Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002188

Physical Location & Seq

Genomic Coordinates Reverse (-)

49020375 .. 49027947

Gene Structure 7573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0338300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2874 bp

ATGTTTGGTAGAATGAAACCGGTTAAAGAAGAGCCGTCGTCATGCAATGCTTCACAAGCCATTGACTTAGTTTCAGCGGTGAAGGAGTTACATGGGCTTAACTCTCAGGAACTGGGTAAATTATTGAGGGACTCTGAAAATTTTACCATAAACTATGGTACTGAAAAGGAATCAAGTCTAAAGATTGACGTTGAAAGGCTTGCCAGTTCTCTCCCTCTGCACCTTATTGCAGTGCTTATATCATCTGACAAAGATGAAGCCCTATTCAGATACTTAACATGTGGCGTCAGGCTCTTGCACTCCTTGTGTGATTTAGCACCTCGAAATGCCAAACTTGAACAGATTTTGCTCGATGATGTAAAAGTGTCAGAACAGCTGCTTGACCTGGTGTTCTATATCCTCATTATTTTGGGTGGTTATGAACAGAAAAATAACAATTTCAGTATGGCACTGCTGATGCATTCTGCACTAGTGGCCTGCAGTTTACATCTACTTACTGGATGTATATCTTCACAGTGGCAAGATCTGGTTCAAGTATTGCTTGCACATCCTAAGGTTGACATATTTATGGAGGCAGCTTTTGGAGCAGTTCATGTTTCCATCAAGTTTCTCAACCTCAAGCTTTCATCTCAACATACCGATTTCTATACGAAATCAAATTTGACTAGTGAACAAATAGTTCATTCTCTCTGCCAGCAATGTGAGGCCTCTTTACAGTTTCTCCAATTGCTGTGCCAGCAAAAATTGTTTCGGGAACGACTACTCAGGAATAAGGAACTATGTGGAAAAGGTGGTGTTCTCTTTCTGGCTCAAGCCATCTTGAAGCTAAACATTGCGCCTCATTTTGTAGCATCTGCTAGAATAGTGGCTGCTGTATCTAGGCTGAAAGCAAAAATACTCTCAATTCTGTTGAATCTTTGTGAAGCAGAAAGCATATCTTACCTGGACGAAGTTGCCAGCTCCCCAGGCAGCCTGGATTTGGCAAAGTCTGTTGCATTGGAGATTATTGAGTTATTGAAGTGTGCTCTGGGTAAAGATCCCAGATGTTTTGCTGCTTGTTCTGATGGAAGTTATCCGATGGGGCTTGCCCAACTCAATGCCATGCGCCTAGCTGATATCTTATCTGATGATTCAAACTTTCGATCTTACATTACAATACATTTTACAAAAGTGCTGACTGCAATATTTTCGCTCCCTCATGGAGATTTTTTATCCAGTTGGTGTTCATCTGTACTCCCTGTAAAGGAAGAAGATGGCACTATTGAGTATGATTCCTTTGCAACAGCTGGATGGGTTTTGGATGTAGTTTCATCTATTGAACTGCATAATGCACGAAGTTTAGAATTTTCTGTAACTCGCAACAGTATGACCCAGGCTTCTTATGCACATCAGAGAACATCATTATTTGTGAAAATAATTGCAAACCTCCATTGTTTCATTCCCACTATCTGTGAAGAACAGGAGAGGAACCTTTTTGCTAACAAGTTTATGGAGTGCTTGCAAATGGATCCATCTAACTCATTGCCTGGAATTTCCTTTGATTCTGATACTCTGAAAGCGGCAACTATCAGCAGAAATCTTTGTTCATTGCTAAGTCATGCCGAATCTCTAATTCCAAACTTTTTGAATGAGGAGGATGTACAGCTCCTGAGGGTTTTCTCTAAGCAATTTGAATCACTACTCACTCCAATGGAGGAGAAGAAATGTGAGGAGTTAAAATATTGGGATAAATTTGCTAAACTCAACATCAGCGAACATCATCAGGAGGTTACTGGAGGATGCTCACCACTACCTTCAATAAGACAACTACCTCTTAGTTTTAGTAGAAGAAGTGGTAACTTGGAGGAAATAAAGTCCGAGAATTCTGCTTTTCAAGATGTGGACCAAGTTGATGTGAACAGTGAGCATATGGATCAGAAGGATGATGCAATGACGGAAGACAAAGGTACATCTGCTAGAAGTGCATCTGGACGATTTACACCAATCAACAGAGATATTCATAATGTTGAAACAAGTGGTTCAGACACAAGCGAAACAAGAGGTAAAAATGCTGTTGATCCAATGGGAAACAGTGAATTTCCAAAGTCAAGTGAACCCATAGAAGAAAGTGGATATGGAGGAACTCGAGAGGATGAAAAGAGTGAACCTCTTCAGTATGAAGAAACGCAGAGAAGAAAACGGAAACGAACAATAATGAATGATGAACAGGTGGCGCTTGTGGAGAAAGCCCTAATAGATGAACCTGATATGCAGCGCAATGCAGCATCACTACAATCATGGGCTGATAAATTAAGTTCTCATGGTTCCGATGTGACATCTTCACAGCTAAAAAATTGGCTGAACAATCGAAAAGCCAGGCTGGCCCGTACAAAGGATGTTCGTGCAGTACCAGAGTTCAATGCACTACCAGATAAGCAAGGTGTGCAAGGACTGAGGTCCAACAACTCAGCCGAGAGCCCTATTGGAAATGCTTCTGCACAACTAAATGTGAGGAGTGATCCTCAAATGAAGCTGAATAGTAGTGTAGTCCAGATCTCTGGGACAAAAGCAGCAGAAGCTATTGCCCGTGGTCCTTCAGAATTTGTTCCATGCAAGCAAGGTGACTGTGTTTTGCTTAAATATAATAACGGAGAGGAGGTTGGCATAGGAAAGGTGTTTCAGGCAAGTGGCCAATGGTTTGGGAGGAACTTGGAGGAGTTGAGGGCATATGTTGTGGATATCAAAGAGCTTAAAGTTAGAAGAGCAATGAAGCTTCCATACCCATCTATGGCCACAGGTGGTTCATTTGAGGAGGCTGAAACAAAGATTGGCTTAATGAGAGTGTTATGGGATTCAAGCAAGACTTTCAAATTGCCTCCTCTAAGGTTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

957

Amino Acids

106.36

Weight (kDa)

5.78

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin_N	PF25246	19 - 536	9.2e-262	Nodulin N-terminal domain
HTH_NDX	PF24426	732 - 792	5.5e-35	NDX Homeobox-like domain
Nodulin_C	PF24679	862 - 947	1.7e-35	Nodulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53500 AT3G14790 AT3G14790
fragaria_vesca	FvH4_2g36650 FvH4_2g36650 FvH4_6g38080 FvH4_6g38080 FvH4_6g38080 FvH4_6g38080 FvH4_6g38080
malus_domestica	MD09G1154300.v1.1 MD09G1154700.v1.1 MD15G1106300.v1.1 MD17G1140800.v1.1
prunus_persica	Prupe.1G458500_v2.0.a1 Prupe.3G170800_v2.0.a1
pyrus_communis	pycom09g07360 pycom15g09690 pycom17g13400
rosa_chinensis	RchiOBHm_Chr2g0151131 RchiOBHm_Chr6g0305141
rosa_laevigata	RLG00000010914 RLG00000020533
rosa_multiflora	Rmu_sc0000061.1_g000019 Rmu_sc0032179.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096710 Rroxscaffold_7G00163120
rosa_rugosa	Rorug02G0425000 Rorug02G0425100 Rorug06G0338000 Rorug06G0338100 Rorug06G0338200 Rorug06G0338300
rosa_samantha	Rh2AG485600 Rh2BG497500 Rh2CG471400 Rh2DG508500 Rh6AG449700 Rh6BG451700 Rh6CG463100 Rh6DG450100
rosa_wichuraiana	Rw2G039770 Rw6G039160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	77, 1559
AclWI	GGATC	6 cut(s)	1031, 1502, 1515, 1920, 2051, 2492
AcoI	YGGCCR	2 cut(s)	2668, 2769
AcsI	RAATTY	8 cut(s)	139, 658, 1343, 1530, 1730, 1861, 2075, 2579
AcuI	CTGAAG	2 cut(s)	2135, 2559
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	6 cut(s)	160, 1233, 1641, 1948, 2368, 2388
AfiI	CCNNNNNNNGG	4 cut(s)	979, 1243, 2371, 2767
AflIII	ACRYGT	1 cut(s)	278
AgeI	ACCGGT	1 cut(s)	19
AhlI	ACTAGT	2 cut(s)	469, 665
AjnI	CCWGG	7 cut(s)	384, 942, 964, 972, 1371, 1525, 2354
AjuI	GAANNNNNNNTTGG	2 cut(s)	2790, 2822
Alw21I	GWGCWC	1 cut(s)	1027
AlwI	GGATC	6 cut(s)	1031, 1502, 1515, 1920, 2051, 2492
AlwNI	CAGNNNCTG	2 cut(s)	112, 1648
Ama87I	CYCGRG	1 cut(s)	2124
AoxI	GGCC	5 cut(s)	474, 705, 2361, 2668, 2769
ApeKI	GCWGC	8 cut(s)	376, 575, 869, 969, 1052, 2251, 2261, 2549
ApoI	RAATTY	8 cut(s)	139, 658, 1343, 1530, 1730, 1861, 2075, 2579
AsiGI	ACCGGT	1 cut(s)	19
Asp700I	GAANNNNTTC	3 cut(s)	2148, 2470, 2583
AspLEI	GCGC	4 cut(s)	838, 1107, 2215, 2256
AspS9I	GGNCC	4 cut(s)	1882, 2362, 2436, 2570
AsuHPI	GGTGA	3 cut(s)	91, 1776, 2612
AvaI	CYCGRG	1 cut(s)	2124
AvaII	GGWCC	3 cut(s)	1882, 2436, 2570
AxyI	CCTNAGG	2 cut(s)	552, 1649
BalI	TGGCCA	2 cut(s)	2670, 2771
BamHI	GGATCC	1 cut(s)	1507
BanII	GRGCYC	1 cut(s)	2459
BarI	GAAGNNNNNNTAC	2 cut(s)	2741, 2773
BbsI	GAAGAC	1 cut(s)	1944
Bbv12I	GWGCWC	1 cut(s)	1027
BbvI	GCAGC	8 cut(s)	363, 587, 856, 981, 1039, 2263, 2273, 2561
BccI	CCATC	8 cut(s)	608, 824, 1058, 1072, 1247, 1284, 1519, 2770
BceAI	ACGGC	1 cut(s)	19
BcgI	CGANNNNNNTGC	4 cut(s)	1170, 1204, 1847, 1881
BciT130I	CCWGG	7 cut(s)	386, 944, 966, 974, 1373, 1527, 2356
BcuI	ACTAGT	2 cut(s)	469, 665
BfaI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	2216
BglI	GCCNNNNNGGC	1 cut(s)	2360
BglII	AGATCT	2 cut(s)	523, 2532
BisI	GCNGC	9 cut(s)	377, 576, 870, 970, 1053, 1560, 2252, 2262, 2550
BlsI	GCNGC	9 cut(s)	378, 577, 871, 971, 1054, 1561, 2253, 2263, 2551
Bme1390I	CCNGG	7 cut(s)	386, 944, 966, 974, 1373, 1527, 2356
Bme18I	GGWCC	3 cut(s)	1882, 2436, 2570
BmeT110I	CYCGRG	1 cut(s)	2124
BmgT120I	GGNCC	4 cut(s)	1882, 2362, 2436, 2570
BmiI	GGNNCC	3 cut(s)	1469, 1509, 2305
BmrFI	CCNGG	7 cut(s)	386, 944, 966, 974, 1373, 1527, 2356
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	6 cut(s)	447, 860, 1769, 1915, 1973, 2273
BmuI	ACTGGG	1 cut(s)	122
BoxI	GACNNNNGTC	1 cut(s)	2434
BpiI	GAAGAC	1 cut(s)	1944
BplI	GAGNNNNNCTC	4 cut(s)	2131, 2163, 2485, 2517
BpmI	CTGGAG	1 cut(s)	1794
BpuEI	CTTGAG	2 cut(s)	602, 795
BsaBI	GATNNNNATC	1 cut(s)	505
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	964, 1371, 2566
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	4 cut(s)	705, 735, 2622, 2652
Bsc4I	CCNNNNNNNGG	4 cut(s)	979, 1243, 2371, 2767
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	5 cut(s)	117, 204, 502, 1215, 1777
Bse21I	CCTNAGG	2 cut(s)	552, 1649
Bse3DI	GCAATG	8 cut(s)	52, 704, 831, 1520, 1586, 1935, 2263, 2751
Bse8I	GATNNNNATC	1 cut(s)	505
BseBI	CCWGG	7 cut(s)	386, 944, 966, 974, 1373, 1527, 2356
BseDI	CCNNGG	3 cut(s)	964, 1371, 2566
BseGI	GGATG	9 cut(s)	506, 547, 1295, 1306, 1642, 1784, 1927, 2137, 2380
BseJI	GATNNNNATC	1 cut(s)	505
BseLI	CCNNNNNNNGG	4 cut(s)	979, 1243, 2371, 2767
BseMI	GCAATG	8 cut(s)	52, 704, 831, 1520, 1586, 1935, 2263, 2751
BseMII	CTCAG	5 cut(s)	119, 778, 1640, 2423, 2460
BseNI	ACTGG	5 cut(s)	117, 204, 502, 1215, 1777
BseRI	GAGGAG	8 cut(s)	1646, 1709, 1724, 2506, 2648, 2708, 2804, 2847
BseXI	GCAGC	8 cut(s)	363, 587, 856, 981, 1039, 2263, 2273, 2561
BsgI	GTGCAG	4 cut(s)	203, 450, 2403, 2460
BshFI	GGCC	5 cut(s)	476, 707, 2363, 2670, 2771
BshTI	ACCGGT	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	1027
BsiHKCI	CYCGRG	1 cut(s)	2124
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	143, 2554
BslI	CCNNNNNNNGG	4 cut(s)	979, 1243, 2371, 2767
BsmFI	GGGAC	2 cut(s)	143, 2554
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	5 cut(s)	476, 707, 2363, 2670, 2771
BsoBI	CYCGRG	1 cut(s)	2124
Bsp1286I	GDGCHC	2 cut(s)	1027, 2459
Bsp1407I	TGTACA	1 cut(s)	1639
Bsp143I	GATC	8 cut(s)	523, 1036, 1142, 1507, 1912, 2056, 2497, 2532
BspACI	CCGC	2 cut(s)	77, 1559
BspANI	GGCC	5 cut(s)	476, 707, 2363, 2670, 2771
BspCNI	CTCAG	5 cut(s)	118, 777, 1641, 2424, 2459
BspLI	GGNNCC	3 cut(s)	1469, 1509, 2305
BspMAI	CTGCAG	1 cut(s)	482
BspPI	GGATC	6 cut(s)	1031, 1502, 1515, 1920, 2051, 2492
BspQI	GCTCTTC	2 cut(s)	24, 2734
BsrDI	GCAATG	8 cut(s)	52, 704, 831, 1520, 1586, 1935, 2263, 2751
BsrFI	RCCGGY	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	1639
BsrI	ACTGG	5 cut(s)	117, 204, 502, 1215, 1777
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	964, 1371, 2566
BssMI	GATC	8 cut(s)	523, 1036, 1142, 1507, 1912, 2056, 2497, 2532
BssNI	GRCGYC	1 cut(s)	285
Bst2UI	CCWGG	7 cut(s)	386, 944, 966, 974, 1373, 1527, 2356
Bst4CI	ACNGT	6 cut(s)	516, 717, 1364, 1901, 2072, 2606
Bst6I	CTCTTC	3 cut(s)	24, 2154, 2734
BstACI	GRCGYC	1 cut(s)	285
BstAPI	GCANNNNNTGC	1 cut(s)	2422
BstAUI	TGTACA	1 cut(s)	1639
BstDSI	CCRYGG	1 cut(s)	2566
BstF5I	GGATG	9 cut(s)	506, 547, 1295, 1306, 1642, 1784, 1927, 2137, 2380
BstH2I	RGCGCY	1 cut(s)	2216
BstHHI	GCGC	4 cut(s)	838, 1107, 2215, 2256
BstKTI	GATC	8 cut(s)	526, 1039, 1145, 1510, 1915, 2059, 2500, 2535
BstMBI	GATC	8 cut(s)	523, 1036, 1142, 1507, 1912, 2056, 2497, 2532
BstNI	CCWGG	7 cut(s)	386, 944, 966, 974, 1373, 1527, 2356
BstNSI	RCATGY	1 cut(s)	282
BstPAI	GACNNNNGTC	1 cut(s)	2434
BstSCI	CCNGG	7 cut(s)	384, 942, 964, 972, 1371, 1525, 2354
BstSFI	CTRYAG	1 cut(s)	478
BstV1I	GCAGC	8 cut(s)	363, 587, 856, 981, 1039, 2263, 2273, 2561
BstV2I	GAAGAC	1 cut(s)	1944
BstX2I	RGATCY	4 cut(s)	523, 1036, 1507, 2532
BstXI	CCANNNNNNTGG	2 cut(s)	2537, 2678
BstYI	RGATCY	4 cut(s)	523, 1036, 1507, 2532
Bsu36I	CCTNAGG	2 cut(s)	552, 1649
BsuRI	GGCC	5 cut(s)	476, 707, 2363, 2670, 2771
BtgI	CCRYGG	1 cut(s)	2566
BtsCI	GGATG	9 cut(s)	506, 547, 1295, 1306, 1642, 1784, 1927, 2137, 2380
BtsI	GCAGTG	2 cut(s)	237, 449
BtsIMutI	CAGTG	5 cut(s)	237, 449, 521, 1906, 2077
CaiI	CAGNNNCTG	2 cut(s)	112, 1648
CfoI	GCGC	4 cut(s)	838, 1107, 2215, 2256
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	4 cut(s)	1882, 2362, 2436, 2570
CseI	GACGC	1 cut(s)	274
CsiI	ACCWGGT	1 cut(s)	384
Csp6I	GTAC	6 cut(s)	159, 1232, 1640, 1947, 2367, 2387
CspAI	ACCGGT	1 cut(s)	19
CviQI	GTAC	6 cut(s)	159, 1232, 1640, 1947, 2367, 2387
DpnI	GATC	8 cut(s)	525, 1038, 1144, 1509, 1914, 2058, 2499, 2534
DpnII	GATC	8 cut(s)	523, 1036, 1142, 1507, 1912, 2056, 2497, 2532
EaeI	YGGCCR	2 cut(s)	2668, 2769
Eam1104I	CTCTTC	3 cut(s)	24, 2154, 2734
EarI	CTCTTC	3 cut(s)	24, 2154, 2734
Eco147I	AGGCCT	1 cut(s)	707
Eco24I	GRGCYC	1 cut(s)	2459
Eco32I	GATATC	2 cut(s)	1117, 2719
Eco47I	GGWCC	3 cut(s)	1882, 2436, 2570
Eco57I	CTGAAG	2 cut(s)	2135, 2559
Eco81I	CCTNAGG	2 cut(s)	552, 1649
Eco88I	CYCGRG	1 cut(s)	2124
EcoRI	GAATTC	1 cut(s)	1861
EcoRII	CCWGG	7 cut(s)	384, 942, 964, 972, 1371, 1525, 2354
EcoRV	GATATC	2 cut(s)	1117, 2719
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	2459
FalI	AAGNNNNNCTT	8 cut(s)	525, 557, 922, 954, 2795, 2827, 2827, 2859
FaqI	GGGAC	2 cut(s)	143, 2554
FauNDI	CATATG	2 cut(s)	1908, 2707
Fnu4HI	GCNGC	9 cut(s)	377, 576, 870, 970, 1053, 1560, 2252, 2262, 2550
FokI	GGATG	9 cut(s)	513, 534, 1302, 1313, 1649, 1791, 1934, 2144, 2387
FriOI	GRGCYC	1 cut(s)	2459
Fsp4HI	GCNGC	9 cut(s)	377, 576, 870, 970, 1053, 1560, 2252, 2262, 2550
FspBI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
GlaI	GCGC	4 cut(s)	837, 1106, 2214, 2255
GluI	GCNGC	9 cut(s)	377, 576, 870, 970, 1053, 1560, 2252, 2262, 2550
GsuI	CTGGAG	1 cut(s)	1794
HaeII	RGCGCY	1 cut(s)	2216
HaeIII	GGCC	5 cut(s)	476, 707, 2363, 2670, 2771
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	4 cut(s)	838, 1107, 2215, 2256
Hin1I	GRCGYC	1 cut(s)	285
Hin6I	GCGC	4 cut(s)	836, 1105, 2213, 2254
HinP1I	GCGC	4 cut(s)	836, 1105, 2213, 2254
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	2 cut(s)	620, 2750
HinfI	GANTC	9 cut(s)	131, 170, 913, 1130, 1271, 1541, 1604, 1673, 2831
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	3 cut(s)	91, 1776, 2612
Hpy166II	GTNNAC	7 cut(s)	485, 559, 671, 1882, 1897, 2093, 2144
Hpy8I	GTNNAC	7 cut(s)	485, 559, 671, 1882, 1897, 2093, 2144
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	4 cut(s)	76, 1803, 1912, 2583
HpyCH4III	ACNGT	6 cut(s)	516, 717, 1364, 1901, 2072, 2606
HpyCH4IV	ACGT	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	285
HspAI	GCGC	4 cut(s)	836, 1105, 2213, 2254
Kzo9I	GATC	8 cut(s)	523, 1036, 1142, 1507, 1912, 2056, 2497, 2532
LguI	GCTCTTC	2 cut(s)	24, 2734
LmnI	GCTCC	4 cut(s)	584, 965, 1197, 1650
Lsp1109I	GCAGC	8 cut(s)	363, 587, 856, 981, 1039, 2263, 2273, 2561
LweI	GCATC	6 cut(s)	447, 860, 1769, 1915, 1973, 2273
MabI	ACCWGGT	1 cut(s)	384
MaeI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	6 cut(s)	87, 1351, 1768, 1835, 2311, 2600
MalI	GATC	8 cut(s)	525, 1038, 1144, 1509, 1914, 2058, 2499, 2534
MboI	GATC	8 cut(s)	523, 1036, 1142, 1507, 1912, 2056, 2497, 2532
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	4 cut(s)	523, 1036, 1507, 2532
MhlI	GDGCHC	2 cut(s)	1027, 2459
MlsI	TGGCCA	2 cut(s)	2670, 2771
MluNI	TGGCCA	2 cut(s)	2670, 2771
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	2463
Mox20I	TGGCCA	2 cut(s)	2670, 2771
Mph1103I	ATGCAT	1 cut(s)	462
MroXI	GAANNNNTTC	3 cut(s)	2148, 2470, 2583
MscI	TGGCCA	2 cut(s)	2670, 2771
MslI	CAYNNNNRTG	2 cut(s)	566, 1688
Msp20I	TGGCCA	2 cut(s)	2670, 2771
MspA1I	CMGCKG	3 cut(s)	77, 376, 1286
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	7 cut(s)	386, 944, 966, 974, 1373, 1527, 2356
MunI	CAATTG	1 cut(s)	725
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	7 cut(s)	386, 944, 966, 974, 1373, 1527, 2356
NdeI	CATATG	2 cut(s)	1908, 2707
NdeII	GATC	8 cut(s)	523, 1036, 1142, 1507, 1912, 2056, 2497, 2532
NlaIV	GGNNCC	3 cut(s)	1469, 1509, 2305
NmeAIII	GCCGAG	1 cut(s)	2476
NmuCI	GTSAC	2 cut(s)	2311, 2600
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	1 cut(s)	282
PaeR7I	CTCGAG	1 cut(s)	2124
PceI	AGGCCT	1 cut(s)	707
PciI	ACATGT	1 cut(s)	278
PciSI	GCTCTTC	2 cut(s)	24, 2734
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	3 cut(s)	2148, 2470, 2583
PfeI	GAWTC	8 cut(s)	170, 913, 1130, 1271, 1541, 1604, 1673, 2831
PinAI	ACCGGT	1 cut(s)	19
PkrI	GCNGC	9 cut(s)	378, 577, 871, 971, 1054, 1561, 2253, 2263, 2551
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PscI	ACATGT	1 cut(s)	278
PshAI	GACNNNNGTC	1 cut(s)	2434
Psp6I	CCWGG	7 cut(s)	384, 942, 964, 972, 1371, 1525, 2354
PspGI	CCWGG	7 cut(s)	384, 942, 964, 972, 1371, 1525, 2354
PspN4I	GGNNCC	3 cut(s)	1469, 1509, 2305
PspPI	GGNCC	4 cut(s)	1882, 2362, 2436, 2570
PstI	CTGCAG	1 cut(s)	482
PstNI	CAGNNNCTG	2 cut(s)	112, 1648
PsuI	RGATCY	4 cut(s)	523, 1036, 1507, 2532
PvuII	CAGCTG	2 cut(s)	376, 1286
RsaI	GTAC	6 cut(s)	160, 1233, 1641, 1948, 2368, 2388
RsaNI	GTAC	6 cut(s)	159, 1232, 1640, 1947, 2367, 2387
RseI	CAYNNNNRTG	2 cut(s)	566, 1688
SapI	GCTCTTC	2 cut(s)	24, 2734
SatI	GCNGC	9 cut(s)	377, 576, 870, 970, 1053, 1560, 2252, 2262, 2550
Sau3AI	GATC	8 cut(s)	523, 1036, 1142, 1507, 1912, 2056, 2497, 2532
Sau96I	GGNCC	4 cut(s)	1882, 2362, 2436, 2570
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	7 cut(s)	386, 944, 966, 974, 1373, 1527, 2356
SduI	GDGCHC	2 cut(s)	1027, 2459
SexAI	ACCWGGT	1 cut(s)	384
SfaNI	GCATC	6 cut(s)	447, 860, 1769, 1915, 1973, 2273
SfcI	CTRYAG	1 cut(s)	478
Sfr274I	CTCGAG	1 cut(s)	2124
SinI	GGWCC	3 cut(s)	1882, 2436, 2570
SlaI	CTCGAG	1 cut(s)	2124
SmiMI	CAYNNNNRTG	2 cut(s)	566, 1688
SmlI	CTYRAG	3 cut(s)	617, 810, 2124
SmoI	CTYRAG	3 cut(s)	617, 810, 2124
SpeI	ACTAGT	2 cut(s)	469, 665
SseBI	AGGCCT	1 cut(s)	707
SsiI	CCGC	2 cut(s)	77, 1559
SspI	AATATT	2 cut(s)	1185, 1721
SspMI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
StuI	AGGCCT	1 cut(s)	707
StyD4I	CCNGG	7 cut(s)	384, 942, 964, 972, 1371, 1525, 2354
TaaI	ACNGT	6 cut(s)	516, 717, 1364, 1901, 2072, 2606
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	322, 351, 1141, 2125, 2347
TatI	WGTACW	2 cut(s)	1231, 1639
TauI	GCSGC	1 cut(s)	1562
TfiI	GAWTC	8 cut(s)	170, 913, 1130, 1271, 1541, 1604, 1673, 2831
TscAI	CASTG	5 cut(s)	237, 456, 521, 1906, 2077
TseFI	GTSAC	2 cut(s)	2311, 2600
TseI	GCWGC	8 cut(s)	376, 575, 869, 969, 1052, 2251, 2261, 2549
Tsp45I	GTSAC	2 cut(s)	2311, 2600
TspGWI	ACGGA	3 cut(s)	1949, 2194, 2643
TspRI	CASTG	5 cut(s)	237, 456, 521, 1906, 2077
VpaK11BI	GGWCC	3 cut(s)	1882, 2436, 2570
XapI	RAATTY	8 cut(s)	139, 658, 1343, 1530, 1730, 1861, 2075, 2579
XceI	RCATGY	1 cut(s)	282
XhoI	CTCGAG	1 cut(s)	2124
XmnI	GAANNNNTTC	3 cut(s)	2148, 2470, 2583
XspI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.