Rh6CG463200

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016773
Physical Location & Seq
Forward (+)
63631183 .. 63633317
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG463200.1

Sequence Viewer

Length: 1284 bp
ATGGCATCACCACCATTAGAGCCTCATGTCGTAATCTTTCCTTTCATGGCTCATGGCCACACTCTTCCATTACTAGACCTCTCCAAAGCTCTCTCCCACCGGAGAATCAAAGTGACCATCATCTCAACTCCTTCAAATGTCAAATCCATTTCCGAAAACTTAACGTATCACCCAAACATAATCATCCTCCCAATCCCTTTCCCCACGGATATCGATGCCCTCGGCCTACCTCGAGGAATTGAAAATACCTCCCAACTCCCATCTATGGATTTCTGGTTCCCCTTCGTCCTCGCCACCAAGCAACTCCAAAAACCCTTCGAACAAGTCCTACAATCCATGCGCGATTCCAAATCCCTTCCCATGTGCGTGATCTCAGATTTCTTCTTGGGCTGGACACTCAAATCCTGCCAGGATTTCGGAGTTCCGAGGCTGGTGTTTCATGGCATGGGAGTCTTGTCAATGGCCATATGCAAAAGTGTGCTCGTGCATAGGCCACACTTGAAAGCAAAGTCGGTTTCAGAGCCATTAGACTTTCCCGGCCTTAAGCTTCCCTTTGTTTTGGATACTTCAGAATTACCAGAGATGATTCTTCAAGTGGAAGGTGGTGTTGCTAAAAATTATATTAGCGGAGTACCCATCAGCCAGAAAAAACAAGGCCTTGTGTTAACAGAGTGGCTTAATGAGCAAGTGACTCTCGGCTCTGTGATTTATGTCTCATTTGGAACACAGGCTGATTTGTCAGGGACTCAACTTGATGAGGTGGTTTTTGGCTTAGAGGAGGCTGGCGTTCCATTTGTCTTGGTGGTGCGATCGACCACATGGTCTCCACCAAACGGACTTGAAGAGAGATTAAAAGGTAAGGGCTTGATCACGAGGGAGTGGGTGGATCAACGCCAAATTCTATCACACCGAGCAGTAGGAGGTTTCCTGAGCCACTGTGGTTGGAACTCGGTGATCGAAAGCATCTCCGCCGGGGTGCCTATTTTGGCCTGGCCTATGATCGCAGAGCAGTGTCTGAATGCCAAGCTTGTTGCTGAAGGACTCGGAGCAGGACTTGGAATCAAAAAAGTGAAAGATCAGTCGGGGTCGGGATTTGAAGTCTCAAGGCAAGCAATCTGCGAAGGCGTGAGAGAGCTGATGTTGGGAGGAGAGAAAGGAAGGAGTGCAAAGGAGAGAGCACAAGCCCTGGGAAGAGTAGCTTGGCGTGCGGTTCAAAAAGGTGGTTCCTCCTATCAAGCCCTAGGCAAGCTTATAGACCAACTAAGGGCATCTTCTGCCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

427

Amino Acids

46.59

Weight (kDa)

8.65

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 234 - 347 2.5e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36640
malus_domestica MD15G1106200.v1.1
prunus_persica Prupe.1G458200_v2.0.a1 Prupe.1G458400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0305151 RchiOBHm_Chr6g0305161
rosa_laevigata RLG00000010913
rosa_multiflora Rmu_sc0000061.1_g000018
rosa_roxburghii Rroxscaffold_7G00163100
rosa_rugosa Rorug06G0338300
rosa_samantha Rh6AG449800 Rh6CG463200 Rh6DG450400
rosa_wichuraiana Rw6G039170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 820
AbsI CCTCGAGG 1 cut(s) 231
AccB1I GGYRCC 1 cut(s) 976
AccII CGCG 1 cut(s) 342
AciI CCGC 3 cut(s) 627, 969, 1208
AclWI GGATC 1 cut(s) 894
AcoI YGGCCR 2 cut(s) 55, 462
AcsI RAATTY 1 cut(s) 897
AcuI CTGAAG 2 cut(s) 552, 1056
AfaI GTAC 1 cut(s) 633
AfiI CCNNNNNNNGG 3 cut(s) 265, 833, 1264
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 7 cut(s) 135, 242, 502, 593, 842, 1097, 1214
AjnI CCWGG 3 cut(s) 408, 989, 1185
AjuI GAANNNNNNNTTGG 2 cut(s) 1183, 1215
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 6 cut(s) 89, 547, 1027, 1135, 1199, 1249
AluI AGCT 6 cut(s) 89, 547, 1027, 1135, 1199, 1249
Alw21I GWGCWC 2 cut(s) 483, 1180
Alw26I GTCTC 3 cut(s) 718, 828, 1105
AlwI GGATC 1 cut(s) 894
AlwNI CAGNNNCTG 1 cut(s) 1015
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 8 cut(s) 55, 223, 462, 491, 538, 655, 987, 992
ApoI RAATTY 1 cut(s) 897
AspA2I CCTAGG 1 cut(s) 1240
AspLEI GCGC 1 cut(s) 342
AsuC2I CCSGG 2 cut(s) 537, 973
AsuHPI GGTGA 2 cut(s) 161, 964
AsuII TTCGAA 1 cut(s) 318
AvaI CYCGRG 1 cut(s) 231
AvrII CCTAGG 1 cut(s) 1240
BalI TGGCCA 2 cut(s) 57, 464
BanI GGYRCC 1 cut(s) 976
BauI CACGAG 2 cut(s) 482, 871
Bbv12I GWGCWC 2 cut(s) 483, 1180
BccI CCATC 3 cut(s) 125, 268, 644
BciT130I CCWGG 3 cut(s) 410, 991, 1187
BciVI GTATCC 1 cut(s) 556
BclI TGATCA 1 cut(s) 867
BcnI CCSGG 2 cut(s) 537, 973
BcoDI GTCTC 3 cut(s) 718, 828, 1105
BfaI CTAG 2 cut(s) 74, 1241
BfrI CTTAAG 1 cut(s) 542
BfuI GTATCC 1 cut(s) 556
BlnI CCTAGG 1 cut(s) 1240
Bme1390I CCNGG 5 cut(s) 410, 537, 973, 991, 1187
BmeT110I CYCGRG 1 cut(s) 231
BmiI GGNNCC 3 cut(s) 278, 978, 1225
BmrFI CCNGG 5 cut(s) 410, 537, 973, 991, 1187
BmsI GCATC 4 cut(s) 14, 205, 972, 1277
Bpu10I CCTNAGC 1 cut(s) 929
Bpu14I TTCGAA 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 1087
BpuMI CCSGG 2 cut(s) 537, 973
Bsa29I ATCGAT 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 828
BsaJI CCNNGG 7 cut(s) 204, 220, 425, 972, 1185, 1186, 1240
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 808, 838
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 833, 1264
BseBI CCWGG 3 cut(s) 410, 991, 1187
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 7 cut(s) 204, 220, 425, 972, 1185, 1186, 1240
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 3 cut(s) 265, 833, 1264
BseMII CTCAG 2 cut(s) 387, 920
BseRI GAGGAG 2 cut(s) 791, 1161
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 812
BshFI GGCC 8 cut(s) 57, 225, 464, 493, 540, 657, 989, 994
BshNI GGYRCC 1 cut(s) 976
BshVI ATCGAT 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 812
BsiHKAI GWGCWC 2 cut(s) 483, 1180
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 3 cut(s) 100, 537, 972
BslFI GGGAC 1 cut(s) 757
BslI CCNNNNNNNGG 3 cut(s) 265, 833, 1264
BsmAI GTCTC 3 cut(s) 718, 828, 1105
BsmFI GGGAC 1 cut(s) 757
BsmI GAATGC 1 cut(s) 1024
BsnI GGCC 8 cut(s) 57, 225, 464, 493, 540, 657, 989, 994
Bso31I GGTCTC 1 cut(s) 828
BsoBI CYCGRG 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 483, 1180
Bsp143I GATC 7 cut(s) 369, 809, 867, 886, 954, 999, 1075
BspACI CCGC 3 cut(s) 627, 969, 1208
BspANI GGCC 8 cut(s) 57, 225, 464, 493, 540, 657, 989, 994
BspCNI CTCAG 2 cut(s) 386, 921
BspDI ATCGAT 1 cut(s) 213
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 3 cut(s) 278, 978, 1225
BspPI GGATC 1 cut(s) 894
BspT104I TTCGAA 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 976
BspTI CTTAAG 1 cut(s) 542
BspTNI GGTCTC 1 cut(s) 828
BssECI CCNNGG 7 cut(s) 204, 220, 425, 972, 1185, 1186, 1240
BssMI GATC 7 cut(s) 369, 809, 867, 886, 954, 999, 1075
BssSI CACGAG 2 cut(s) 482, 871
BssT1I CCWWGG 1 cut(s) 1240
Bst2BI CACGAG 2 cut(s) 482, 871
Bst2UI CCWGG 3 cut(s) 410, 991, 1187
Bst4CI ACNGT 1 cut(s) 938
Bst6I CTCTTC 3 cut(s) 69, 837, 1186
BstAFI CTTAAG 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 1274
BstBI TTCGAA 1 cut(s) 318
BstC8I GCNNGC 4 cut(s) 784, 1110, 1206, 1247
BstDEI CTNAG 4 cut(s) 373, 772, 929, 1262
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 342
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 7 cut(s) 372, 812, 870, 889, 957, 1002, 1078
BstMAI GTCTC 3 cut(s) 718, 828, 1105
BstMBI GATC 7 cut(s) 369, 809, 867, 886, 954, 999, 1075
BstMCI CGRYCG 1 cut(s) 812
BstMWI GCNNNNNNNGC 3 cut(s) 682, 1205, 1274
BstNI CCWGG 3 cut(s) 410, 991, 1187
BstSCI CCNGG 5 cut(s) 408, 535, 971, 989, 1185
BstUI CGCG 1 cut(s) 342
Bsu15I ATCGAT 1 cut(s) 213
BsuI GTATCC 1 cut(s) 556
BsuRI GGCC 8 cut(s) 57, 225, 464, 493, 540, 657, 989, 994
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 183
BtsI GCAGTG 1 cut(s) 1016
BtsIMutI CAGTG 2 cut(s) 934, 1016
Cac8I GCNNGC 4 cut(s) 784, 1110, 1206, 1247
CaiI CAGNNNCTG 1 cut(s) 1015
CfoI GCGC 1 cut(s) 342
ClaI ATCGAT 1 cut(s) 213
Csp6I GTAC 1 cut(s) 632
CspCI CAANNNNNGTGG 2 cut(s) 923, 958
CviAII CATG 8 cut(s) 26, 46, 53, 337, 361, 440, 445, 819
CviQI GTAC 1 cut(s) 632
DdeI CTNAG 4 cut(s) 373, 772, 929, 1262
DpnI GATC 7 cut(s) 371, 811, 869, 888, 956, 1001, 1077
DpnII GATC 7 cut(s) 369, 809, 867, 886, 954, 999, 1075
DrdI GACNNNNNNGTC 1 cut(s) 820
DseDI GACNNNNNNGTC 1 cut(s) 820
EaeI YGGCCR 2 cut(s) 55, 462
Eam1104I CTCTTC 3 cut(s) 69, 837, 1186
EarI CTCTTC 3 cut(s) 69, 837, 1186
EciI GGCGGA 1 cut(s) 958
Eco130I CCWWGG 1 cut(s) 1240
Eco147I AGGCCT 1 cut(s) 657
Eco31I GGTCTC 1 cut(s) 828
Eco32I GATATC 1 cut(s) 211
Eco57I CTGAAG 2 cut(s) 552, 1056
Eco88I CYCGRG 1 cut(s) 231
EcoRII CCWGG 3 cut(s) 408, 989, 1185
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 1240
ErhI CCWWGG 1 cut(s) 1240
FaeI CATG 8 cut(s) 29, 49, 56, 340, 364, 443, 448, 822
FalI AAGNNNNNCTT 5 cut(s) 536, 568, 1183, 1215, 1255
FaqI GGGAC 1 cut(s) 757
FatI CATG 8 cut(s) 25, 45, 52, 336, 360, 439, 444, 818
FauNDI CATATG 1 cut(s) 467
FbaI TGATCA 1 cut(s) 867
FokI GGATG 1 cut(s) 170
FspBI CTAG 2 cut(s) 74, 1241
GlaI GCGC 1 cut(s) 341
HaeIII GGCC 8 cut(s) 57, 225, 464, 493, 540, 657, 989, 994
HapII CCGG 3 cut(s) 100, 537, 972
HhaI GCGC 1 cut(s) 342
Hin1II CATG 8 cut(s) 29, 49, 56, 340, 364, 443, 448, 822
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HincII GTYRAC 1 cut(s) 666
HindII GTYRAC 1 cut(s) 666
HindIII AAGCTT 3 cut(s) 545, 1025, 1247
HinfI GANTC 8 cut(s) 105, 344, 450, 586, 691, 745, 1041, 1059
HpaI GTTAAC 1 cut(s) 666
HpaII CCGG 3 cut(s) 100, 537, 972
HphI GGTGA 2 cut(s) 161, 964
Hpy166II GTNNAC 1 cut(s) 666
Hpy188I TCNGA 8 cut(s) 154, 376, 419, 426, 520, 571, 1017, 1046
Hpy188III TCNNGA 3 cut(s) 871, 928, 1089
Hpy8I GTNNAC 1 cut(s) 666
HpyAV CCTTC 8 cut(s) 141, 292, 325, 365, 593, 1031, 1115, 1152
HpyCH4III ACNGT 1 cut(s) 938
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 3 cut(s) 471, 487, 1166
HpyF10VI GCNNNNNNNGC 3 cut(s) 682, 1205, 1274
HpyF3I CTNAG 4 cut(s) 373, 772, 929, 1262
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 8 cut(s) 29, 49, 56, 340, 364, 443, 448, 822
HspAI GCGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 867
KspAI GTTAAC 1 cut(s) 666
Kzo9I GATC 7 cut(s) 369, 809, 867, 886, 954, 999, 1075
LmnI GCTCC 1 cut(s) 1046
LweI GCATC 4 cut(s) 14, 205, 972, 1277
MaeI CTAG 2 cut(s) 74, 1241
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 112, 688
MalI GATC 7 cut(s) 371, 811, 869, 888, 956, 1001, 1077
MboI GATC 7 cut(s) 369, 809, 867, 886, 954, 999, 1075
MboII GAAGA 6 cut(s) 56, 373, 581, 854, 1203, 1263
MhlI GDGCHC 2 cut(s) 483, 1180
MlsI TGGCCA 2 cut(s) 57, 464
MluCI AATT 4 cut(s) 237, 572, 616, 897
MluNI TGGCCA 2 cut(s) 57, 464
MlyI GAGTC 4 cut(s) 459, 685, 739, 1035
MmeI TCCRAC 1 cut(s) 923
Mox20I TGGCCA 2 cut(s) 57, 464
MscI TGGCCA 2 cut(s) 57, 464
MseI TTAA 5 cut(s) 161, 543, 665, 678, 851
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 2 cut(s) 57, 464
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 3 cut(s) 100, 537, 972
MspR9I CCNGG 5 cut(s) 410, 537, 973, 991, 1187
Mva1269I GAATGC 1 cut(s) 1024
MvaI CCWGG 3 cut(s) 410, 991, 1187
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 682, 1205, 1274
NciI CCSGG 2 cut(s) 537, 973
NdeI CATATG 1 cut(s) 467
NdeII GATC 7 cut(s) 369, 809, 867, 886, 954, 999, 1075
NlaIII CATG 8 cut(s) 29, 49, 56, 340, 364, 443, 448, 822
NlaIV GGNNCC 3 cut(s) 278, 978, 1225
NmeAIII GCCGAG 2 cut(s) 201, 675
NmuCI GTSAC 2 cut(s) 112, 688
NspV TTCGAA 1 cut(s) 318
PaeR7I CTCGAG 1 cut(s) 231
PasI CCCWGGG 1 cut(s) 1186
PceI AGGCCT 1 cut(s) 657
PctI GAATGC 1 cut(s) 1024
PfeI GAWTC 4 cut(s) 105, 344, 586, 1059
Ple19I CGATCG 1 cut(s) 812
PleI GAGTC 4 cut(s) 458, 685, 739, 1035
PpsI GAGTC 4 cut(s) 458, 685, 739, 1035
Psp6I CCWGG 3 cut(s) 408, 989, 1185
PspGI CCWGG 3 cut(s) 408, 989, 1185
PspN4I GGNNCC 3 cut(s) 278, 978, 1225
PspXI VCTCGAGB 1 cut(s) 231
PsrI GAACNNNNNNTAC 2 cut(s) 312, 344
PstNI CAGNNNCTG 1 cut(s) 1015
PvuI CGATCG 1 cut(s) 812
RsaI GTAC 1 cut(s) 633
RsaNI GTAC 1 cut(s) 632
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 5 cut(s) 161, 543, 665, 678, 851
Sau3AI GATC 7 cut(s) 369, 809, 867, 886, 954, 999, 1075
SchI GAGTC 4 cut(s) 459, 685, 739, 1035
ScrFI CCNGG 5 cut(s) 410, 537, 973, 991, 1187
SduI GDGCHC 2 cut(s) 483, 1180
SfaNI GCATC 4 cut(s) 14, 205, 972, 1277
Sfr274I CTCGAG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 318
SlaI CTCGAG 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 3 cut(s) 231, 542, 1102
SmoI CTYRAG 3 cut(s) 231, 542, 1102
Sse9I AATT 4 cut(s) 237, 572, 616, 897
SseBI AGGCCT 1 cut(s) 657
SsiI CCGC 3 cut(s) 627, 969, 1208
SspMI CTAG 2 cut(s) 74, 1241
StuI AGGCCT 1 cut(s) 657
StyD4I CCNGG 5 cut(s) 408, 535, 971, 989, 1185
StyI CCWWGG 1 cut(s) 1240
TaaI ACNGT 1 cut(s) 938
TaiI ACGT 1 cut(s) 167
TaqI TCGA 5 cut(s) 213, 232, 318, 812, 957
TasI AATT 4 cut(s) 237, 572, 616, 897
TfiI GAWTC 4 cut(s) 105, 344, 586, 1059
Tru1I TTAA 5 cut(s) 161, 543, 665, 678, 851
Tru9I TTAA 5 cut(s) 161, 543, 665, 678, 851
TscAI CASTG 2 cut(s) 941, 1016
TseFI GTSAC 2 cut(s) 112, 688
Tsp45I GTSAC 2 cut(s) 112, 688
TspDTI ATGAA 2 cut(s) 34, 428
TspGWI ACGGA 2 cut(s) 221, 849
TspRI CASTG 2 cut(s) 941, 1016
Vha464I CTTAAG 1 cut(s) 542
XapI RAATTY 1 cut(s) 897
XhoI CTCGAG 1 cut(s) 231
XmaJI CCTAGG 1 cut(s) 1240
XspI CTAG 2 cut(s) 74, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.