Rorug06G0338100

rhamnose biosynthetic enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002188
Physical Location & Seq
Forward (+)
49002968 .. 49003611
644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0338100.1

Sequence Viewer

Length: 348 bp
ATGTATAAGGAAGATGGGCTTACAGGTGGCCATGTGATAATGTTGGGGGCAGATCCTTTGAGTAGAGCTGCGGCCATTGAAGCTCTGCATGCCTATCCTGGTGGGTTAATTGCTAGGATTGCGAGGTTTAGGGAAATTGATATCAAAGAGGTGCCAACCTTTGCAAAAGGATCAGATTTCTCATTATTCATTGCACATGCTGAGATTAGTATAAACCTTGACTGGTATAATCTAGGTGGTTTGCAGGTAGGAGGTGGGATCAATTCAGATAATTCTTTGCAATACATAGAAGAAGGGGCTAGCCACGTCATTGTCACTTCTGTGAGTTCTGTTTTTCTCCTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 map00520
Pfam Domains
Protein Families
Epimerase GDP_Man_Dehyd

Protein Analysis

115

Amino Acids

12.34

Weight (kDa)

4.96

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 151
AciI CCGC 1 cut(s) 71
AclWI GGATC 3 cut(s) 47, 178, 266
AcoI YGGCCR 2 cut(s) 28, 72
AgsI TTSAA 1 cut(s) 80
AjiI CACGTC 1 cut(s) 307
AjnI CCWGG 1 cut(s) 97
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 2 cut(s) 68, 83
AluI AGCT 2 cut(s) 68, 83
AlwI GGATC 3 cut(s) 47, 178, 266
AoxI GGCC 2 cut(s) 28, 72
ApeKI GCWGC 1 cut(s) 68
AsuNHI GCTAGC 1 cut(s) 299
BalI TGGCCA 1 cut(s) 30
BanI GGYRCC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 99
BfaI CTAG 3 cut(s) 114, 233, 300
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 2 cut(s) 69, 72
BlsI GCNGC 2 cut(s) 70, 73
Bme1390I CCNGG 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 99
BmtI GCTAGC 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 189
BseBI CCWGG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 30, 74
BshNI GGYRCC 1 cut(s) 151
BsnI GGCC 2 cut(s) 30, 74
Bsp143I GATC 3 cut(s) 52, 170, 258
BspACI CCGC 1 cut(s) 71
BspANI GGCC 2 cut(s) 30, 74
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 153
BspMI ACCTGC 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 303
BspPI GGATC 3 cut(s) 47, 178, 266
BspT107I GGYRCC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 1 cut(s) 227
BssMI GATC 3 cut(s) 52, 170, 258
Bst2UI CCWGG 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 90, 301
BstDEI CTNAG 1 cut(s) 201
BstKTI GATC 3 cut(s) 55, 173, 261
BstMBI GATC 3 cut(s) 52, 170, 258
BstMWI GCNNNNNNNGC 3 cut(s) 80, 89, 119
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 2 cut(s) 92, 200
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 2 cut(s) 30, 74
BtrI CACGTC 1 cut(s) 307
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 90, 301
CviAII CATG 3 cut(s) 32, 89, 197
CviJI RGCY 7 cut(s) 19, 30, 68, 74, 83, 299, 303
CviKI_1 RGCY 7 cut(s) 19, 30, 68, 74, 83, 299, 303
DdeI CTNAG 1 cut(s) 201
DpnI GATC 3 cut(s) 54, 172, 260
DpnII GATC 3 cut(s) 52, 170, 258
EaeI YGGCCR 2 cut(s) 28, 72
Eco32I GATATC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 97
EcoRV GATATC 1 cut(s) 142
FaeI CATG 3 cut(s) 35, 92, 200
FaiI YATR 7 cut(s) 6, 33, 90, 198, 212, 228, 287
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 3 cut(s) 31, 88, 196
Fnu4HI GCNGC 2 cut(s) 69, 72
Fsp4HI GCNGC 2 cut(s) 69, 72
FspBI CTAG 3 cut(s) 114, 233, 300
GluI GCNGC 2 cut(s) 69, 72
HaeIII GGCC 2 cut(s) 30, 74
Hin1II CATG 3 cut(s) 35, 92, 200
Hpy188I TCNGA 2 cut(s) 175, 268
HpyAV CCTTC 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 5 cut(s) 88, 164, 194, 244, 280
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 89, 119
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 3 cut(s) 35, 92, 200
Kzo9I GATC 3 cut(s) 52, 170, 258
LpnPI CCDG 5 cut(s) 9, 84, 111, 208, 230
Lsp1109I GCAGC 1 cut(s) 55
MaeI CTAG 3 cut(s) 114, 233, 300
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 313
MalI GATC 3 cut(s) 54, 172, 260
MboI GATC 3 cut(s) 52, 170, 258
MboII GAAGA 3 cut(s) 23, 302, 334
MflI RGATCY 1 cut(s) 52
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 4 cut(s) 108, 135, 262, 271
MluNI TGGCCA 1 cut(s) 30
MnlI CCTC 3 cut(s) 117, 142, 245
Mox20I TGGCCA 1 cut(s) 30
MscI TGGCCA 1 cut(s) 30
MseI TTAA 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 80, 89, 119
NdeII GATC 3 cut(s) 52, 170, 258
NheI GCTAGC 1 cut(s) 299
NlaIII CATG 3 cut(s) 35, 92, 200
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 2 cut(s) 92, 200
OliI CACNNNNGTG 1 cut(s) 320
PaeI GCATGC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 70, 73
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 153
PsuI RGATCY 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 2 cut(s) 69, 72
Sau3AI GATC 3 cut(s) 52, 170, 258
ScrFI CCNGG 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 320
SphI GCATGC 1 cut(s) 92
Sse9I AATT 4 cut(s) 108, 135, 262, 271
SsiI CCGC 1 cut(s) 71
SspMI CTAG 3 cut(s) 114, 233, 300
StyD4I CCNGG 1 cut(s) 97
TaiI ACGT 1 cut(s) 309
TasI AATT 4 cut(s) 108, 135, 262, 271
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 178
XceI RCATGY 2 cut(s) 92, 200
XspI CTAG 3 cut(s) 114, 233, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.