Rorug06G0338200

rhamnose biosynthetic enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002188
Physical Location & Seq
Reverse (-)
49007617 .. 49009016
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0338200.1

Sequence Viewer

Length: 387 bp
ATGGGCGCTTCTGTGGATCTTTTCTTCATAAAGGAACTTCCGTTGAGAGGCTTCGATGATGAAATGAGGGTAGTTGTTGCAAGGAATCTGGAAGGTAGGGGAATTAATTTACACCCAAGAACAAATCTGACAGAGTTGATAAAAACAGATGATGTTATCACAGATCGTGGTGAAGAGCTGATAGCGGATGTTGTATTGTTCACCACTGGTCGGGTTCCTAATACAAAGAGGTTGAATTTGGAAGTTGTAGGTGTTGTGGGACTTGGTGAAGAACAGGCAGTAGAACAAGCCAACAGTGATTTATTAGTTTTCACATCAACCTTCAATCCAATGATGAACACTGTATCTAGACGGCAAGAAAAGTCGGTTGTGAAGCTTTGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 map00520
Pfam Domains
Protein Families
Epimerase GDP_Man_Dehyd

Protein Analysis

128

Amino Acids

14.26

Weight (kDa)

5.02

Isoelectric Point (pI)

22.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 2 - 82 2.1e-10 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 185
AclWI GGATC 1 cut(s) 24
AcsI RAATTY 1 cut(s) 235
AfiI CCNNNNNNNGG 2 cut(s) 47, 210
AgsI TTSAA 2 cut(s) 235, 325
AluBI AGCT 2 cut(s) 178, 376
AluI AGCT 2 cut(s) 178, 376
AlwI GGATC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 235
AseI ATTAAT 1 cut(s) 105
AspLEI GCGC 1 cut(s) 8
AsuHPI GGTGA 3 cut(s) 182, 193, 278
BceAI ACGGC 1 cut(s) 368
BfaI CTAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 216
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 210
Bse1I ACTGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 47, 210
BseNI ACTGG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 47, 210
BsmFI GGGAC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 16, 163
BspACI CCGC 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 1 cut(s) 24
BspQI GCTCTTC 1 cut(s) 168
BsrI ACTGG 1 cut(s) 211
BssMI GATC 2 cut(s) 16, 163
Bst4CI ACNGT 2 cut(s) 296, 343
Bst6I CTCTTC 1 cut(s) 168
BstF5I GGATG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 2 cut(s) 19, 166
BstMBI GATC 2 cut(s) 16, 163
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 3 cut(s) 204, 301, 339
CfoI GCGC 1 cut(s) 8
CviJI RGCY 4 cut(s) 51, 178, 290, 376
CviKI_1 RGCY 4 cut(s) 51, 178, 290, 376
DpnI GATC 2 cut(s) 18, 165
DpnII GATC 2 cut(s) 16, 163
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
FaiI YATR 1 cut(s) 29
FaqI GGGAC 1 cut(s) 273
FokI GGATG 1 cut(s) 200
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 7
HaeII RGCGCY 1 cut(s) 9
HhaI GCGC 1 cut(s) 8
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 1 cut(s) 85
HphI GGTGA 3 cut(s) 182, 193, 278
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 2 cut(s) 89, 348
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 86, 331
HpyCH4III ACNGT 2 cut(s) 296, 343
HpyCH4V TGCA 1 cut(s) 80
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 16, 163
LguI GCTCTTC 1 cut(s) 168
LpnPI CCDG 3 cut(s) 74, 192, 260
MaeI CTAG 1 cut(s) 348
MalI GATC 2 cut(s) 18, 165
MboI GATC 2 cut(s) 16, 163
MboII GAAGA 3 cut(s) 16, 185, 281
MflI RGATCY 1 cut(s) 16
MluCI AATT 3 cut(s) 102, 106, 235
MnlI CCTC 3 cut(s) 41, 60, 222
MseI TTAA 1 cut(s) 105
NdeII GATC 2 cut(s) 16, 163
NlaIV GGNNCC 1 cut(s) 216
PciSI GCTCTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 85
PshBI ATTAAT 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 216
PsuI RGATCY 1 cut(s) 16
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 2 cut(s) 16, 163
SetI ASST 6 cut(s) 97, 180, 233, 253, 323, 378
Sse9I AATT 3 cut(s) 102, 106, 235
SsiI CCGC 1 cut(s) 185
SspMI CTAG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 296, 343
TaqI TCGA 1 cut(s) 54
TasI AATT 3 cut(s) 102, 106, 235
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 3 cut(s) 211, 301, 346
TspDTI ATGAA 3 cut(s) 16, 75, 350
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 3 cut(s) 211, 301, 346
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 1 cut(s) 235
XbaI TCTAGA 1 cut(s) 347
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.