Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002188

Physical Location & Seq

Genomic Coordinates Reverse (-)

54617056 .. 54617454

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0425000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGTTCACCAACCTCGGAAAATGTCTATGTTTCGCTTTGATCCTCGTGATGTTTGGGGCTTGGTCTTCTGAAGCCACTTCTTGCACACTCCAAGATGCATCAATGTATGGGAGATACGAGCAATGGATGGCTCGTTATGGACGTGTCTATGAAGTGATCAACGAGAAGGAGAAGTGCTTCCTAATATTTAAGGAGAATGTAGCATTTGTAGAATCATCCAACAATGATGCAAGCAAACCTTACAAATTAAGTGTCAATCAATTTGCAGACCTTACAAATGAAGAATTCATTGCCTTGAGAAATCGATTCAAGGGTCATGAATGTTCCAGAAAGACCACTTCTTTCAAGTATGAAAAAGTTACTGTGCCAGCTACTGTAGACTGGAGACAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009812 GO:0009813 GO:0009914 GO:0009966 GO:0009987 GO:0010253 GO:0010280 GO:0010315 GO:0010646 GO:0010817 GO:0010928 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0023051 GO:0030054 GO:0030154 GO:0032502 GO:0033478 GO:0034641 GO:0034654 GO:0042127 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0048583 GO:0048869 GO:0050377 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055044 GO:0055086 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

132

Amino Acids

15.38

Weight (kDa)

8.25

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 97	2.3e-17	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53500 AT3G14790 AT3G14790
fragaria_vesca	FvH4_2g36650 FvH4_2g36650 FvH4_6g38080 FvH4_6g38080 FvH4_6g38080 FvH4_6g38080 FvH4_6g38080
malus_domestica	MD09G1154300.v1.1 MD09G1154700.v1.1 MD15G1106300.v1.1 MD17G1140800.v1.1
prunus_persica	Prupe.1G458500_v2.0.a1 Prupe.3G170800_v2.0.a1
pyrus_communis	pycom09g07360 pycom15g09690 pycom17g13400
rosa_chinensis	RchiOBHm_Chr2g0151131 RchiOBHm_Chr6g0305141
rosa_laevigata	RLG00000010914 RLG00000020533
rosa_multiflora	Rmu_sc0000061.1_g000019 Rmu_sc0032179.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096710 Rroxscaffold_7G00163120
rosa_rugosa	Rorug02G0425000 Rorug02G0425100 Rorug06G0338000 Rorug06G0338100 Rorug06G0338200 Rorug06G0338300
rosa_samantha	Rh2AG485600 Rh2BG497500 Rh2CG471400 Rh2DG508500 Rh6AG449700 Rh6BG451700 Rh6CG463100 Rh6DG450100
rosa_wichuraiana	Rw2G039770 Rw6G039160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	93
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	313, 349
AjiI	CACGTC	1 cut(s)	146
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
Asp700I	GAANNNNTTC	1 cut(s)	179
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	60
BccI	CCATC	1 cut(s)	124
BclI	TGATCA	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	382
BfmI	CTRYAG	1 cut(s)	378
BmgBI	CACGTC	1 cut(s)	146
BmsI	GCATC	3 cut(s)	88, 110, 220
BpiI	GAAGAC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	319
Bsa29I	ATCGAT	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	389
Bse3DI	GCAATG	2 cut(s)	131, 291
BseCI	ATCGAT	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	2 cut(s)	135, 218
BseMI	GCAATG	2 cut(s)	131, 291
BseNI	ACTGG	1 cut(s)	389
BshVI	ATCGAT	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	42, 159
BspDI	ATCGAT	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	319
BspPI	GGATC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	131, 291
BsrI	ACTGG	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	42, 159
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	367, 379
BstC8I	GCNNGC	2 cut(s)	235, 372
BstF5I	GGATG	2 cut(s)	135, 218
BstKTI	GATC	2 cut(s)	45, 162
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	2 cut(s)	42, 159
BstSFI	CTRYAG	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	60
Bsu15I	ATCGAT	1 cut(s)	307
BsuTUI	ATCGAT	1 cut(s)	307
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	135, 218
Cac8I	GCNNGC	2 cut(s)	235, 372
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	1 cut(s)	319
ClaI	ATCGAT	1 cut(s)	307
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	4 cut(s)	62, 77, 134, 374
CviKI_1	RGCY	4 cut(s)	62, 77, 134, 374
DpnI	GATC	2 cut(s)	44, 161
DpnII	GATC	2 cut(s)	42, 159
Eco57I	CTGAAG	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	103
FaeI	CATG	1 cut(s)	323
FaiI	YATR	6 cut(s)	31, 111, 141, 153, 321, 354
FalI	AAGNNNNNCTT	2 cut(s)	226, 258
FatI	CATG	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	381
FokI	GGATG	2 cut(s)	142, 205
Hin1II	CATG	1 cut(s)	323
HinfI	GANTC	2 cut(s)	215, 309
Hpy166II	GTNNAC	2 cut(s)	9, 382
Hpy188I	TCNGA	2 cut(s)	20, 73
Hpy188III	TCNNGA	3 cut(s)	49, 320, 330
Hpy8I	GTNNAC	2 cut(s)	9, 382
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	2 cut(s)	367, 379
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	87, 101, 233, 269
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	42, 159
LpnPI	CCDG	3 cut(s)	343, 370, 384
LweI	GCATC	3 cut(s)	88, 110, 220
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	44, 161
MboI	GATC	2 cut(s)	42, 159
MboII	GAAGA	2 cut(s)	60, 296
MluCI	AATT	3 cut(s)	248, 263, 287
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	2 cut(s)	26, 56
Mph1103I	ATGCAT	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	2 cut(s)	192, 251
NdeII	GATC	2 cut(s)	42, 159
NlaIII	CATG	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	103
PagI	TCATGA	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	215, 309
PstNI	CAGNNNCTG	1 cut(s)	377
SaqAI	TTAA	2 cut(s)	192, 251
Sau3AI	GATC	2 cut(s)	42, 159
SetI	ASST	5 cut(s)	18, 148, 244, 276, 376
SfaNI	GCATC	3 cut(s)	88, 110, 220
SfcI	CTRYAG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	3 cut(s)	248, 263, 287
SspI	AATATT	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	367, 379
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	307
TasI	AATT	3 cut(s)	248, 263, 287
TfiI	GAWTC	2 cut(s)	215, 309
Tru1I	TTAA	2 cut(s)	192, 251
Tru9I	TTAA	2 cut(s)	192, 251
TspDTI	ATGAA	5 cut(s)	168, 280, 297, 336, 369
XapI	RAATTY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.