FvH4_2g32510

Helix-hairpin-helix DNA-binding motif class 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013438
Physical Location & Seq
Forward (+)
24627949 .. 24630103
2155 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32510.t1

Sequence Viewer

Length: 657 bp
ATGGAATTCGAGTGTTCAAATCTGAGTCTGTGGAAGGAAGCCCTCTCTTCCTATCAACCTCGCATAGAATCTCTCAACAAACCCAACTTGGTTTCTCTTGATGAGTTTTACCGCAACCAGCTACCGTCTCTCCTCCGCCGCCGGAACCCTAATCCCCACCTCACCACCTCCGAGCTCTCCGATCTCATGCGATGGAAGCTCACACGTGGCAAGTGGCGGCCGAGGTTGTTGGATTTCGTTTCGGCATTGGACGATTCGGTGGTGAAATCGGCCTCCGAGAAGGCGTTCCGGTCGCTTCCGGATTTGTCAAAGGCGGTGAATGAGCTCACCGTGCTCAAAGGCGTGGGTCCGGCCACAGCCTCGGCTGTTCTGGCAGCCTATGCGCCGGATGTGGCGCCTTTCATGTCCGACGAGGCTATGGAGGCGGGTCTTGGTAATAGCAAGGACTATTCACTCAAGCAGTATCTGTTGTTTGCGGATAAGTTACAGAAGAAAGCGAAGGAATTGAGTGCAGAAGGGGAAACCTTCACACTATCAGATGTAGAAAGGGCTTTATGGAGTTGTGCTGTAGGGGCTAAATTGCTATCTTCACAGTCAGATCCAGACCCCAAAGTTACTGATAAAACCAAAAACCCCAAGAAGAAGAGAAAACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.39

Weight (kDa)

9.32

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12210 AT3G12210
fragaria_vesca FvH4_2g32510
malus_domestica MD15G1064200.v1.1
prunus_persica Prupe.1G418200_v2.0.a1 Prupe.6G207800_v2.0.a1
pyrus_communis pycom15g06090
rosa_chinensis RchiOBHm_Chr6g0310141
rosa_laevigata RLG00000010505
rosa_multiflora Rmu_sc0000294.1_g000038 Rmu_sc0008163.1_g000003
rosa_roxburghii Rroxscaffold_7G00158820
rosa_rugosa Rorug06G0377700
rosa_samantha Rh6AG491800 Rh6BG501400 Rh6CG506500 Rh6DG492400
rosa_wichuraiana Rw6G042790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 394
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 7 cut(s) 112, 136, 139, 217, 314, 425, 476
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 2 cut(s) 218, 351
AcsI RAATTY 1 cut(s) 5
AcvI CACGTG 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 395
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 1 cut(s) 18
AluBI AGCT 4 cut(s) 121, 175, 199, 325
AluI AGCT 4 cut(s) 121, 175, 199, 325
Alw21I GWGCWC 3 cut(s) 177, 327, 336
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 593
AlwNI CAGNNNCTG 1 cut(s) 466
Aor13HI TCCGGA 1 cut(s) 298
AoxI GGCC 3 cut(s) 218, 270, 351
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 2 cut(s) 385, 397
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 4 cut(s) 154, 274, 319, 328
AvaII GGWCC 1 cut(s) 347
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 2 cut(s) 177, 327
BbrPI CACGTG 1 cut(s) 206
Bbv12I GWGCWC 3 cut(s) 177, 327, 336
BbvI GCAGC 1 cut(s) 386
BccI CCATC 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 567
BfoI RGCGCY 1 cut(s) 398
BisI GCNGC 3 cut(s) 139, 218, 375
BlsI GCNGC 3 cut(s) 140, 219, 376
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 3 cut(s) 146, 348, 396
BpuEI CTTGAG 1 cut(s) 440
BsaAI YACGTR 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 221, 360
BsaWI WCCGGW 2 cut(s) 288, 298
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
BseAI TCCGGA 1 cut(s) 298
BseDI CCNNGG 2 cut(s) 221, 360
BseGI GGATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 122
BseX3I CGGCCG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 531
Bsh1285I CGRYCG 2 cut(s) 221, 293
BshFI GGCC 3 cut(s) 220, 272, 353
BshNI GGYRCC 1 cut(s) 394
BsiEI CGRYCG 2 cut(s) 221, 293
BsiHKAI GWGCWC 3 cut(s) 177, 327, 336
BsiSI CCGG 5 cut(s) 142, 289, 299, 350, 386
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsnI GGCC 3 cut(s) 220, 272, 353
Bsp1286I GDGCHC 3 cut(s) 177, 327, 336
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 2 cut(s) 181, 598
BspACI CCGC 7 cut(s) 112, 136, 139, 217, 314, 425, 476
BspANI GGCC 3 cut(s) 220, 272, 353
BspCNI CTCAG 1 cut(s) 15
BspEI TCCGGA 1 cut(s) 298
BspLI GGNNCC 3 cut(s) 146, 348, 396
BspPI GGATC 1 cut(s) 593
BspT107I GGYRCC 1 cut(s) 394
BssECI CCNNGG 2 cut(s) 221, 360
BssMI GATC 2 cut(s) 181, 598
BssNI GRCGYC 1 cut(s) 395
Bst4CI ACNGT 3 cut(s) 126, 331, 594
Bst6I CTCTTC 2 cut(s) 52, 638
BstACI GRCGYC 1 cut(s) 395
BstAPI GCANNNNNTGC 1 cut(s) 380
BstBAI YACGTR 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 394
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 2 cut(s) 385, 397
BstKTI GATC 2 cut(s) 184, 601
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 181, 598
BstMCI CGRYCG 2 cut(s) 221, 293
BstMWI GCNNNNNNNGC 6 cut(s) 196, 331, 371, 380, 422, 572
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BstZI CGGCCG 1 cut(s) 218
BsuRI GGCC 3 cut(s) 220, 272, 353
BtgZI GCGATG 1 cut(s) 205
BtsCI GGATG 1 cut(s) 394
CaiI CAGNNNCTG 1 cut(s) 466
CfoI GCGC 2 cut(s) 385, 397
Cfr13I GGNCC 1 cut(s) 347
CviAII CATG 2 cut(s) 187, 403
DdeI CTNAG 1 cut(s) 23
DinI GGCGCC 1 cut(s) 396
DpnI GATC 2 cut(s) 183, 600
DpnII GATC 2 cut(s) 181, 598
EaeI YGGCCR 2 cut(s) 218, 351
EagI CGGCCG 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 52, 638
EarI CTCTTC 2 cut(s) 52, 638
EciI GGCGGA 1 cut(s) 125
Ecl136II GAGCTC 2 cut(s) 175, 325
EclXI CGGCCG 1 cut(s) 218
Eco24I GRGCYC 2 cut(s) 177, 327
Eco47I GGWCC 1 cut(s) 347
Eco52I CGGCCG 1 cut(s) 218
Eco53kI GAGCTC 2 cut(s) 175, 325
Eco72I CACGTG 1 cut(s) 206
EcoICRI GAGCTC 2 cut(s) 175, 325
EcoRI GAATTC 1 cut(s) 5
EcoT38I GRGCYC 2 cut(s) 177, 327
EgeI GGCGCC 1 cut(s) 396
EheI GGCGCC 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 2 cut(s) 190, 406
FaiI YATR 6 cut(s) 65, 188, 381, 404, 419, 556
FatI CATG 2 cut(s) 186, 402
FauI CCCGC 1 cut(s) 418
Fnu4HI GCNGC 3 cut(s) 139, 218, 375
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 2 cut(s) 177, 327
Fsp4HI GCNGC 3 cut(s) 139, 218, 375
GlaI GCGC 2 cut(s) 384, 396
GluI GCNGC 3 cut(s) 139, 218, 375
HaeII RGCGCY 1 cut(s) 398
HaeIII GGCC 3 cut(s) 220, 272, 353
HapII CCGG 5 cut(s) 142, 289, 299, 350, 386
HhaI GCGC 2 cut(s) 385, 397
Hin1I GRCGYC 1 cut(s) 395
Hin1II CATG 2 cut(s) 190, 406
Hin6I GCGC 2 cut(s) 383, 395
HinP1I GCGC 2 cut(s) 383, 395
HinfI GANTC 3 cut(s) 25, 68, 254
HpaII CCGG 5 cut(s) 142, 289, 299, 350, 386
HphI GGTGA 4 cut(s) 154, 274, 319, 328
Hpy188I TCNGA 7 cut(s) 24, 172, 181, 277, 409, 538, 598
Hpy188III TCNNGA 3 cut(s) 98, 299, 602
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 5 cut(s) 28, 274, 493, 509, 535
HpyCH4III ACNGT 3 cut(s) 126, 331, 594
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 512
HpyF10VI GCNNNNNNNGC 6 cut(s) 196, 331, 371, 380, 422, 572
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 205
Hsp92I GRCGYC 1 cut(s) 395
Hsp92II CATG 2 cut(s) 190, 406
HspAI GCGC 2 cut(s) 383, 395
KasI GGCGCC 1 cut(s) 394
Kpn2I TCCGGA 1 cut(s) 298
Kzo9I GATC 2 cut(s) 181, 598
LpnPI CCDG 8 cut(s) 131, 155, 302, 312, 356, 363, 399, 615
Lsp1109I GCAGC 1 cut(s) 386
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 2 cut(s) 483, 613
MalI GATC 2 cut(s) 183, 600
MboI GATC 2 cut(s) 181, 598
MboII GAAGA 5 cut(s) 39, 502, 579, 652, 655
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 3 cut(s) 177, 327, 336
MluCI AATT 3 cut(s) 5, 503, 578
Mly113I GGCGCC 1 cut(s) 395
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 210, 432
MroI TCCGGA 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 284
MspI CCGG 5 cut(s) 142, 289, 299, 350, 386
MwoI GCNNNNNNNGC 6 cut(s) 196, 331, 371, 380, 422, 572
NarI GGCGCC 1 cut(s) 395
NdeII GATC 2 cut(s) 181, 598
NlaIII CATG 2 cut(s) 190, 406
NlaIV GGNNCC 3 cut(s) 146, 348, 396
NmeAIII GCCGAG 2 cut(s) 246, 341
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 68, 254
PkrI GCNGC 3 cut(s) 140, 219, 376
PleI GAGTC 1 cut(s) 33
PluTI GGCGCC 1 cut(s) 398
PmaCI CACGTG 1 cut(s) 206
PmlI CACGTG 1 cut(s) 206
PpsI GAGTC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 206
Psp124BI GAGCTC 2 cut(s) 177, 327
PspCI CACGTG 1 cut(s) 206
PspN4I GGNNCC 3 cut(s) 146, 348, 396
PspPI GGNCC 1 cut(s) 347
PstNI CAGNNNCTG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 598
SacI GAGCTC 2 cut(s) 177, 327
SatI GCNGC 3 cut(s) 139, 218, 375
Sau3AI GATC 2 cut(s) 181, 598
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 34
SduI GDGCHC 3 cut(s) 177, 327, 336
SfcI CTRYAG 1 cut(s) 567
SfoI GGCGCC 1 cut(s) 396
SinI GGWCC 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 3 cut(s) 5, 503, 578
SsiI CCGC 7 cut(s) 112, 136, 139, 217, 314, 425, 476
SspDI GGCGCC 1 cut(s) 394
SstI GAGCTC 2 cut(s) 177, 327
TaaI ACNGT 3 cut(s) 126, 331, 594
TaiI ACGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 9
TasI AATT 3 cut(s) 5, 503, 578
TauI GCSGC 2 cut(s) 141, 220
TfiI GAWTC 2 cut(s) 68, 254
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.