Prupe.6G207800_v2.0.a1

Helix-hairpin-helix DNA-binding motif class 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013438
Physical Location & Seq
Forward (+)
21640536 .. 21643261
2726 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G207800.1

Sequence Viewer

Length: 831 bp
ATGGAATTTGAGTGCTCTGCTCCGAGTCTCTGGAGAGAGGCCCTATCTTCTTACTCGTCTCGCATCCAATCACTCAACAAACCCAATTTGGTTTCTCTCGACGACTTTTACCGCAACGCGCTCCCTTCTCTCCTCCACCAAGGAAACCCTAGCCCCTTCATCACCACCTCCGAGCTCTCTGACCTCATGCGTTGGAAGCTCACACGTGGCAAATGGCGGCCGAGGCTGTTGGATTTCGTATCGGCTTTGGACGAGGCCGTGGTGAAATCGGCCTCCCAAAAGGCGTTTCAGGCTCTTCCTGATATCTCAAAGGCTATCTCTGAGCTCACGGTGCTCAAAGGACTGGGTCCCGCCACCGCCTCTGCCGTTCTGGCAGCTTACGCTCCTGACGTGGCGCCCTTCATGTCCGACGAGGCTATGGTTGCAGCTCTTGGCAACTCCAAAGACTATACACTCAAGCAGTACCTGTTATTCGTAAATAAGTTACAGGAGAAAGCGAAGGAACTGACTGCCGAATGGGAGACCTTCACGCCATCAGATGTAGAGAGGGCTTTGTGGAGTGGTGCTGTAGGGGCCAAGCTGCCATCTTCGCAATCAGATCCAGACCTCAAAACTGATAAAACTTGTCTTGTGCAGCAGAGCTACTACGACGATTCCAGCACGCACCCAAAGCCGATGGATCTCTTAGCTTTTTGGTTCTTGGAGATTGGGGAAGAAGAGGAGCCTTCAATCAATCTCAAGTTGCTCTTCAGGTTCATGTTCATCAATCATGGAGCAGACAAACGCTTTCACGAGCACTATGTAAGCAGATCAGGACCAGAAGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

30.9

Weight (kDa)

5.35

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12210 AT3G12210
fragaria_vesca FvH4_2g32510
malus_domestica MD15G1064200.v1.1
prunus_persica Prupe.1G418200_v2.0.a1 Prupe.6G207800_v2.0.a1
pyrus_communis pycom15g06090
rosa_chinensis RchiOBHm_Chr6g0310141
rosa_laevigata RLG00000010505
rosa_multiflora Rmu_sc0000294.1_g000038 Rmu_sc0008163.1_g000003
rosa_roxburghii Rroxscaffold_7G00158820
rosa_rugosa Rorug06G0377700
rosa_samantha Rh6AG491800 Rh6BG501400 Rh6CG506500 Rh6DG492400
rosa_wichuraiana Rw6G042790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 394
AccII CGCG 1 cut(s) 119
AciI CCGC 4 cut(s) 112, 217, 351, 357
AclWI GGATC 2 cut(s) 593, 687
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 733
AcvI CACGTG 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 395
AfaI GTAC 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 1 cut(s) 729
AjiI CACGTC 1 cut(s) 391
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AloI GAACNNNNNNTCC 1 cut(s) 807
AluBI AGCT 8 cut(s) 175, 199, 325, 377, 428, 580, 642, 689
AluI AGCT 8 cut(s) 175, 199, 325, 377, 428, 580, 642, 689
Alw21I GWGCWC 5 cut(s) 17, 177, 327, 336, 798
Alw26I GTCTC 3 cut(s) 32, 63, 515
AlwI GGATC 2 cut(s) 593, 687
AlwNI CAGNNNCTG 1 cut(s) 466
AoxI GGCC 5 cut(s) 39, 218, 255, 270, 573
ApeKI GCWGC 4 cut(s) 374, 425, 580, 634
ApoI RAATTY 1 cut(s) 5
AspLEI GCGC 2 cut(s) 121, 397
AspS9I GGNCC 4 cut(s) 40, 347, 573, 815
AsuHPI GGTGA 2 cut(s) 154, 274
AvaII GGWCC 2 cut(s) 347, 815
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 2 cut(s) 177, 327
BauI CACGAG 1 cut(s) 791
BbrPI CACGTG 1 cut(s) 206
Bbv12I GWGCWC 5 cut(s) 17, 177, 327, 336, 798
BbvI GCAGC 4 cut(s) 386, 437, 567, 646
BccI CCATC 3 cut(s) 541, 592, 670
BceAI ACGGC 2 cut(s) 242, 350
BcoDI GTCTC 3 cut(s) 32, 63, 515
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 567
BfoI RGCGCY 1 cut(s) 398
BglI GCCNNNNNGGC 1 cut(s) 371
BisI GCNGC 5 cut(s) 218, 375, 426, 581, 635
BlsI GCNGC 5 cut(s) 219, 376, 427, 582, 636
Bme18I GGWCC 2 cut(s) 347, 815
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 4 cut(s) 40, 347, 573, 815
BmiI GGNNCC 5 cut(s) 348, 349, 396, 574, 723
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 52
BpuEI CTTGAG 2 cut(s) 440, 722
BsaAI YACGTR 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 395
BsaI GGTCTC 1 cut(s) 515
BsaJI CCNNGG 3 cut(s) 139, 221, 258
Bse1I ACTGG 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 139, 221, 258
BseGI GGATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 2 cut(s) 122, 734
BseX3I CGGCCG 1 cut(s) 218
BseXI GCAGC 4 cut(s) 386, 437, 567, 646
BsgI GTGCAG 1 cut(s) 653
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 5 cut(s) 41, 220, 257, 272, 575
BshNI GGYRCC 1 cut(s) 394
BsiEI CGRYCG 1 cut(s) 221
BsiHKAI GWGCWC 5 cut(s) 17, 177, 327, 336, 798
BslFI GGGAC 1 cut(s) 333
BsmAI GTCTC 3 cut(s) 32, 63, 515
BsmBI CGTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 5 cut(s) 41, 220, 257, 272, 575
Bso31I GGTCTC 1 cut(s) 515
Bsp1286I GDGCHC 5 cut(s) 17, 177, 327, 336, 798
Bsp143I GATC 3 cut(s) 598, 679, 809
BspACI CCGC 4 cut(s) 112, 217, 351, 357
BspANI GGCC 5 cut(s) 41, 220, 257, 272, 575
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 5 cut(s) 348, 349, 396, 574, 723
BspPI GGATC 2 cut(s) 593, 687
BspQI GCTCTTC 2 cut(s) 300, 752
BspT107I GGYRCC 1 cut(s) 394
BspTNI GGTCTC 1 cut(s) 515
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 3 cut(s) 139, 221, 258
BssMI GATC 3 cut(s) 598, 679, 809
BssNI GRCGYC 1 cut(s) 395
BssSI CACGAG 1 cut(s) 791
BssT1I CCWWGG 1 cut(s) 139
Bst2BI CACGAG 1 cut(s) 791
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 3 cut(s) 300, 711, 752
BstACI GRCGYC 1 cut(s) 395
BstBAI YACGTR 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 662
BstDEI CTNAG 2 cut(s) 321, 685
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 2 cut(s) 121, 397
BstKTI GATC 3 cut(s) 601, 682, 812
BstMAI GTCTC 3 cut(s) 32, 63, 515
BstMBI GATC 3 cut(s) 598, 679, 809
BstMCI CGRYCG 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 567
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 4 cut(s) 386, 437, 567, 646
BstX2I RGATCY 2 cut(s) 598, 679
BstYI RGATCY 2 cut(s) 598, 679
BstZI CGGCCG 1 cut(s) 218
BsuRI GGCC 5 cut(s) 41, 220, 257, 272, 575
BtgI CCRYGG 1 cut(s) 258
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 662
CaiI CAGNNNCTG 1 cut(s) 466
CfoI GCGC 2 cut(s) 121, 397
Cfr13I GGNCC 4 cut(s) 40, 347, 573, 815
Csp6I GTAC 1 cut(s) 463
CviAII CATG 4 cut(s) 187, 403, 757, 770
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 321, 685
DinI GGCGCC 1 cut(s) 396
DpnI GATC 3 cut(s) 600, 681, 811
DpnII GATC 3 cut(s) 598, 679, 809
EaeI YGGCCR 1 cut(s) 218
EagI CGGCCG 1 cut(s) 218
Eam1104I CTCTTC 3 cut(s) 300, 711, 752
EarI CTCTTC 3 cut(s) 300, 711, 752
Ecl136II GAGCTC 2 cut(s) 175, 325
EclXI CGGCCG 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 2 cut(s) 177, 327
Eco31I GGTCTC 1 cut(s) 515
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 2 cut(s) 347, 815
Eco52I CGGCCG 1 cut(s) 218
Eco53kI GAGCTC 2 cut(s) 175, 325
Eco57I CTGAAG 1 cut(s) 733
Eco72I CACGTG 1 cut(s) 206
EcoICRI GAGCTC 2 cut(s) 175, 325
EcoO109I RGGNCCY 2 cut(s) 40, 347
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 2 cut(s) 177, 327
EgeI GGCGCC 1 cut(s) 396
EheI GGCGCC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 4 cut(s) 190, 406, 760, 773
FaiI YATR 7 cut(s) 188, 404, 419, 450, 758, 771, 801
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FaqI GGGAC 1 cut(s) 333
FatI CATG 4 cut(s) 186, 402, 756, 769
FauI CCCGC 1 cut(s) 358
Fnu4HI GCNGC 5 cut(s) 218, 375, 426, 581, 635
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 2 cut(s) 177, 327
Fsp4HI GCNGC 5 cut(s) 218, 375, 426, 581, 635
FspBI CTAG 1 cut(s) 150
GlaI GCGC 2 cut(s) 120, 396
GluI GCNGC 5 cut(s) 218, 375, 426, 581, 635
GsuI CTGGAG 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 398
HaeIII GGCC 5 cut(s) 41, 220, 257, 272, 575
HhaI GCGC 2 cut(s) 121, 397
Hin1I GRCGYC 1 cut(s) 395
Hin1II CATG 4 cut(s) 190, 406, 760, 773
Hin6I GCGC 2 cut(s) 119, 395
HinP1I GCGC 2 cut(s) 119, 395
HinfI GANTC 2 cut(s) 25, 653
HphI GGTGA 2 cut(s) 154, 274
Hpy188I TCNGA 7 cut(s) 24, 172, 181, 322, 409, 538, 598
Hpy188III TCNNGA 7 cut(s) 31, 98, 299, 386, 602, 791, 813
Hpy99I CGWCG 3 cut(s) 104, 413, 653
HpyAV CCTTC 6 cut(s) 135, 166, 409, 493, 535, 735
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 2 cut(s) 205, 390
HpyCH4V TGCA 2 cut(s) 425, 634
HpyF3I CTNAG 2 cut(s) 321, 685
HpySE526I ACGT 2 cut(s) 205, 390
Hsp92I GRCGYC 1 cut(s) 395
Hsp92II CATG 4 cut(s) 190, 406, 760, 773
HspAI GCGC 2 cut(s) 119, 395
KasI GGCGCC 1 cut(s) 394
KflI GGGWCCC 1 cut(s) 347
Kzo9I GATC 3 cut(s) 598, 679, 809
LguI GCTCTTC 2 cut(s) 300, 752
LmnI GCTCC 5 cut(s) 25, 126, 388, 721, 773
Lsp1109I GCAGC 4 cut(s) 386, 437, 567, 646
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 150
MaeII ACGT 2 cut(s) 205, 390
MaeIII GTNAC 1 cut(s) 483
MalI GATC 3 cut(s) 600, 681, 811
MboI GATC 3 cut(s) 598, 679, 809
MboII GAAGA 6 cut(s) 39, 287, 579, 725, 728, 739
MflI RGATCY 2 cut(s) 598, 679
MhlI GDGCHC 5 cut(s) 17, 177, 327, 336, 798
MluCI AATT 2 cut(s) 5, 85
Mly113I GGCGCC 1 cut(s) 395
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 3 cut(s) 173, 210, 432
MvnI CGCG 1 cut(s) 119
NarI GGCGCC 1 cut(s) 395
NdeII GATC 3 cut(s) 598, 679, 809
NlaIII CATG 4 cut(s) 190, 406, 760, 773
NlaIV GGNNCC 5 cut(s) 348, 349, 396, 574, 723
NmeAIII GCCGAG 1 cut(s) 246
PciSI GCTCTTC 2 cut(s) 300, 752
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PfeI GAWTC 1 cut(s) 653
PflFI GACNNNGTC 1 cut(s) 345
PkrI GCNGC 5 cut(s) 219, 376, 427, 582, 636
PleI GAGTC 1 cut(s) 33
PluTI GGCGCC 1 cut(s) 398
PmaCI CACGTG 1 cut(s) 206
PmlI CACGTG 1 cut(s) 206
PpsI GAGTC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 206
PpuMI RGGWCCY 1 cut(s) 347
Psp124BI GAGCTC 2 cut(s) 177, 327
Psp5II RGGWCCY 1 cut(s) 347
PspCI CACGTG 1 cut(s) 206
PspN4I GGNNCC 5 cut(s) 348, 349, 396, 574, 723
PspPI GGNCC 4 cut(s) 40, 347, 573, 815
PspPPI RGGWCCY 1 cut(s) 347
PstNI CAGNNNCTG 1 cut(s) 466
PsuI RGATCY 2 cut(s) 598, 679
PsyI GACNNNGTC 1 cut(s) 345
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SacI GAGCTC 2 cut(s) 177, 327
SapI GCTCTTC 2 cut(s) 300, 752
SatI GCNGC 5 cut(s) 218, 375, 426, 581, 635
Sau3AI GATC 3 cut(s) 598, 679, 809
Sau96I GGNCC 4 cut(s) 40, 347, 573, 815
SchI GAGTC 1 cut(s) 34
SduI GDGCHC 5 cut(s) 17, 177, 327, 336, 798
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 567
SfoI GGCGCC 1 cut(s) 396
SinI GGWCC 2 cut(s) 347, 815
SmlI CTYRAG 2 cut(s) 455, 737
SmoI CTYRAG 2 cut(s) 455, 737
Sse9I AATT 2 cut(s) 5, 85
SsiI CCGC 4 cut(s) 112, 217, 351, 357
SspDI GGCGCC 1 cut(s) 394
SspMI CTAG 1 cut(s) 150
SstI GAGCTC 2 cut(s) 177, 327
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 2 cut(s) 208, 393
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 5, 85
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 1 cut(s) 653
TseI GCWGC 4 cut(s) 374, 425, 580, 634
TspDTI ATGAA 4 cut(s) 148, 391, 745, 751
Tth111I GACNNNGTC 1 cut(s) 345
VpaK11BI GGWCC 2 cut(s) 347, 815
XapI RAATTY 1 cut(s) 5
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.