RLG00000036098

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019672
Physical Location & Seq
Reverse (-)
75734644 .. 75736774
2131 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036098

Sequence Viewer

Length: 726 bp
ATGGCTGACCGATTGGTTTTGACGGTGGAAATTGGTGGCTGCAAAGGGTTTCACAGTTCACGACCAACTCATGGGGTGTATAGTATCGACTTTGGGGAGCGCGGGAAAGTGGAGCTTTTTCCCTCCAAAACTGCAATGACGATTAAGACAGCAAAAGAAGACGACGAAGCACACTTGAATCCTGACGCACATGACCACTGCAATGTTGCCAAAGATCAAGGCCTTAGCGTACTCATACTATGCATCTTCTTCGTCTTTCCTCCCGCTCCTACTGTCAGAATCACTAATGCCTCTCTCACCCAATTCAAACTCAGCGATAAATCTCTCAACTACAACCTTGCACTAGATGTCGCCGTCCAAGACACCGACAAAGTGTTTGCTATTCACTACAATAGCATCGAACTCGTTGCCAAGTATGGGAAGGAAGGGTTTGCTTTTATGAGTTCCCCGCCTCACTTCAAACAACGCTACAAGAACACGACCATTCTGCACACAGTTCTTCAAGGGCAGCAGTTGGTGAGGTTTTCGGAAAGTGAGCTCTCCCGGTTTAACTTGGAGAGTGTTGCTGGAGTTTACGGTATTGATGTGGTCGCGACTATGCAAATAAAAAAATCTGTATCCGCAAGGGTTTACAAACGTGAATGGATCTGCAGACTAATGCTTTTTTTGAGTTCTGACCAAGCATTTTCTAGTTTCAAGGCTATAAAGTGTATTAATTCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

242

Amino Acids

26.96

Weight (kDa)

8.73

Isoelectric Point (pI)

26.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019672)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26071
rosa_chinensis RchiOBHm_Chr5g0069811
rosa_laevigata RLG00000036098
rosa_multiflora Rmu_co8283993.1_g000001 Rmu_sc0000726.1_g000002
rosa_samantha Rh5AG456900 Rh5DG487300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AccBSI CCGCTC 1 cut(s) 266
AccII CGCG 2 cut(s) 102, 593
AciI CCGC 4 cut(s) 102, 264, 449, 621
AclWI GGATC 1 cut(s) 653
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 71, 417
AgsI TTSAA 6 cut(s) 178, 307, 460, 503, 697, 720
AluBI AGCT 2 cut(s) 115, 538
AluI AGCT 2 cut(s) 115, 538
Alw21I GWGCWC 1 cut(s) 540
AlwI GGATC 1 cut(s) 653
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 39, 508
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AseI ATTAAT 1 cut(s) 714
AspLEI GCGC 1 cut(s) 102
AsuC2I CCSGG 1 cut(s) 544
AsuHPI GGTGA 2 cut(s) 289, 529
BanII GRGCYC 1 cut(s) 540
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 2 cut(s) 26, 520
BceAI ACGGC 1 cut(s) 338
BcgI CGANNNNNNTGC 8 cut(s) 232, 266, 385, 389, 419, 423, 469, 503
BciVI GTATCC 1 cut(s) 628
BcnI CCSGG 1 cut(s) 544
BfaI CTAG 2 cut(s) 344, 690
BfmI CTRYAG 1 cut(s) 649
BfuI GTATCC 1 cut(s) 628
BisI GCNGC 2 cut(s) 40, 509
BlsI GCNGC 2 cut(s) 41, 510
Bme1390I CCNGG 1 cut(s) 544
BmrFI CCNGG 1 cut(s) 544
BmsI GCATC 2 cut(s) 252, 405
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 588
Bpu10I CCTNAGC 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 544
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 417
Bse3DI GCAATG 2 cut(s) 141, 208
BseLI CCNNNNNNNGG 2 cut(s) 71, 417
BseMI GCAATG 2 cut(s) 141, 208
BseMII CTCAG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 26, 520
BsgI GTGCAG 1 cut(s) 473
Bsh1236I CGCG 2 cut(s) 102, 593
BshFI GGCC 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 1 cut(s) 544
BslI CCNNNNNNNGG 2 cut(s) 71, 417
BsnI GGCC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 2 cut(s) 214, 645
Bsp68I TCGCGA 1 cut(s) 593
BspACI CCGC 4 cut(s) 102, 264, 449, 621
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 324
BspFNI CGCG 2 cut(s) 102, 593
BspMAI CTGCAG 1 cut(s) 653
BspPI GGATC 1 cut(s) 653
BsrBI CCGCTC 1 cut(s) 266
BsrDI GCAATG 2 cut(s) 141, 208
BssMI GATC 2 cut(s) 214, 645
Bst4CI ACNGT 5 cut(s) 25, 56, 274, 496, 578
BstDEI CTNAG 2 cut(s) 224, 311
BstFNI CGCG 2 cut(s) 102, 593
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 2 cut(s) 217, 648
BstMBI GATC 2 cut(s) 214, 645
BstSCI CCNGG 1 cut(s) 542
BstSFI CTRYAG 1 cut(s) 649
BstUI CGCG 2 cut(s) 102, 593
BstV1I GCAGC 2 cut(s) 26, 520
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BsuI GTATCC 1 cut(s) 628
BsuRI GGCC 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 196
BtuMI TCGCGA 1 cut(s) 593
CfoI GCGC 1 cut(s) 102
CseI GACGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 230
CviAII CATG 2 cut(s) 71, 191
CviJI RGCY 6 cut(s) 5, 39, 115, 222, 538, 701
CviKI_1 RGCY 6 cut(s) 5, 39, 115, 222, 538, 701
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 2 cut(s) 224, 311
DpnI GATC 2 cut(s) 216, 647
DpnII GATC 2 cut(s) 214, 645
Ecl136II GAGCTC 1 cut(s) 538
Eco147I AGGCCT 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 540
Eco53kI GAGCTC 1 cut(s) 538
EcoICRI GAGCTC 1 cut(s) 538
EcoT22I ATGCAT 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 540
FaeI CATG 2 cut(s) 74, 194
FaiI YATR 9 cut(s) 72, 81, 192, 236, 241, 417, 440, 599, 704
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FatI CATG 2 cut(s) 70, 190
FauI CCCGC 3 cut(s) 95, 271, 456
Fnu4HI GCNGC 2 cut(s) 40, 509
FriOI GRGCYC 1 cut(s) 540
Fsp4HI GCNGC 2 cut(s) 40, 509
FspBI CTAG 2 cut(s) 344, 690
GlaI GCGC 1 cut(s) 101
GluI GCNGC 2 cut(s) 40, 509
GsuI CTGGAG 1 cut(s) 588
HaeIII GGCC 1 cut(s) 222
HapII CCGG 1 cut(s) 544
HgaI GACGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 102
Hin1II CATG 2 cut(s) 74, 194
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 2 cut(s) 178, 279
HpaII CCGG 1 cut(s) 544
HphI GGTGA 2 cut(s) 289, 529
Hpy166II GTNNAC 3 cut(s) 59, 574, 631
Hpy188I TCNGA 3 cut(s) 278, 529, 676
Hpy188III TCNNGA 3 cut(s) 60, 182, 592
Hpy8I GTNNAC 3 cut(s) 59, 574, 631
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 415, 419
HpyCH4III ACNGT 5 cut(s) 25, 56, 274, 496, 578
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 8 cut(s) 42, 134, 201, 243, 341, 490, 601, 651
HpyF3I CTNAG 2 cut(s) 224, 311
HpySE526I ACGT 1 cut(s) 637
Hsp92II CATG 2 cut(s) 74, 194
HspAI GCGC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 214, 645
LmnI GCTCC 3 cut(s) 97, 112, 271
LpnPI CCDG 3 cut(s) 195, 552, 557
Lsp1109I GCAGC 2 cut(s) 26, 520
LweI GCATC 2 cut(s) 252, 405
MaeI CTAG 2 cut(s) 344, 690
MaeII ACGT 1 cut(s) 637
MalI GATC 2 cut(s) 216, 647
MbiI CCGCTC 1 cut(s) 266
MboI GATC 2 cut(s) 214, 645
MboII GAAGA 4 cut(s) 170, 238, 241, 491
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 1 cut(s) 540
MluCI AATT 4 cut(s) 30, 302, 715, 720
MnlI CCTC 5 cut(s) 133, 270, 301, 462, 513
Mph1103I ATGCAT 1 cut(s) 245
MseI TTAA 4 cut(s) 144, 549, 714, 724
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 1 cut(s) 544
MspR9I CCNGG 1 cut(s) 544
MvnI CGCG 2 cut(s) 102, 593
NciI CCSGG 1 cut(s) 544
NdeII GATC 2 cut(s) 214, 645
NlaIII CATG 2 cut(s) 74, 194
NruI TCGCGA 1 cut(s) 593
NsiI ATGCAT 1 cut(s) 245
PceI AGGCCT 1 cut(s) 222
PfeI GAWTC 2 cut(s) 178, 279
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 2 cut(s) 41, 510
PshBI ATTAAT 1 cut(s) 714
Psp124BI GAGCTC 1 cut(s) 540
PstI CTGCAG 1 cut(s) 653
PsuI RGATCY 1 cut(s) 645
RruI TCGCGA 1 cut(s) 593
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 201
SacI GAGCTC 1 cut(s) 540
SaqAI TTAA 4 cut(s) 144, 549, 714, 724
SatI GCNGC 2 cut(s) 40, 509
Sau3AI GATC 2 cut(s) 214, 645
ScrFI CCNGG 1 cut(s) 544
SduI GDGCHC 1 cut(s) 540
SetI ASST 5 cut(s) 117, 339, 524, 540, 640
SfaNI GCATC 2 cut(s) 252, 405
SfcI CTRYAG 1 cut(s) 649
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 4 cut(s) 30, 302, 715, 720
SseBI AGGCCT 1 cut(s) 222
SsiI CCGC 4 cut(s) 102, 264, 449, 621
SspMI CTAG 2 cut(s) 344, 690
SstI GAGCTC 1 cut(s) 540
StuI AGGCCT 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 542
TaaI ACNGT 5 cut(s) 25, 56, 274, 496, 578
TaiI ACGT 1 cut(s) 640
TaqI TCGA 2 cut(s) 87, 399
TaqII GACCGA 1 cut(s) 24
TasI AATT 4 cut(s) 30, 302, 715, 720
TfiI GAWTC 2 cut(s) 178, 279
Tru1I TTAA 4 cut(s) 144, 549, 714, 724
Tru9I TTAA 4 cut(s) 144, 549, 714, 724
TscAI CASTG 1 cut(s) 203
TseI GCWGC 2 cut(s) 39, 508
TspRI CASTG 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 71
VspI ATTAAT 1 cut(s) 714
XspI CTAG 2 cut(s) 344, 690
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.