Rh5AG456900

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019672
Physical Location & Seq
Reverse (-)
78352152 .. 78356417
4266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG456900.1

Sequence Viewer

Length: 453 bp
ATGGATAAGAGCTTTTCGACCTCTCTCCACCGCTATACTTGCAGCGACTTTGACCGGGTCCTTGATTGGGTCGGAATCACTAATGCCTCTCTCACCCAATTCAAACTCAGCGAGGAATCTCTCAACTACAACATTGCACTAGACCTCGCCATCAAAGACACCAACAAAGTGTTTGCTATTCACTACAACAGCATCGAACTCGTTGCCAAGTATGGGAAGGAAGGGTTTGCTTTTATGAGTTCCCTGCCTCACTTCAAACAACGCTACAAGAACACGACCATTCTGCACACAATTCTTCAAGGGCAGCAGTTGGTGAGGTTTTCGGAAAGTGAGCTCTCCCGGTTTAACTTGGAGACTGTTGCTGGAGTTTACGGATACAAGATCAAAACTAAATTTCAACCCAACATTAATAAAGTAGATGATTGCACATCTGCAGGTTCAGAGGCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

150

Amino Acids

17.05

Weight (kDa)

7.71

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019672)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26071
rosa_chinensis RchiOBHm_Chr5g0069811
rosa_laevigata RLG00000036098
rosa_multiflora Rmu_co8283993.1_g000001 Rmu_sc0000726.1_g000002
rosa_samantha Rh5AG456900 Rh5DG487300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 425
AciI CCGC 1 cut(s) 31
AcsI RAATTY 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 67, 213
AgsI TTSAA 4 cut(s) 103, 256, 299, 398
AluBI AGCT 2 cut(s) 12, 334
AluI AGCT 2 cut(s) 12, 334
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 347
ApeKI GCWGC 2 cut(s) 42, 304
ApoI RAATTY 1 cut(s) 392
AseI ATTAAT 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 2 cut(s) 56, 340
AsuHPI GGTGA 2 cut(s) 85, 325
AvaII GGWCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 54, 316
BccI CCATC 1 cut(s) 158
BcgI CGANNNNNNTGC 6 cut(s) 181, 185, 215, 219, 265, 299
BciVI GTATCC 1 cut(s) 368
BcnI CCSGG 2 cut(s) 56, 340
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 432
BfuAI ACCTGC 1 cut(s) 425
BfuI GTATCC 1 cut(s) 368
BisI GCNGC 2 cut(s) 43, 305
BlsI GCNGC 2 cut(s) 44, 306
Bme1390I CCNGG 2 cut(s) 56, 340
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 2 cut(s) 56, 340
BmsI GCATC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 384
BpuMI CCSGG 2 cut(s) 56, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 213
Bse3DI GCAATG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 67, 213
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 121
BseXI GCAGC 2 cut(s) 54, 316
BsgI GTGCAG 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 2 cut(s) 55, 340
BslI CCNNNNNNNGG 2 cut(s) 67, 213
BsmAI GTCTC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 1 cut(s) 381
BspACI CCGC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 59
BspMAI CTGCAG 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 132
BssMI GATC 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 107
BstKTI GATC 1 cut(s) 384
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 1 cut(s) 381
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 450
BstSCI CCNGG 2 cut(s) 54, 338
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 2 cut(s) 54, 316
BsuI GTATCC 1 cut(s) 368
BveI ACCTGC 1 cut(s) 425
Cfr13I GGNCC 1 cut(s) 58
CviAII CATG 1 cut(s) 447
CviJI RGCY 2 cut(s) 12, 334
CviKI_1 RGCY 2 cut(s) 12, 334
DdeI CTNAG 1 cut(s) 107
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
Ecl136II GAGCTC 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 1 cut(s) 450
FaiI YATR 4 cut(s) 36, 213, 236, 448
FatI CATG 1 cut(s) 446
Fnu4HI GCNGC 2 cut(s) 43, 305
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 43, 305
FspBI CTAG 1 cut(s) 140
GluI GCNGC 2 cut(s) 43, 305
GsuI CTGGAG 1 cut(s) 384
HapII CCGG 2 cut(s) 55, 340
Hin1II CATG 1 cut(s) 450
HinfI GANTC 2 cut(s) 75, 116
HpaII CCGG 2 cut(s) 55, 340
HphI GGTGA 2 cut(s) 85, 325
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 3 cut(s) 74, 325, 442
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 2 cut(s) 211, 215
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4V TGCA 5 cut(s) 42, 137, 286, 426, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 1 cut(s) 107
Hsp92II CATG 1 cut(s) 450
Kzo9I GATC 1 cut(s) 381
LpnPI CCDG 5 cut(s) 68, 257, 348, 353, 420
Lsp1109I GCAGC 2 cut(s) 54, 316
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 140
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 3 cut(s) 98, 291, 392
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 7 cut(s) 31, 97, 106, 155, 258, 309, 436
MseI TTAA 3 cut(s) 345, 408, 451
MspI CCGG 2 cut(s) 55, 340
MspR9I CCNGG 2 cut(s) 56, 340
MwoI GCNNNNNNNGC 1 cut(s) 39
NciI CCSGG 2 cut(s) 56, 340
NdeII GATC 1 cut(s) 381
NlaIII CATG 1 cut(s) 450
NlaIV GGNNCC 1 cut(s) 59
NspI RCATGY 1 cut(s) 450
PfeI GAWTC 2 cut(s) 75, 116
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 44, 306
PpuMI RGGWCCY 1 cut(s) 58
PshBI ATTAAT 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 58
PspPPI RGGWCCY 1 cut(s) 58
PstI CTGCAG 1 cut(s) 436
PsyI GACNNNGTC 1 cut(s) 56
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 3 cut(s) 345, 408, 451
SatI GCNGC 2 cut(s) 43, 305
Sau3AI GATC 1 cut(s) 381
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 56, 340
SduI GDGCHC 1 cut(s) 336
SetI ASST 6 cut(s) 14, 23, 147, 320, 336, 439
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 432
SinI GGWCC 1 cut(s) 58
Sse9I AATT 3 cut(s) 98, 291, 392
SsiI CCGC 1 cut(s) 31
SspMI CTAG 1 cut(s) 140
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 54, 338
TaaI ACNGT 1 cut(s) 358
TaqI TCGA 2 cut(s) 17, 195
TasI AATT 3 cut(s) 98, 291, 392
TfiI GAWTC 2 cut(s) 75, 116
Tru1I TTAA 3 cut(s) 345, 408, 451
Tru9I TTAA 3 cut(s) 345, 408, 451
TseI GCWGC 2 cut(s) 42, 304
TspGWI ACGGA 1 cut(s) 387
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 58
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 1 cut(s) 392
XceI RCATGY 1 cut(s) 450
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.