Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014027

Physical Location & Seq

Genomic Coordinates Forward (+)

54003418 .. 54007343

Gene Structure 3926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG335000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTTAAAGGATGAAACTTTATGCATATGGTGGTGTCTGCCTAACAGAAAACCTCATGTGAATGTGGGAACTATTGGTCATGTCGATCACGGAAAGACGACGCTGACTGCTGCAATCACAAGGGTACTTGCGGAAGAAGGGAAAGCTAAGGCAATAGCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGGATTACAATTGCTACGGCTCATGTGGAGTATGAGACCACTAAACGCCATTATGCACATGTGGACTGCCCAGGACATGCTGATTATGTCAAAAACATGATTACTGGAGCTGCTCAAATGGATGGGGGTATCCTTGTTGTATCTGCGCCTGATGGGCCTATGCCACAAACTAAGGAACACATTCTGCTTGCACGCCAGGTTGGTGTGCCATCACTTGTGTGTTTCCTCAATAAAGTTGATGCTGTTGATGATCCAGAGTTGTTGGAGCTTGTCGAAATGGAACTCCGTGAACTTCTTAGTTTCTACAAGTTCCCTGGGGATGAAATCCCTATCATCCGTGGTTCGGCTTTGTCTGCTTTGCAAGGCACAAATGAAGAGATAGGCAAAAAGGCAATTTTGAAATTAATGGAATCTGTAGATGAATACATTCCAGACCCTGTACGCCAGCTTGACAAGCCTTTCCTTATGCCAATTGAAGATGTGTTCTCAATTCAGGGGCGTGGAACTGTTGCTACTGGACGCATTGAACAAGGGTGCATTAAAGTTGGTGAGGAAGTCGAGATTCTGGGGTTACATCAGGGCGCTCCTCAGAAAACTGTGGTGACAGGTGTTGAGATGTTCAAGAAAATCTTGGATCAAGGGCAAGCTGGTGACAATGTGGGTCTTCTTCTGAGAGGTCTAAAACGAGAAGATATACAACGAGGACAGGTAATTGCTAAGCCAGGAACAGTGAAAACGCACAAGAGGTTTGAAGCAGAGATATATGTCCTCACAAAGGATGAAGGTGGACGTCATACTGCCTTTTTCTCAAACTACATGCCTCAGTTTTATTTGAGGACTGCAGATATCACTGGAAAAGTAGAATTGCCAGCTGACGTTAAAATGGTTATGCCTGGTGACAACGTGACTGCAGTTTTTGAGCTCATTCTACCTGTTCCTCTTGAAGCAGGTCAAAGATTTGCCTTAAGGGAGGGAGGTAGAACAGTTGGTGCAGGAGTAGTTTCAAAACTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0008150 GO:0008270 GO:0010035 GO:0010038 GO:0017076 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 GTP_EFTU_D3

Protein Analysis

404

Amino Acids

44.35

Weight (kDa)

5.84

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	17 - 210	3.6e-62	Elongation factor Tu GTP binding domain
GTP_EFTU_D2	PF03144	234 - 305	1.3e-19	Elongation factor Tu domain 2
GTP_EFTU_D3	PF03143	309 - 403	1.8e-35	Elongation factor Tu C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02930
fragaria_vesca	FvH4_2g24070
malus_domestica	MD03G1270100.v1.1 MD11G1290900.v1.1
prunus_persica	Prupe.8G246000_v2.0.a1
pyrus_communis	pycom03g21520 pycom11g25790
rosa_chinensis	RchiOBHm_Chr6g0291851
rosa_laevigata	RLG00000012083
rosa_multiflora	Rmu_sc0001043.1_g000017
rosa_roxburghii	Rroxscaffold_7G00175700
rosa_rugosa	Rorug06G0221700
rosa_samantha	Rh6AG334700 Rh6BG342200 Rh6DG335000
rosa_wichuraiana	Rw6G028930 Rw6G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	991
Acc36I	ACCTGC	1 cut(s)	1136
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	2 cut(s)	443, 840
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	988
AfaI	GTAC	2 cut(s)	126, 639
AfiI	CCNNNNNNNGG	2 cut(s)	541, 973
AflII	CTTAAG	1 cut(s)	1162
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	7 cut(s)	598, 674, 725, 820, 950, 1142, 1203
AjnI	CCWGG	5 cut(s)	268, 393, 511, 919, 1090
AleI	CACNNNNGTG	1 cut(s)	415
AluBI	AGCT	7 cut(s)	146, 308, 466, 646, 845, 1070, 1120
AluI	AGCT	7 cut(s)	146, 308, 466, 646, 845, 1070, 1120
Alw21I	GWGCWC	1 cut(s)	1122
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	443, 840
AlwNI	CAGNNNCTG	1 cut(s)	635
AoxI	GGCC	2 cut(s)	177, 353
ApeKI	GCWGC	2 cut(s)	110, 308
AseI	ATTAAT	1 cut(s)	602
Asp700I	GAANNNNTTC	2 cut(s)	378, 624
AspLEI	GCGC	2 cut(s)	346, 782
AspS9I	GGNCC	2 cut(s)	178, 353
AsuHPI	GGTGA	4 cut(s)	758, 811, 860, 1106
BanII	GRGCYC	1 cut(s)	1122
BbsI	GAAGAC	1 cut(s)	854
Bbv12I	GWGCWC	1 cut(s)	1122
BbvI	GCAGC	2 cut(s)	97, 295
BccI	CCATC	3 cut(s)	314, 344, 415
BceAI	ACGGC	1 cut(s)	231
BciT130I	CCWGG	5 cut(s)	270, 395, 513, 921, 1092
BciVI	GTATCC	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	227
BfmI	CTRYAG	3 cut(s)	612, 1038, 1107
BfoI	RGCGCY	1 cut(s)	783
BfrI	CTTAAG	1 cut(s)	1162
BfuAI	ACCTGC	1 cut(s)	1136
BfuI	GTATCC	1 cut(s)	338
BglI	GCCNNNNNGGC	1 cut(s)	352
BisI	GCNGC	2 cut(s)	111, 309
BlpI	GCTNAGC	1 cut(s)	915
BlsI	GCNGC	2 cut(s)	112, 310
Bme1390I	CCNGG	5 cut(s)	270, 395, 513, 921, 1092
BmgT120I	GGNCC	2 cut(s)	178, 353
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	5 cut(s)	270, 395, 513, 921, 1092
BmsI	GCATC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	854
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	915
BsaHI	GRCGYC	1 cut(s)	988
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	4 cut(s)	268, 511, 512, 535
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 973
Bse1I	ACTGG	3 cut(s)	307, 718, 1054
BseBI	CCWGG	5 cut(s)	270, 395, 513, 921, 1092
BseDI	CCNNGG	4 cut(s)	268, 511, 512, 535
BseGI	GGATG	5 cut(s)	16, 325, 523, 531, 982
BseLI	CCNNNNNNNGG	2 cut(s)	541, 973
BseMII	CTCAG	3 cut(s)	800, 860, 1034
BseNI	ACTGG	3 cut(s)	307, 718, 1054
BseRI	GAGGAG	1 cut(s)	774
BseXI	GCAGC	2 cut(s)	97, 295
BsgI	GTGCAG	1 cut(s)	1209
BshFI	GGCC	2 cut(s)	179, 355
BsiHKAI	GWGCWC	1 cut(s)	1122
BslI	CCNNNNNNNGG	2 cut(s)	541, 973
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	179, 355
Bso31I	GGTCTC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	1122
Bsp143I	GATC	3 cut(s)	85, 448, 832
Bsp1720I	GCTNAGC	1 cut(s)	915
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	179, 355
BspCNI	CTCAG	3 cut(s)	799, 861, 1033
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	2 cut(s)	1042, 1111
BspMI	ACCTGC	1 cut(s)	1136
BspPI	GGATC	2 cut(s)	443, 840
BspTI	CTTAAG	1 cut(s)	1162
BspTNI	GGTCTC	1 cut(s)	227
BsrI	ACTGG	3 cut(s)	307, 718, 1054
BssECI	CCNNGG	4 cut(s)	268, 511, 512, 535
BssMI	GATC	3 cut(s)	85, 448, 832
BssNI	GRCGYC	1 cut(s)	988
Bst2UI	CCWGG	5 cut(s)	270, 395, 513, 921, 1092
Bst4CI	ACNGT	4 cut(s)	706, 796, 928, 1183
Bst6I	CTCTTC	3 cut(s)	180, 188, 567
BstACI	GRCGYC	1 cut(s)	988
BstAFI	CTTAAG	1 cut(s)	1162
BstC8I	GCNNGC	5 cut(s)	387, 391, 644, 843, 1068
BstDEI	CTNAG	7 cut(s)	147, 369, 494, 786, 869, 915, 1020
BstDSI	CCRYGG	1 cut(s)	535
BstENI	CCTNNNNNAGG	1 cut(s)	971
BstF5I	GGATG	5 cut(s)	16, 325, 523, 531, 982
BstH2I	RGCGCY	1 cut(s)	783
BstHHI	GCGC	2 cut(s)	346, 782
BstKTI	GATC	3 cut(s)	88, 451, 835
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	3 cut(s)	85, 448, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 551, 652
BstNI	CCWGG	5 cut(s)	270, 395, 513, 921, 1092
BstNSI	RCATGY	3 cut(s)	260, 278, 1018
BstSCI	CCNGG	5 cut(s)	268, 393, 511, 919, 1090
BstSFI	CTRYAG	3 cut(s)	612, 1038, 1107
BstV1I	GCAGC	2 cut(s)	97, 295
BstV2I	GAAGAC	1 cut(s)	854
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	179, 355
BtgI	CCRYGG	1 cut(s)	535
BtsCI	GGATG	5 cut(s)	16, 325, 523, 531, 982
BtsIMutI	CAGTG	2 cut(s)	933, 1047
BveI	ACCTGC	1 cut(s)	1136
Cac8I	GCNNGC	5 cut(s)	387, 391, 644, 843, 1068
CaiI	CAGNNNCTG	1 cut(s)	635
CfoI	GCGC	2 cut(s)	346, 782
Cfr13I	GGNCC	2 cut(s)	178, 353
CseI	GACGC	2 cut(s)	109, 726
Csp6I	GTAC	2 cut(s)	125, 638
CviAII	CATG	7 cut(s)	56, 80, 221, 257, 275, 295, 1015
CviQI	GTAC	2 cut(s)	125, 638
DdeI	CTNAG	7 cut(s)	147, 369, 494, 786, 869, 915, 1020
DpnI	GATC	3 cut(s)	87, 450, 834
DpnII	GATC	3 cut(s)	85, 448, 832
Eam1104I	CTCTTC	3 cut(s)	180, 188, 567
EarI	CTCTTC	3 cut(s)	180, 188, 567
Ecl136II	GAGCTC	1 cut(s)	1120
Eco24I	GRGCYC	1 cut(s)	1122
Eco31I	GGTCTC	1 cut(s)	227
Eco32I	GATATC	1 cut(s)	1045
Eco53kI	GAGCTC	1 cut(s)	1120
Eco57I	CTGAAG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	1120
EcoNI	CCTNNNNNAGG	1 cut(s)	971
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	5 cut(s)	268, 393, 511, 919, 1090
EcoRV	GATATC	1 cut(s)	1045
EcoT22I	ATGCAT	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	1122
FaeI	CATG	7 cut(s)	59, 83, 224, 260, 278, 298, 1018
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FatI	CATG	7 cut(s)	55, 79, 220, 256, 274, 294, 1014
FauNDI	CATATG	1 cut(s)	26
Fnu4HI	GCNGC	2 cut(s)	111, 309
FokI	GGATG	5 cut(s)	23, 332, 518, 530, 989
FriOI	GRGCYC	1 cut(s)	1122
Fsp4HI	GCNGC	2 cut(s)	111, 309
GlaI	GCGC	2 cut(s)	345, 781
GluI	GCNGC	2 cut(s)	111, 309
GsuI	CTGGAG	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	783
HaeIII	GGCC	2 cut(s)	179, 355
HgaI	GACGC	2 cut(s)	109, 726
HhaI	GCGC	2 cut(s)	346, 782
Hin1I	GRCGYC	1 cut(s)	988
Hin1II	CATG	7 cut(s)	59, 83, 224, 260, 278, 298, 1018
Hin6I	GCGC	2 cut(s)	344, 780
HinP1I	GCGC	2 cut(s)	344, 780
HinfI	GANTC	2 cut(s)	608, 760
HphI	GGTGA	4 cut(s)	758, 811, 860, 1106
Hpy166II	GTNNAC	3 cut(s)	262, 488, 986
Hpy188I	TCNGA	2 cut(s)	789, 870
Hpy188III	TCNNGA	5 cut(s)	452, 629, 757, 820, 1139
Hpy8I	GTNNAC	3 cut(s)	262, 488, 986
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	131, 974
HpyCH4III	ACNGT	4 cut(s)	706, 796, 928, 1183
HpyCH4IV	ACGT	3 cut(s)	988, 1074, 1101
HpyCH4V	TGCA	9 cut(s)	24, 113, 254, 389, 559, 735, 1040, 1109, 1190
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 551, 652
HpyF3I	CTNAG	7 cut(s)	147, 369, 494, 786, 869, 915, 1020
HpySE526I	ACGT	3 cut(s)	988, 1074, 1101
Hsp92I	GRCGYC	1 cut(s)	988
Hsp92II	CATG	7 cut(s)	59, 83, 224, 260, 278, 298, 1018
HspAI	GCGC	2 cut(s)	344, 780
Kzo9I	GATC	3 cut(s)	85, 448, 832
LmnI	GCTCC	3 cut(s)	305, 463, 787
Lsp1109I	GCAGC	2 cut(s)	97, 295
LweI	GCATC	1 cut(s)	427
MaeII	ACGT	3 cut(s)	988, 1074, 1101
MaeIII	GTNAC	5 cut(s)	768, 799, 848, 1094, 1102
MalI	GATC	3 cut(s)	87, 450, 834
MboI	GATC	3 cut(s)	85, 448, 832
MboII	GAAGA	9 cut(s)	146, 197, 202, 205, 584, 686, 854, 857, 899
MfeI	CAATTG	2 cut(s)	207, 669
MhlI	GDGCHC	1 cut(s)	1122
MluCI	AATT	8 cut(s)	168, 207, 591, 599, 669, 687, 909, 1061
MmeI	TCCRAC	1 cut(s)	441
Mph1103I	ATGCAT	1 cut(s)	26
MroXI	GAANNNNTTC	2 cut(s)	378, 624
MseI	TTAA	5 cut(s)	5, 602, 738, 1077, 1163
MslI	CAYNNNNRTG	2 cut(s)	60, 415
MspA1I	CMGCKG	1 cut(s)	1070
MspCI	CTTAAG	1 cut(s)	1162
MspR9I	CCNGG	5 cut(s)	270, 395, 513, 921, 1092
MunI	CAATTG	2 cut(s)	207, 669
MvaI	CCWGG	5 cut(s)	270, 395, 513, 921, 1092
MwoI	GCNNNNNNNGC	3 cut(s)	352, 551, 652
NdeI	CATATG	1 cut(s)	26
NdeII	GATC	3 cut(s)	85, 448, 832
NlaIII	CATG	7 cut(s)	59, 83, 224, 260, 278, 298, 1018
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	4 cut(s)	799, 848, 1094, 1102
NsiI	ATGCAT	1 cut(s)	26
NspI	RCATGY	3 cut(s)	260, 278, 1018
OliI	CACNNNNGTG	1 cut(s)	415
PasI	CCCWGGG	1 cut(s)	512
PciI	ACATGT	1 cut(s)	256
PdmI	GAANNNNTTC	2 cut(s)	378, 624
PfeI	GAWTC	2 cut(s)	608, 760
PkrI	GCNGC	2 cut(s)	112, 310
PscI	ACATGT	1 cut(s)	256
PshBI	ATTAAT	1 cut(s)	602
Psp124BI	GAGCTC	1 cut(s)	1122
Psp6I	CCWGG	5 cut(s)	268, 393, 511, 919, 1090
PspGI	CCWGG	5 cut(s)	268, 393, 511, 919, 1090
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	2 cut(s)	178, 353
PsrI	GAACNNNNNNTAC	2 cut(s)	694, 726
PstI	CTGCAG	2 cut(s)	1042, 1111
PstNI	CAGNNNCTG	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	1070
RsaI	GTAC	2 cut(s)	126, 639
RsaNI	GTAC	2 cut(s)	125, 638
RseI	CAYNNNNRTG	2 cut(s)	60, 415
SacI	GAGCTC	1 cut(s)	1122
SaqAI	TTAA	5 cut(s)	5, 602, 738, 1077, 1163
SatI	GCNGC	2 cut(s)	111, 309
Sau3AI	GATC	3 cut(s)	85, 448, 832
Sau96I	GGNCC	2 cut(s)	178, 353
ScrFI	CCNGG	5 cut(s)	270, 395, 513, 921, 1092
SduI	GDGCHC	1 cut(s)	1122
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	3 cut(s)	612, 1038, 1107
SmiMI	CAYNNNNRTG	2 cut(s)	60, 415
SmlI	CTYRAG	1 cut(s)	1162
SmoI	CTYRAG	1 cut(s)	1162
Sse9I	AATT	8 cut(s)	168, 207, 591, 599, 669, 687, 909, 1061
SsiI	CCGC	1 cut(s)	131
SstI	GAGCTC	1 cut(s)	1122
StyD4I	CCNGG	5 cut(s)	268, 393, 511, 919, 1090
TaaI	ACNGT	4 cut(s)	706, 796, 928, 1183
TaiI	ACGT	3 cut(s)	991, 1077, 1104
TaqI	TCGA	3 cut(s)	84, 471, 756
TasI	AATT	8 cut(s)	168, 207, 591, 599, 669, 687, 909, 1061
TfiI	GAWTC	2 cut(s)	608, 760
Tru1I	TTAA	5 cut(s)	5, 602, 738, 1077, 1163
Tru9I	TTAA	5 cut(s)	5, 602, 738, 1077, 1163
TscAI	CASTG	2 cut(s)	933, 1054
TseFI	GTSAC	4 cut(s)	799, 848, 1094, 1102
TseI	GCWGC	2 cut(s)	110, 308
Tsp45I	GTSAC	4 cut(s)	799, 848, 1094, 1102
TspDTI	ATGAA	6 cut(s)	27, 180, 534, 585, 633, 993
TspGWI	ACGGA	3 cut(s)	105, 473, 524
TspRI	CASTG	2 cut(s)	933, 1054
Vha464I	CTTAAG	1 cut(s)	1162
VspI	ATTAAT	1 cut(s)	602
XagI	CCTNNNNNAGG	1 cut(s)	971
XceI	RCATGY	3 cut(s)	260, 278, 1018
XmnI	GAANNNNTTC	2 cut(s)	378, 624
ZraI	GACGTC	1 cut(s)	989
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.