Rmu_sc0000726.1_g000002

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000726.1
OG0019672
Physical Location & Seq
Forward (+)
8883 .. 9443
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000726.1_g000002.1.cds

Sequence Viewer

Length: 561 bp
atgagaggtgaccaaaaaaggtgtctcggcatcctcttctgcctttccggcataggccttatcgtactcatactatgcatcttgttcttctttcctcccgctcttactgtcagaatcactaatgcctctctcacccaattcaaactcagcgaggaatctctcaactacaaccttgcactagacctcgccatcaaagacaccaacaaagtgtttgctattcactacaacagcatcgaactcgttgccaagtatgggaaggaagggtttgcttttatgagttccctgcctcacttcaaacaacgctacaagaacacgaccattctgcacacaactcttcaagggcagcagttggtgaggttttcggaacgtgagctctcccggtttaacttggagactgttgctggagtttacggtattgatgcggtcgcaactatgcaaataaaaaaatctgtatccgcaagggtttacaaaagtgaatggatctgcagactaatgcttcctttgagttctgaccaagcattttcgagtttcaaggctataaagtgtattaattcaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

186

Amino Acids

21.0

Weight (kDa)

9.46

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019672)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26071
rosa_chinensis RchiOBHm_Chr5g0069811
rosa_laevigata RLG00000036098
rosa_multiflora Rmu_co8283993.1_g000001 Rmu_sc0000726.1_g000002
rosa_samantha Rh5AG456900 Rh5DG487300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 101
AciI CCGC 3 cut(s) 99, 422, 456
AclWI GGATC 1 cut(s) 488
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 5 cut(s) 142, 295, 338, 532, 555
AluBI AGCT 1 cut(s) 373
AluI AGCT 1 cut(s) 373
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 2 cut(s) 29, 386
AlwI GGATC 1 cut(s) 488
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 343
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AseI ATTAAT 1 cut(s) 549
AsuC2I CCSGG 1 cut(s) 379
AsuHPI GGTGA 3 cut(s) 20, 124, 364
BanII GRGCYC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 1 cut(s) 355
BccI CCATC 1 cut(s) 197
BcgI CGANNNNNNTGC 6 cut(s) 220, 224, 254, 258, 304, 338
BciVI GTATCC 1 cut(s) 463
BcnI CCSGG 1 cut(s) 379
BcoDI GTCTC 2 cut(s) 29, 386
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 484
BfuI GTATCC 1 cut(s) 463
BglI GCCNNNNNGGC 1 cut(s) 48
BisI GCNGC 1 cut(s) 344
BlsI GCNGC 1 cut(s) 345
Bme1390I CCNGG 1 cut(s) 379
BmrFI CCNGG 1 cut(s) 379
BmsI GCATC 4 cut(s) 39, 87, 240, 409
BpmI CTGGAG 1 cut(s) 423
BpuMI CCSGG 1 cut(s) 379
Bsc4I CCNNNNNNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 308
Bsh1285I CGRYCG 1 cut(s) 426
BshFI GGCC 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 2 cut(s) 48, 379
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 2 cut(s) 29, 386
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 1 cut(s) 480
BspACI CCGC 3 cut(s) 99, 422, 456
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 488
BspPI GGATC 1 cut(s) 488
BsrBI CCGCTC 1 cut(s) 101
BssMI GATC 1 cut(s) 480
Bst4CI ACNGT 3 cut(s) 109, 397, 413
Bst6I CTCTTC 2 cut(s) 41, 339
BstDEI CTNAG 1 cut(s) 146
BstEII GGTNACC 1 cut(s) 8
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 1 cut(s) 483
BstMAI GTCTC 2 cut(s) 29, 386
BstMBI GATC 1 cut(s) 480
BstMCI CGRYCG 1 cut(s) 426
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstPI GGTNACC 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 484
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 480
BstYI RGATCY 1 cut(s) 480
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 30
Csp6I GTAC 1 cut(s) 65
CviJI RGCY 3 cut(s) 57, 373, 536
CviKI_1 RGCY 3 cut(s) 57, 373, 536
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 482
DpnII GATC 1 cut(s) 480
Eam1104I CTCTTC 2 cut(s) 41, 339
EarI CTCTTC 2 cut(s) 41, 339
Ecl136II GAGCTC 1 cut(s) 373
Eco147I AGGCCT 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 375
Eco53kI GAGCTC 1 cut(s) 373
Eco91I GGTNACC 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 373
EcoO65I GGTNACC 1 cut(s) 8
EcoT22I ATGCAT 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 375
FaiI YATR 7 cut(s) 53, 71, 76, 252, 275, 434, 539
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 344
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 344
FspBI CTAG 1 cut(s) 179
GluI GCNGC 1 cut(s) 344
GsuI CTGGAG 1 cut(s) 423
HaeIII GGCC 1 cut(s) 57
HapII CCGG 2 cut(s) 48, 379
HinfI GANTC 2 cut(s) 114, 155
HpaII CCGG 2 cut(s) 48, 379
HphI GGTGA 3 cut(s) 20, 124, 364
Hpy166II GTNNAC 2 cut(s) 409, 466
Hpy188I TCNGA 3 cut(s) 113, 364, 511
Hpy8I GTNNAC 2 cut(s) 409, 466
HpyAV CCTTC 2 cut(s) 250, 254
HpyCH4III ACNGT 3 cut(s) 109, 397, 413
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 5 cut(s) 78, 176, 325, 436, 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 367
Kzo9I GATC 1 cut(s) 480
LpnPI CCDG 4 cut(s) 61, 296, 387, 392
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 4 cut(s) 39, 87, 240, 409
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 482
MbiI CCGCTC 1 cut(s) 101
MboI GATC 1 cut(s) 480
MboII GAAGA 3 cut(s) 28, 79, 326
MflI RGATCY 1 cut(s) 480
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 3 cut(s) 137, 550, 555
MnlI CCTC 7 cut(s) 44, 105, 136, 145, 194, 297, 348
Mph1103I ATGCAT 1 cut(s) 80
MseI TTAA 3 cut(s) 384, 549, 559
MspI CCGG 2 cut(s) 48, 379
MspR9I CCNGG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 48
NciI CCSGG 1 cut(s) 379
NdeII GATC 1 cut(s) 480
NmeAIII GCCGAG 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 80
PceI AGGCCT 1 cut(s) 57
PfeI GAWTC 2 cut(s) 114, 155
PkrI GCNGC 1 cut(s) 345
PshBI ATTAAT 1 cut(s) 549
Psp124BI GAGCTC 1 cut(s) 375
PspEI GGTNACC 1 cut(s) 8
PstI CTGCAG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 480
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SacI GAGCTC 1 cut(s) 375
SaqAI TTAA 3 cut(s) 384, 549, 559
SatI GCNGC 1 cut(s) 344
Sau3AI GATC 1 cut(s) 480
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 1 cut(s) 375
SetI ASST 7 cut(s) 10, 23, 174, 186, 359, 370, 375
SfaNI GCATC 4 cut(s) 39, 87, 240, 409
SfcI CTRYAG 1 cut(s) 484
Sse9I AATT 3 cut(s) 137, 550, 555
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 3 cut(s) 99, 422, 456
SspMI CTAG 1 cut(s) 179
SstI GAGCTC 1 cut(s) 375
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 377
TaaI ACNGT 3 cut(s) 109, 397, 413
TaiI ACGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 234, 524
TasI AATT 3 cut(s) 137, 550, 555
TfiI GAWTC 2 cut(s) 114, 155
Tru1I TTAA 3 cut(s) 384, 549, 559
Tru9I TTAA 3 cut(s) 384, 549, 559
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 1 cut(s) 343
Tsp45I GTSAC 1 cut(s) 8
VspI ATTAAT 1 cut(s) 549
XspI CTAG 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.