FvH4_2g26071

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0019672
Physical Location & Seq
Forward (+)
20985784 .. 20986620
837 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26071.t1

Sequence Viewer

Length: 675 bp
ATGAAACCTGAACACAAAGAAGCACTCCTCAAGTTCGTCACTACAAATAAGAGGATCCTCGCCCTTGTGGGTGTAGGCCTCCTCCTCCTCGTATCTTGCATCTTCGTGTTCCTCTACGCCATTCCTCCCAGGCCTTCCGTCACCATTACTAATGCCTCCCTCACCCAATTCAAGCTCATCGGCAACAATCTCAACTACAACCTTACCCTCGACCTCGCCGTCTACAACACCAACAAAAAAAAAGCCATGCAATACAAGAGCGTCCAAGTTGTCGCCGAGTATGCGAATCAGTACTTTGCTACGAGTTCCCTGCCACCCTTCAGACAGAGTCACCAGAACACGACCATCCTGCATGGAAATCTTCAAGGGCAGCCGTCGATGAGGTTTTGGGATAGTGACCTAGTTCAGTTTAAGGCGGAGAGCGCTGCGGGTGTTTACAGTATTGACGTGGAGGCTACCATGAAGGTAAAAGAGTACGTAAAGTTTTATAAACGTAACTGGATCTGCAAGCTGAAGATTCCTTTGAGTTCTAGTGAAGCATCTCCATCTCCTAGTAGTTTCAGGGATGTAAACTGTAAGGCTGAGAAACATAAAAGGCGGAAACCCAGAGTTCCACGGAAAAAGACCTCGAGAAAAACAATGGTGAGGATTAATATCATTAATATTATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

225

Amino Acids

25.53

Weight (kDa)

10.11

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019672)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26071
rosa_chinensis RchiOBHm_Chr5g0069811
rosa_laevigata RLG00000036098
rosa_multiflora Rmu_co8283993.1_g000001 Rmu_sc0000726.1_g000002
rosa_samantha Rh5AG456900 Rh5DG487300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AasI GACNNNNNNGTC 1 cut(s) 218
AccI GTMKAC 1 cut(s) 222
AciI CCGC 3 cut(s) 416, 428, 598
AclWI GGATC 3 cut(s) 49, 62, 509
AcuI CTGAAG 2 cut(s) 304, 533
AfaI GTAC 2 cut(s) 293, 476
AfeI AGCGCT 1 cut(s) 424
AgsI TTSAA 2 cut(s) 172, 365
AjiI CACGTC 1 cut(s) 448
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 2 cut(s) 175, 511
AluI AGCT 2 cut(s) 175, 511
AlwI GGATC 3 cut(s) 49, 62, 509
Ama87I CYCGRG 1 cut(s) 628
Aor51HI AGCGCT 1 cut(s) 424
AoxI GGCC 2 cut(s) 76, 131
ApeKI GCWGC 2 cut(s) 370, 425
AseI ATTAAT 2 cut(s) 651, 660
AspLEI GCGC 1 cut(s) 425
AsuHPI GGTGA 4 cut(s) 133, 154, 323, 655
AvaI CYCGRG 1 cut(s) 628
BamHI GGATCC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 382, 412
BccI CCATC 2 cut(s) 353, 553
BceAI ACGGC 2 cut(s) 203, 358
BcgI CGANNNNNNTGC 4 cut(s) 292, 326, 331, 365
BciT130I CCWGG 1 cut(s) 130
BfaI CTAG 3 cut(s) 401, 531, 552
BfoI RGCGCY 1 cut(s) 426
BisI GCNGC 2 cut(s) 371, 426
BlsI GCNGC 2 cut(s) 372, 427
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 628
BmgBI CACGTC 1 cut(s) 448
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 108, 548
BpuEI CTTGAG 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 478
BsaBI GATNNNNATC 1 cut(s) 653
BsaJI CCNNGG 2 cut(s) 128, 614
Bse1I ACTGG 1 cut(s) 503
Bse8I GATNNNNATC 1 cut(s) 653
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 2 cut(s) 128, 614
BseGI GGATG 2 cut(s) 345, 571
BseJI GATNNNNATC 1 cut(s) 653
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 1 cut(s) 503
BseRI GAGGAG 4 cut(s) 17, 71, 74, 77
BseXI GCAGC 2 cut(s) 382, 412
BshFI GGCC 2 cut(s) 78, 133
BsiHKCI CYCGRG 1 cut(s) 628
BsnI GGCC 2 cut(s) 78, 133
BsoBI CYCGRG 1 cut(s) 628
Bsp143I GATC 2 cut(s) 54, 501
BspACI CCGC 3 cut(s) 416, 428, 598
BspANI GGCC 2 cut(s) 78, 133
BspCNI CTCAG 1 cut(s) 574
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 3 cut(s) 49, 62, 509
BsrI ACTGG 1 cut(s) 503
BssECI CCNNGG 2 cut(s) 128, 614
BssMI GATC 2 cut(s) 54, 501
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 2 cut(s) 440, 575
BstBAI YACGTR 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 1 cut(s) 582
BstDSI CCRYGG 1 cut(s) 614
BstF5I GGATG 2 cut(s) 345, 571
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 2 cut(s) 57, 504
BstMBI GATC 2 cut(s) 54, 501
BstMWI GCNNNNNNNGC 2 cut(s) 281, 422
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstSNI TACGTA 1 cut(s) 478
BstV1I GCAGC 2 cut(s) 382, 412
BstX2I RGATCY 2 cut(s) 54, 501
BstYI RGATCY 2 cut(s) 54, 501
BsuRI GGCC 2 cut(s) 78, 133
BtgI CCRYGG 1 cut(s) 614
BtrI CACGTC 1 cut(s) 448
BtsCI GGATG 2 cut(s) 345, 571
Cac8I GCNNGC 1 cut(s) 509
CfoI GCGC 1 cut(s) 425
CseI GACGC 1 cut(s) 250
Csp6I GTAC 2 cut(s) 292, 475
CviAII CATG 3 cut(s) 247, 353, 460
CviJI RGCY 8 cut(s) 78, 133, 175, 245, 373, 455, 511, 581
CviKI_1 RGCY 8 cut(s) 78, 133, 175, 245, 373, 455, 511, 581
CviQI GTAC 2 cut(s) 292, 475
DdeI CTNAG 1 cut(s) 582
DpnI GATC 2 cut(s) 56, 503
DpnII GATC 2 cut(s) 54, 501
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EciI GGCGGA 2 cut(s) 431, 613
Eco105I TACGTA 1 cut(s) 478
Eco147I AGGCCT 2 cut(s) 78, 133
Eco47III AGCGCT 1 cut(s) 424
Eco57I CTGAAG 2 cut(s) 304, 533
Eco88I CYCGRG 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 128
FaeI CATG 3 cut(s) 250, 356, 463
FaiI YATR 6 cut(s) 248, 282, 354, 461, 489, 591
FatI CATG 3 cut(s) 246, 352, 459
FauI CCCGC 1 cut(s) 421
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 371, 426
FokI GGATG 2 cut(s) 332, 578
Fsp4HI GCNGC 2 cut(s) 371, 426
FspBI CTAG 3 cut(s) 401, 531, 552
GlaI GCGC 1 cut(s) 424
GluI GCNGC 2 cut(s) 371, 426
HaeII RGCGCY 1 cut(s) 426
HaeIII GGCC 2 cut(s) 78, 133
HgaI GACGC 1 cut(s) 250
HhaI GCGC 1 cut(s) 425
Hin1II CATG 3 cut(s) 250, 356, 463
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HinfI GANTC 3 cut(s) 286, 328, 517
HphI GGTGA 4 cut(s) 133, 154, 323, 655
Hpy166II GTNNAC 3 cut(s) 223, 436, 571
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 1 cut(s) 630
Hpy8I GTNNAC 3 cut(s) 223, 436, 571
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 3 cut(s) 144, 328, 457
HpyCH4III ACNGT 2 cut(s) 440, 575
HpyCH4IV ACGT 3 cut(s) 447, 477, 493
HpyCH4V TGCA 4 cut(s) 99, 250, 352, 507
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 422
HpyF3I CTNAG 1 cut(s) 582
HpySE526I ACGT 3 cut(s) 447, 477, 493
Hsp92II CATG 3 cut(s) 250, 356, 463
HspAI GCGC 1 cut(s) 423
Kzo9I GATC 2 cut(s) 54, 501
LpnPI CCDG 9 cut(s) 21, 115, 142, 323, 347, 362, 484, 547, 619
Lsp1109I GCAGC 2 cut(s) 382, 412
LweI GCATC 2 cut(s) 108, 548
MaeI CTAG 3 cut(s) 401, 531, 552
MaeII ACGT 3 cut(s) 447, 477, 493
MaeIII GTNAC 5 cut(s) 37, 139, 329, 395, 494
MalI GATC 2 cut(s) 56, 503
MboI GATC 2 cut(s) 54, 501
MboII GAAGA 3 cut(s) 94, 353, 526
MflI RGATCY 2 cut(s) 54, 501
MluCI AATT 1 cut(s) 167
MlyI GAGTC 1 cut(s) 337
MseI TTAA 3 cut(s) 411, 651, 660
MslI CAYNNNNRTG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MwoI GCNNNNNNNGC 2 cut(s) 281, 422
NdeII GATC 2 cut(s) 54, 501
NlaIII CATG 3 cut(s) 250, 356, 463
NlaIV GGNNCC 1 cut(s) 56
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 4 cut(s) 37, 139, 329, 395
PaeR7I CTCGAG 1 cut(s) 628
PceI AGGCCT 2 cut(s) 78, 133
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 2 cut(s) 286, 517
PflFI GACNNNGTC 1 cut(s) 327
PkrI GCNGC 2 cut(s) 372, 427
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Ppu21I YACGTR 1 cut(s) 478
PshBI ATTAAT 2 cut(s) 651, 660
PsiI TTATAA 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 56
PsuI RGATCY 2 cut(s) 54, 501
PsyI GACNNNGTC 1 cut(s) 327
RsaI GTAC 2 cut(s) 293, 476
RsaNI GTAC 2 cut(s) 292, 475
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 3 cut(s) 411, 651, 660
SatI GCNGC 2 cut(s) 371, 426
Sau3AI GATC 2 cut(s) 54, 501
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 130
SfaNI GCATC 2 cut(s) 108, 548
Sfr274I CTCGAG 1 cut(s) 628
SlaI CTCGAG 1 cut(s) 628
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 2 cut(s) 29, 628
SmoI CTYRAG 2 cut(s) 29, 628
SnaBI TACGTA 1 cut(s) 478
Sse9I AATT 1 cut(s) 167
SseBI AGGCCT 2 cut(s) 78, 133
SsiI CCGC 3 cut(s) 416, 428, 598
SspI AATATT 1 cut(s) 664
SspMI CTAG 3 cut(s) 401, 531, 552
StuI AGGCCT 2 cut(s) 78, 133
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 2 cut(s) 440, 575
TaiI ACGT 3 cut(s) 450, 480, 496
TaqI TCGA 3 cut(s) 210, 377, 629
TasI AATT 1 cut(s) 167
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 2 cut(s) 286, 517
Tru1I TTAA 3 cut(s) 411, 651, 660
Tru9I TTAA 3 cut(s) 411, 651, 660
TseFI GTSAC 4 cut(s) 37, 139, 329, 395
TseI GCWGC 2 cut(s) 370, 425
Tsp45I GTSAC 4 cut(s) 37, 139, 329, 395
TspDTI ATGAA 2 cut(s) 17, 476
TspGWI ACGGA 2 cut(s) 127, 631
Tth111I GACNNNGTC 1 cut(s) 327
VspI ATTAAT 2 cut(s) 651, 660
XhoI CTCGAG 1 cut(s) 628
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 3 cut(s) 401, 531, 552
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.