGCAG 2 cut(s) 1168, 1237
BspMI ACCTGC 1 cut(s) 1262
BspPI GGATC 5 cut(s) 75, 88, 144, 569, 750
BspT107I GGYRCC 1 cut(s) 1313
BspTNI GGTCTC 1 cut(s) 353
BsrBI CCGCTC 2 cut(s) 123, 470
BsrI ACTGG 3 cut(s) 433, 844, 1180
BssECI CCNNGG 9 cut(s) 76, 140, 153, 394, 637, 638, 661, 823, 1317
BssMI GATC 7 cut(s) 80, 102, 149, 211, 574, 742, 958
BssNI GRCGYC 1 cut(s) 1114
BssT1I CCWWGG 2 cut(s) 140, 153
Bst2UI CCWGG 5 cut(s) 396, 521, 639, 1047, 1218
Bst4CI ACNGT 4 cut(s) 832, 922, 1054, 1309
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 1 cut(s) 1114
BstC8I GCNNGC 2 cut(s) 513, 517
BstDEI CTNAG 5 cut(s) 273, 495, 955, 1041, 1146
BstDSI CCRYGG 4 cut(s) 76, 153, 661, 823
BstENI CCTNNNNNAGG 1 cut(s) 1097
BstF5I GGATG 5 cut(s) 451, 649, 750, 1108, 1204
BstKTI GATC 7 cut(s) 83, 105, 152, 214, 577, 745, 961
BstMAI GTCTC 2 cut(s) 55, 353
BstMBI GATC 7 cut(s) 80, 102, 149, 211, 574, 742, 958
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 11, 677
BstNI CCWGG 5 cut(s) 396, 521, 639, 1047, 1218
BstNSI RCATGY 3 cut(s) 209, 404, 1144
BstSCI CCNGG 6 cut(s) 394, 519, 637, 1045, 1216, 1316
BstSFI CTRYAG 2 cut(s) 1164, 1233
BstV1I GCAGC 3 cut(s) 59, 223, 421
BstV2I GAAGAC 1 cut(s) 980
BstX2I RGATCY 2 cut(s) 80, 149
BstYI RGATCY 2 cut(s) 80, 149
BsuI GTATCC 1 cut(s) 475
BsuRI GGCC 4 cut(s) 158, 305, 481, 822
BtgI CCRYGG 4 cut(s) 76, 153, 661, 823
BtgZI GCGATG 1 cut(s) 519
BtsCI GGATG 5 cut(s) 451, 649, 750, 1108, 1204
BtsIMutI CAGTG 2 cut(s) 1059, 1173
BveI ACCTGC 1 cut(s) 1262
Cac8I GCNNGC 2 cut(s) 513, 517
CaiI CAGNNNCTG 1 cut(s) 761
Cfr13I GGNCC 3 cut(s) 304, 479, 908
CseI GACGC 1 cut(s) 852
Csp6I GTAC 2 cut(s) 251, 764
CviAII CATG 9 cut(s) 154, 182, 206, 347, 383, 401, 421, 1141, 1249
CviQI GTAC 2 cut(s) 251, 764
DdeI CTNAG 5 cut(s) 273, 495, 955, 1041, 1146
DpnI GATC 7 cut(s) 82, 104, 151, 213, 576, 744, 960
DpnII GATC 7 cut(s) 80, 102, 149, 211, 574, 742, 958
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
EciI GGCGGA 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 1246
Eco130I CCWWGG 2 cut(s) 140, 153
Eco24I GRGCYC 1 cut(s) 1248
Eco31I GGTCTC 1 cut(s) 353
Eco32I GATATC 1 cut(s) 1171
Eco47I GGWCC 1 cut(s) 908
Eco53kI GAGCTC 1 cut(s) 1246
Eco57I CTGAAG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 1246
EcoNI CCTNNNNNAGG 1 cut(s) 1097
EcoO109I RGGNCCY 1 cut(s) 304
EcoRII CCWGG 5 cut(s) 394, 519, 637, 1045, 1216
EcoRV GATATC 1 cut(s) 1171
EcoT14I CCWWGG 2 cut(s) 140, 153
EcoT38I GRGCYC 1 cut(s) 1248
ErhI CCWWGG 2 cut(s) 140, 153
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 9 cut(s) 157, 185, 209, 350, 386, 404, 424, 1144, 1252
FalI AAGNNNNNCTT 2 cut(s) 938, 970
FatI CATG 9 cut(s) 153, 181, 205, 346, 382, 400, 420, 1140, 1248
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 4 cut(s) 37, 73, 237, 435
FokI GGATG 5 cut(s) 458, 656, 737, 1115, 1211
FriOI GRGCYC 1 cut(s) 1248
Fsp4HI GCNGC 4 cut(s) 37, 73, 237, 435
GluI GCNGC 4 cut(s) 37, 73, 237, 435
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 4 cut(s) 158, 305, 481, 822
HapII CCGG 3 cut(s) 906, 1193, 1317
HgaI GACGC 1 cut(s) 852
Hin1I GRCGYC 1 cut(s) 1114
Hin1II CATG 9 cut(s) 157, 185, 209, 350, 386, 404, 424, 1144, 1252
HinfI GANTC 3 cut(s) 226, 734, 886
HpaII CCGG 3 cut(s) 906, 1193, 1317
HphI GGTGA 4 cut(s) 884, 937, 986, 1232
Hpy166II GTNNAC 3 cut(s) 388, 614, 1112
Hpy188I TCNGA 4 cut(s) 20, 102, 112, 231
Hpy188III TCNNGA 3 cut(s) 473, 578, 946
Hpy8I GTNNAC 3 cut(s) 388, 614, 1112
HpyAV CCTTC 4 cut(s) 105, 172, 257, 1100
HpyCH4III ACNGT 4 cut(s) 832, 922, 1054, 1309
HpyCH4IV ACGT 1 cut(s) 1114
HpyCH4V TGCA 8 cut(s) 239, 515, 566, 685, 861, 1166, 1235, 1286
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 677
HpyF3I CTNAG 5 cut(s) 273, 495, 955, 1041, 1146
HpySE526I ACGT 1 cut(s) 1114
Hsp92I GRCGYC 1 cut(s) 1114
Hsp92II CATG 9 cut(s) 157, 185, 209, 350, 386, 404, 424, 1144, 1252
Kzo9I GATC 7 cut(s) 80, 102, 149, 211, 574, 742, 958
LmnI GCTCC 2 cut(s) 431, 475
Lsp1109I GCAGC 3 cut(s) 59, 223, 421
LweI GCATC 1 cut(s) 553
MaeII ACGT 1 cut(s) 1114
MaeIII GTNAC 3 cut(s) 925, 974, 1228
MalI GATC 7 cut(s) 82, 104, 151, 213, 576, 744, 960
MbiI CCGCTC 2 cut(s) 123, 470
MboI GATC 7 cut(s) 80, 102, 149, 211, 574, 742, 958
MboII GAAGA 7 cut(s) 272, 323, 812, 980, 983, 986, 1025
MfeI CAATTG 2 cut(s) 333, 795
MflI RGATCY 2 cut(s) 80, 149
MhlI GDGCHC 1 cut(s) 1248
MlsI TGGCCA 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 567
Mox20I TGGCCA 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 504
MscI TGGCCA 1 cut(s) 158
MseI TTAA 4 cut(s) 621, 728, 864, 1203
MslI CAYNNNNRTG 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 158
MspI CCGG 3 cut(s) 906, 1193, 1317
MspR9I CCNGG 6 cut(s) 396, 521, 639, 1047, 1218, 1318
MunI CAATTG 2 cut(s) 333, 795
MvaI CCWGG 5 cut(s) 396, 521, 639, 1047, 1218
MwoI GCNNNNNNNGC 2 cut(s) 11, 677
NciI CCSGG 1 cut(s) 1318
NcoI CCATGG 1 cut(s) 153
NdeII GATC 7 cut(s) 80, 102, 149, 211, 574, 742, 958
NlaIII CATG 9 cut(s) 157, 185, 209, 350, 386, 404, 424, 1144, 1252
NlaIV GGNNCC 3 cut(s) 82, 306, 1315
NmuCI GTSAC 3 cut(s) 925, 974, 1228
NspI RCATGY 3 cut(s) 209, 404, 1144
PasI CCCWGGG 1 cut(s) 638
PciI ACATGT 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 734, 886
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 4 cut(s) 38, 74, 238, 436
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PscI ACATGT 1 cut(s) 205
PshBI ATTAAT 1 cut(s) 728
Psp124BI GAGCTC 1 cut(s) 1248
Psp6I CCWGG 5 cut(s) 394, 519, 637, 1045, 1216
PspGI CCWGG 5 cut(s) 394, 519, 637, 1045, 1216
PspN4I GGNNCC 3 cut(s) 82, 306, 1315
PspPI GGNCC 3 cut(s) 304, 479, 908
PsrI GAACNNNNNNTAC 2 cut(s) 820, 852
PstI CTGCAG 2 cut(s) 1168, 1237
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 2 cut(s) 80, 149
RsaI GTAC 2 cut(s) 252, 765
RsaNI GTAC 2 cut(s) 251, 764
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 1 cut(s) 1248
SaqAI TTAA 4 cut(s) 621, 728, 864, 1203
SatI GCNGC 4 cut(s) 37, 73, 237, 435
Sau3AI GATC 7 cut(s) 80, 102, 149, 211, 574, 742, 958
Sau96I GGNCC 3 cut(s) 304, 479, 908
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 6 cut(s) 396, 521, 639, 1047, 1218, 1318
SduI GDGCHC 1 cut(s) 1248
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 2 cut(s) 1164, 1233
SinI GGWCC 1 cut(s) 908
SmiMI CAYNNNNRTG 1 cut(s) 186
SsiI CCGC 7 cut(s) 34, 37, 84, 90, 121, 257, 468
SstI GAGCTC 1 cut(s) 1248
StyD4I CCNGG 6 cut(s) 394, 519, 637, 1045, 1216, 1316
StyI CCWWGG 2 cut(s) 140, 153
TaaI ACNGT 4 cut(s) 832, 922, 1054, 1309
TaiI ACGT 1 cut(s) 1117
TaqI TCGA 4 cut(s) 210, 597, 961, 997
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 2 cut(s) 734, 886
Tru1I TTAA 4 cut(s) 621, 728, 864, 1203
Tru9I TTAA 4 cut(s) 621, 728, 864, 1203
TscAI CASTG 2 cut(s) 1059, 1180
TseFI GTSAC 3 cut(s) 925, 974, 1228
TseI GCWGC 3 cut(s) 72, 236, 434
Tsp45I GTSAC 3 cut(s) 925, 974, 1228
TspDTI ATGAA 3 cut(s) 306, 660, 1119
TspGWI ACGGA 3 cut(s) 231, 599, 650
TspRI CASTG 2 cut(s) 1059, 1180
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 908
VspI ATTAAT 1 cut(s) 728
XagI CCTNNNNNAGG 1 cut(s) 1097
XceI RCATGY 3 cut(s) 209, 404, 1144
XmnI GAANNNNTTC 1 cut(s) 504
ZraI GACGTC 1 cut(s) 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.