FvH4_2g36640

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016773
Physical Location & Seq
Reverse (-)
26781330 .. 26783530
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36640.t1

Sequence Viewer

Length: 1458 bp
ATGGCATCACCACCGTTAGAGCCTCATGTTGTGATTTTTCCCTTCATGGCTCATGGCCACACTCTTCCATTACTAGACCTCTCCAAAGCTCTTTCCCACCGGAGAATCAAAGTGACCATCTTCACAACTCCTTCAAATGCTAAATCCATTTCCAACAAGGTTGGATGTCACCCAAATATAATCATCAACACAATCCCTTTCCCCACAGATATCGATTCCCTCGGGCTACCTCGAGGAATTGAAAACACATCCCAACTCCCATCTATGGAATTTTGGTTACCTTTCGTCCTCGCCACCAAGCAACTCCAAAAGCCCTTCGAACAAGTCCTACAATCCATGCACGATTCCAAAACCCTTCCCATCTGCGTGATCTCGGATTTCTTCTTTGGCTGGACACTCGAATCCTGCCGAAAATTCGGAGTTCCCAGGTTGGTATTTCATGGCATGGGAGTCTTGTCAATGGCGATTTGCAAAAGTGTGATCGTTCATAGGCCATACTTGAAAGCAAAGTCGGTTTCAGACCCTTTAGACTTTCCCGGCCTTAAGCTTCCCTTTCTTTTGAATACTTCAGAATTACCAGAGACGCTTCTTCAAATAGGTGATGCAAATGACCCATTTGCTCAGTTCATGTTTGAGGTGGGCGAAGCAGACATCAATAGCTGGGGGGTCATTGTTAATAGCTTCGAGGAGCTAGAGAGTGGTAGTGTTTCATCTGTGGAATCATTCTATGAGAACGGCGCTAAAGCTTGGTGTTTAGGACCTCTTAACTTTTATGACAAAGTCGAAGGTGGAGTTGCTAACATCAACCGGGAAAAACAAAGCCTCGTGTTAACAGAGTGGCTTAACGAGCAAGTGACTCCGGGCTCTGTGATCTATATCGCATTTGGAACACAGGCTGATATGTCAGAGGCTCAACTTGATGAAGTGGTTTTTGGCTTAGAGGAGGCTGGCGTTCCATTTGTCTTTGTGGTGCGATCGACCAAATGGTCTCCACCAAATCGACTTAAAGAGAGGTTAAAAGGTAAGGGCTTGATCGCGAGGGAGTGGGTGGATCAACGCCAAATACTAGCACACCGAGCAGTAGGAGGTTTCCTGAGCCATTGTGGTTGGAACTCGGTGATCGAAAGCATCTCTGCCGGGGTGCCCATTTTGGCGTGGCCGATGATCGCAGAGCAGTCTCTGAATGCCAAGCTTGTTGCTGAAGGACTCGGGGCAGGACTTGCAATAAAAAAGGTGAAAGATCACTCGAGGTTGGGGTTTGAAGTCTCAAGGCAAGCAATACGTGACGGAGTTAGAGAGCTGATGTTGGGAGGAGAGAAGGGTAGGAATGCAAAGGAGAGAGCACAGGCCCTCGGAAGAGTAGCTTGGCTTGCTGTTCAAGAAGGTGGTTCTTCCTATCAAGCCCTAGATAAGCTTATAGACCAACTAAGGGTATCTTCAATTCTGCCCAGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

486

Amino Acids

53.41

Weight (kDa)

6.44

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 277 - 408 1.5e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36640
malus_domestica MD15G1106200.v1.1
prunus_persica Prupe.1G458200_v2.0.a1 Prupe.1G458400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0305151 RchiOBHm_Chr6g0305161
rosa_laevigata RLG00000010913
rosa_multiflora Rmu_sc0000061.1_g000018
rosa_roxburghii Rroxscaffold_7G00163100
rosa_rugosa Rorug06G0338300
rosa_samantha Rh6AG449800 Rh6CG463200 Rh6DG450400
rosa_wichuraiana Rw6G039170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 985
AbsI CCTCGAGG 1 cut(s) 231
AccB1I GGYRCC 1 cut(s) 1141
AccII CGCG 1 cut(s) 1037
AclWI GGATC 1 cut(s) 1059
AcoI YGGCCR 2 cut(s) 55, 1157
AcsI RAATTY 2 cut(s) 269, 413
AcuI CTGAAG 2 cut(s) 552, 1221
AfiI CCNNNNNNNGG 2 cut(s) 265, 1429
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 8 cut(s) 135, 242, 502, 562, 593, 1262, 1379, 1440
AjnI CCWGG 1 cut(s) 425
AjuI GAANNNNNNNTTGG 4 cut(s) 915, 947, 1348, 1380
Alw21I GWGCWC 1 cut(s) 1345
Alw26I GTCTC 4 cut(s) 575, 993, 1182, 1270
AlwI GGATC 1 cut(s) 1059
AlwNI CAGNNNCTG 1 cut(s) 1180
Ama87I CYCGRG 4 cut(s) 221, 231, 1208, 1246
AoxI GGCC 5 cut(s) 55, 491, 538, 1157, 1347
ApoI RAATTY 2 cut(s) 269, 413
AspLEI GCGC 1 cut(s) 740
AspS9I GGNCC 2 cut(s) 758, 1348
AsuC2I CCSGG 4 cut(s) 537, 809, 861, 1138
AsuHPI GGTGA 4 cut(s) 161, 611, 1129, 1246
AsuII TTCGAA 1 cut(s) 318
AvaI CYCGRG 4 cut(s) 221, 231, 1208, 1246
AvaII GGWCC 1 cut(s) 758
BaeGI GKGCMC 1 cut(s) 1146
BalI TGGCCA 1 cut(s) 57
BanI GGYRCC 1 cut(s) 1141
BanII GRGCYC 1 cut(s) 866
BauI CACGAG 1 cut(s) 824
Bbv12I GWGCWC 1 cut(s) 1345
BccI CCATC 3 cut(s) 125, 268, 368
BceAI ACGGC 1 cut(s) 751
BciT130I CCWGG 1 cut(s) 427
BcnI CCSGG 4 cut(s) 537, 809, 861, 1138
BcoDI GTCTC 4 cut(s) 575, 993, 1182, 1270
BfaI CTAG 4 cut(s) 74, 692, 1067, 1406
BfoI RGCGCY 1 cut(s) 741
BfrI CTTAAG 1 cut(s) 542
Bme1390I CCNGG 5 cut(s) 427, 537, 809, 861, 1138
Bme18I GGWCC 1 cut(s) 758
BmeT110I CYCGRG 4 cut(s) 221, 231, 1208, 1246
BmgT120I GGNCC 2 cut(s) 758, 1348
BmiI GGNNCC 1 cut(s) 1143
BmrFI CCNGG 5 cut(s) 427, 537, 809, 861, 1138
BmrI ACTGGG 1 cut(s) 1443
BmsI GCATC 3 cut(s) 14, 592, 1137
BmuI ACTGGG 1 cut(s) 1443
Bpu10I CCTNAGC 1 cut(s) 1094
Bpu14I TTCGAA 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 1252
BpuMI CCSGG 4 cut(s) 537, 809, 861, 1138
Bsa29I ATCGAT 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 1283
BsaBI GATNNNNATC 1 cut(s) 875
BsaI GGTCTC 1 cut(s) 993
BsaJI CCNNGG 4 cut(s) 220, 425, 1137, 1351
BsaWI WCCGGW 1 cut(s) 99
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 1429
Bse1I ACTGG 1 cut(s) 1449
Bse8I GATNNNNATC 1 cut(s) 875
BseBI CCWGG 1 cut(s) 427
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 4 cut(s) 220, 425, 1137, 1351
BseGI GGATG 2 cut(s) 170, 248
BseJI GATNNNNATC 1 cut(s) 875
BseLI CCNNNNNNNGG 2 cut(s) 265, 1429
BseMII CTCAG 2 cut(s) 635, 1085
BseNI ACTGG 1 cut(s) 1449
BseRI GAGGAG 3 cut(s) 701, 956, 1326
BseSI GKGCMC 1 cut(s) 1146
BseYI CCCAGC 1 cut(s) 660
Bsh1236I CGCG 1 cut(s) 1037
Bsh1285I CGRYCG 1 cut(s) 977
BshFI GGCC 5 cut(s) 57, 493, 540, 1159, 1349
BshNI GGYRCC 1 cut(s) 1141
BshVI ATCGAT 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 977
BsiHKAI GWGCWC 1 cut(s) 1345
BsiHKCI CYCGRG 4 cut(s) 221, 231, 1208, 1246
BsiSI CCGG 5 cut(s) 100, 537, 808, 860, 1137
BslI CCNNNNNNNGG 2 cut(s) 265, 1429
BsmAI GTCTC 4 cut(s) 575, 993, 1182, 1270
BsmBI CGTCTC 1 cut(s) 575
BsmI GAATGC 2 cut(s) 1189, 1333
BsnI GGCC 5 cut(s) 57, 493, 540, 1159, 1349
Bso31I GGTCTC 1 cut(s) 993
BsoBI CYCGRG 4 cut(s) 221, 231, 1208, 1246
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 3 cut(s) 866, 1146, 1345
Bsp143I GATC 9 cut(s) 369, 480, 870, 974, 1032, 1051, 1119, 1164, 1240
Bsp68I TCGCGA 1 cut(s) 1037
BspANI GGCC 5 cut(s) 57, 493, 540, 1159, 1349
BspCNI CTCAG 2 cut(s) 634, 1086
BspDI ATCGAT 1 cut(s) 213
BspFNI CGCG 1 cut(s) 1037
BspLI GGNNCC 1 cut(s) 1143
BspPI GGATC 1 cut(s) 1059
BspT104I TTCGAA 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 1141
BspTI CTTAAG 1 cut(s) 542
BspTNI GGTCTC 1 cut(s) 993
BsrI ACTGG 1 cut(s) 1449
BssECI CCNNGG 4 cut(s) 220, 425, 1137, 1351
BssMI GATC 9 cut(s) 369, 480, 870, 974, 1032, 1051, 1119, 1164, 1240
BssSI CACGAG 1 cut(s) 824
Bst2BI CACGAG 1 cut(s) 824
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 2 cut(s) 69, 1351
BstAFI CTTAAG 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 1220
BstBAI YACGTR 1 cut(s) 1283
BstBI TTCGAA 1 cut(s) 318
BstC8I GCNNGC 3 cut(s) 949, 1275, 1371
BstDEI CTNAG 4 cut(s) 621, 937, 1094, 1427
BstEII GGTNACC 1 cut(s) 276
BstF5I GGATG 2 cut(s) 170, 248
BstFNI CGCG 1 cut(s) 1037
BstH2I RGCGCY 1 cut(s) 741
BstHHI GCGC 1 cut(s) 740
BstKTI GATC 9 cut(s) 372, 483, 873, 977, 1035, 1054, 1122, 1167, 1243
BstMAI GTCTC 4 cut(s) 575, 993, 1182, 1270
BstMBI GATC 9 cut(s) 369, 480, 870, 974, 1032, 1051, 1119, 1164, 1240
BstMCI CGRYCG 1 cut(s) 977
BstMWI GCNNNNNNNGC 4 cut(s) 847, 1076, 1220, 1370
BstNI CCWGG 1 cut(s) 427
BstPI GGTNACC 1 cut(s) 276
BstSCI CCNGG 5 cut(s) 425, 535, 807, 859, 1136
BstSLI GKGCMC 1 cut(s) 1146
BstUI CGCG 1 cut(s) 1037
Bsu15I ATCGAT 1 cut(s) 213
BsuRI GGCC 5 cut(s) 57, 493, 540, 1159, 1349
BsuTUI ATCGAT 1 cut(s) 213
BtsCI GGATG 2 cut(s) 170, 248
BtuMI TCGCGA 1 cut(s) 1037
Cac8I GCNNGC 3 cut(s) 949, 1275, 1371
CaiI CAGNNNCTG 1 cut(s) 1180
CfoI GCGC 1 cut(s) 740
Cfr13I GGNCC 2 cut(s) 758, 1348
ClaI ATCGAT 1 cut(s) 213
CseI GACGC 1 cut(s) 592
CviAII CATG 7 cut(s) 26, 46, 53, 337, 440, 445, 628
DdeI CTNAG 4 cut(s) 621, 937, 1094, 1427
DpnI GATC 9 cut(s) 371, 482, 872, 976, 1034, 1053, 1121, 1166, 1242
DpnII GATC 9 cut(s) 369, 480, 870, 974, 1032, 1051, 1119, 1164, 1240
DrdI GACNNNNNNGTC 1 cut(s) 985
DseDI GACNNNNNNGTC 1 cut(s) 985
EaeI YGGCCR 2 cut(s) 55, 1157
Eam1104I CTCTTC 2 cut(s) 69, 1351
EarI CTCTTC 2 cut(s) 69, 1351
Eco24I GRGCYC 1 cut(s) 866
Eco31I GGTCTC 1 cut(s) 993
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 758
Eco57I CTGAAG 2 cut(s) 552, 1221
Eco88I CYCGRG 4 cut(s) 221, 231, 1208, 1246
Eco91I GGTNACC 1 cut(s) 276
EcoO109I RGGNCCY 2 cut(s) 758, 1348
EcoO65I GGTNACC 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 425
EcoRV GATATC 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 866
Esp3I CGTCTC 1 cut(s) 575
FaeI CATG 7 cut(s) 29, 49, 56, 340, 443, 448, 631
FalI AAGNNNNNCTT 6 cut(s) 536, 568, 1348, 1380, 1420, 1452
FatI CATG 7 cut(s) 25, 45, 52, 336, 439, 444, 627
FokI GGATG 2 cut(s) 177, 235
FriOI GRGCYC 1 cut(s) 866
FspBI CTAG 4 cut(s) 74, 692, 1067, 1406
GlaI GCGC 1 cut(s) 739
GsaI CCCAGC 1 cut(s) 664
HaeII RGCGCY 1 cut(s) 741
HaeIII GGCC 5 cut(s) 57, 493, 540, 1159, 1349
HapII CCGG 5 cut(s) 100, 537, 808, 860, 1137
HgaI GACGC 1 cut(s) 592
HhaI GCGC 1 cut(s) 740
Hin1II CATG 7 cut(s) 29, 49, 56, 340, 443, 448, 631
Hin6I GCGC 1 cut(s) 738
HinP1I GCGC 1 cut(s) 738
HincII GTYRAC 1 cut(s) 831
HindII GTYRAC 1 cut(s) 831
HindIII AAGCTT 4 cut(s) 545, 744, 1190, 1412
HinfI GANTC 8 cut(s) 105, 215, 344, 401, 450, 719, 856, 1206
HpaI GTTAAC 1 cut(s) 831
HpaII CCGG 5 cut(s) 100, 537, 808, 860, 1137
HphI GGTGA 4 cut(s) 161, 611, 1129, 1246
Hpy166II GTNNAC 1 cut(s) 831
Hpy188I TCNGA 7 cut(s) 376, 419, 520, 571, 907, 1182, 1355
Hpy188III TCNNGA 3 cut(s) 1036, 1093, 1379
Hpy8I GTNNAC 1 cut(s) 831
HpyAV CCTTC 8 cut(s) 52, 141, 325, 365, 779, 1196, 1312, 1376
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 1282
HpyCH4V TGCA 5 cut(s) 340, 471, 605, 1223, 1331
HpyF10VI GCNNNNNNNGC 4 cut(s) 847, 1076, 1220, 1370
HpyF3I CTNAG 4 cut(s) 621, 937, 1094, 1427
HpySE526I ACGT 1 cut(s) 1282
Hsp92II CATG 7 cut(s) 29, 49, 56, 340, 443, 448, 631
HspAI GCGC 1 cut(s) 738
KspAI GTTAAC 1 cut(s) 831
Kzo9I GATC 9 cut(s) 369, 480, 870, 974, 1032, 1051, 1119, 1164, 1240
LmnI GCTCC 1 cut(s) 688
LweI GCATC 3 cut(s) 14, 592, 1137
MaeI CTAG 4 cut(s) 74, 692, 1067, 1406
MaeII ACGT 1 cut(s) 1282
MaeIII GTNAC 5 cut(s) 112, 167, 276, 853, 1283
MalI GATC 9 cut(s) 371, 482, 872, 976, 1034, 1053, 1121, 1166, 1242
MboI GATC 9 cut(s) 369, 480, 870, 974, 1032, 1051, 1119, 1164, 1240
MboII GAAGA 7 cut(s) 56, 112, 373, 581, 1368, 1383, 1428
MhlI GDGCHC 3 cut(s) 866, 1146, 1345
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 6 cut(s) 237, 269, 413, 572, 1440, 1453
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 3 cut(s) 459, 850, 1200
MmeI TCCRAC 3 cut(s) 142, 177, 1088
Mox20I TGGCCA 1 cut(s) 57
MscI TGGCCA 1 cut(s) 57
MseI TTAA 8 cut(s) 543, 675, 765, 830, 843, 1005, 1016, 1456
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 1 cut(s) 57
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 5 cut(s) 100, 537, 808, 860, 1137
MspR9I CCNGG 5 cut(s) 427, 537, 809, 861, 1138
Mva1269I GAATGC 2 cut(s) 1189, 1333
MvaI CCWGG 1 cut(s) 427
MvnI CGCG 1 cut(s) 1037
MwoI GCNNNNNNNGC 4 cut(s) 847, 1076, 1220, 1370
NciI CCSGG 4 cut(s) 537, 809, 861, 1138
NdeII GATC 9 cut(s) 369, 480, 870, 974, 1032, 1051, 1119, 1164, 1240
NlaIII CATG 7 cut(s) 29, 49, 56, 340, 443, 448, 631
NlaIV GGNNCC 1 cut(s) 1143
NmuCI GTSAC 4 cut(s) 112, 167, 853, 1283
NruI TCGCGA 1 cut(s) 1037
NspV TTCGAA 1 cut(s) 318
PaeR7I CTCGAG 2 cut(s) 231, 1246
PctI GAATGC 2 cut(s) 1189, 1333
PfeI GAWTC 5 cut(s) 105, 215, 344, 401, 719
PflFI GACNNNGTC 1 cut(s) 779
Ple19I CGATCG 1 cut(s) 977
PleI GAGTC 3 cut(s) 458, 850, 1200
PpsI GAGTC 3 cut(s) 458, 850, 1200
Ppu21I YACGTR 1 cut(s) 1283
PpuMI RGGWCCY 1 cut(s) 758
Psp5II RGGWCCY 1 cut(s) 758
Psp6I CCWGG 1 cut(s) 425
PspEI GGTNACC 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 660
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 1143
PspPI GGNCC 2 cut(s) 758, 1348
PspPPI RGGWCCY 1 cut(s) 758
PspXI VCTCGAGB 2 cut(s) 231, 1246
PsrI GAACNNNNNNTAC 2 cut(s) 312, 344
PstNI CAGNNNCTG 1 cut(s) 1180
PsyI GACNNNGTC 1 cut(s) 779
PvuI CGATCG 1 cut(s) 977
RruI TCGCGA 1 cut(s) 1037
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 8 cut(s) 543, 675, 765, 830, 843, 1005, 1016, 1456
Sau3AI GATC 9 cut(s) 369, 480, 870, 974, 1032, 1051, 1119, 1164, 1240
Sau96I GGNCC 2 cut(s) 758, 1348
SchI GAGTC 3 cut(s) 459, 850, 1200
ScrFI CCNGG 5 cut(s) 427, 537, 809, 861, 1138
SduI GDGCHC 3 cut(s) 866, 1146, 1345
SfaNI GCATC 3 cut(s) 14, 592, 1137
Sfr274I CTCGAG 2 cut(s) 231, 1246
SfuI TTCGAA 1 cut(s) 318
SinI GGWCC 1 cut(s) 758
SlaI CTCGAG 2 cut(s) 231, 1246
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 4 cut(s) 231, 542, 1246, 1267
SmoI CTYRAG 4 cut(s) 231, 542, 1246, 1267
Sse9I AATT 6 cut(s) 237, 269, 413, 572, 1440, 1453
SspMI CTAG 4 cut(s) 74, 692, 1067, 1406
StyD4I CCNGG 5 cut(s) 425, 535, 807, 859, 1136
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 1 cut(s) 1285
TasI AATT 6 cut(s) 237, 269, 413, 572, 1440, 1453
TfiI GAWTC 5 cut(s) 105, 215, 344, 401, 719
Tru1I TTAA 8 cut(s) 543, 675, 765, 830, 843, 1005, 1016, 1456
Tru9I TTAA 8 cut(s) 543, 675, 765, 830, 843, 1005, 1016, 1456
TseFI GTSAC 4 cut(s) 112, 167, 853, 1283
Tsp45I GTSAC 4 cut(s) 112, 167, 853, 1283
TspDTI ATGAA 6 cut(s) 34, 428, 476, 616, 699, 936
TspGWI ACGGA 1 cut(s) 1302
Tth111I GACNNNGTC 1 cut(s) 779
Vha464I CTTAAG 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 758
XapI RAATTY 2 cut(s) 269, 413
XhoI CTCGAG 2 cut(s) 231, 1246
XspI CTAG 4 cut(s) 74, 692, 1067, 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.