MD15G1106200.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016773
Physical Location & Seq
Reverse (-)
7412846 .. 7415161
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1106200.v1.1.491

Sequence Viewer

Length: 1431 bp
ATGGCATCAGCACCATCAACTCCCTATGTAGTAATCTTCCCTTTCATGGCTTACGGCCACACTCTTCCATTACTGGACCTCTCGAAAGCTCTCTCCCACCGGAAAATCAAGGTGTCCATCATCACAACTCCATCAAATGCAAAATCAGTTGCCCAACACCTAGCAAACTACCAAAATATAGACTTGATTGAAATCCCATTTCCCACCATCGATGGCCTTCCTCAAGGTTGTGAAAACACCTCCCAACTTCCATCCATGGCTTTCTATGTCCCTTTCCTCGTGGCCACCAAAAAACTCCAAACCCCTTTCGAACAAGTCCTACAAGGAATGAGGGAATCCAAATCCCTTCCCATTTGTGTCATCTCTGACTTCTTTTTGGGTTGGACTCTCTCTTCATGCAGATCCTTTGGGGTCCCTAGGTTGGTTTTTCATGGCATGGGGGTCTTATCAATGGCTATATGCAAAGCTGTGTGCGTGCACATGCCACACACGAAAGGGAAGTCGGTTTTCGACCCCATAGAGTTGCCAGGTCTCAAGCTTCCCTTTGATCTAAGTGTTTCGGACTTACCTGCTCAACTCATTCAAGCAACTGATGAGAAGGACCCTTTTTCTCAATTCATAGACGCTGTGGGAGAAGCTGACATCAATAGTTGGGGGGTTATTGTGAACAGCTTTGAGGAGATAGAGAGCGGAACTGTTTCTTCATTTGAAGCTTTCTATGAAAATGGAGCTAGAGCTTGGTGTTTAGGACCTTTGCTGTTGTATGAAAAAGTTGAAGGTGTTGAGAAACACATCAGCCACAACCAACCCAGCAAGTTAATGCAATGGCTCAATGACCAAGTGACTCTAGGCTCTGTGCTATATGTCTCGTTCGGCACGCAAGCAGACTTGTCAGATGCTCAACTTGATGAAGTGGGTTTGGGTTTGGAGGAGGCTGGGGTTCCATTTTTATTGGTGGTTCGATCAACCACTTGGTCTCCACCAAATGGACTTGAAGAGAGGTTGAAAGGTAAAGGATTGATCATAAGGGAATGGGTTGACCAGCGCCAAATACTGTCACACCGAGCAGTCGGAGGGTTTTTTAGTCACTGTGGTTGGAACTCAGTGCTTGAAAGTATATCTGCTGGAGTGCCAATCTTGGCTTGGCCTATGATAGCTGAGCAGTCTTTGAATGCTAAACTTATTGCCGAAGGACTTGGGGCTGGACTTGGCGTTACAAAGAGCCATGATTTGGGGTCAGGAATTGAGGTTTCGAGGCAGGCAGTCTGTGAAGGAGTGAGAGAGTTGATGGGAGGAGAGAAGGGAAGGGATGCAAGGGAGAGAGCACAAGCTTTGGGAAGAGTAGCTTGGCGTGCGGTTCAAGAAGGTGGTTCGTCCAATCAAGCCCTAAAAATGCTTATTGACCAACTATGTGCATGTTATGCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

477

Amino Acids

51.82

Weight (kDa)

5.53

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 255 - 398 5.6e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36640
malus_domestica MD15G1106200.v1.1
prunus_persica Prupe.1G458200_v2.0.a1 Prupe.1G458400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0305151 RchiOBHm_Chr6g0305161
rosa_laevigata RLG00000010913
rosa_multiflora Rmu_sc0000061.1_g000018
rosa_roxburghii Rroxscaffold_7G00163100
rosa_rugosa Rorug06G0338300
rosa_samantha Rh6AG449800 Rh6CG463200 Rh6DG450400
rosa_wichuraiana Rw6G039170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 577
AccB7I CCANNNNNTGG 2 cut(s) 986, 1231
AccBSI CCGCTC 1 cut(s) 690
AciI CCGC 2 cut(s) 690, 1355
AclWI GGATC 1 cut(s) 396
AcoI YGGCCR 2 cut(s) 55, 282
AfiI CCNNNNNNNGG 4 cut(s) 46, 421, 986, 1231
AgsI TTSAA 9 cut(s) 191, 584, 710, 776, 995, 1006, 1112, 1171, 1361
AjnI CCWGG 1 cut(s) 526
AjuI GAANNNNNNNTTGG 2 cut(s) 1330, 1362
Alw21I GWGCWC 2 cut(s) 480, 1327
Alw26I GTCTC 3 cut(s) 536, 871, 981
Alw44I GTGCAC 1 cut(s) 476
AlwI GGATC 1 cut(s) 396
AoxI GGCC 4 cut(s) 55, 214, 282, 1145
ApaLI GTGCAC 1 cut(s) 476
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
Asp700I GAANNNNTTC 1 cut(s) 697
AspA2I CCTAGG 1 cut(s) 416
AspLEI GCGC 1 cut(s) 1047
AspS9I GGNCC 4 cut(s) 76, 412, 601, 749
AsuII TTCGAA 1 cut(s) 309
AvaII GGWCC 4 cut(s) 76, 412, 601, 749
AvrII CCTAGG 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 480
BalI TGGCCA 1 cut(s) 284
BauI CACGAG 1 cut(s) 278
Bbv12I GWGCWC 2 cut(s) 480, 1327
BccI CCATC 7 cut(s) 22, 125, 139, 206, 215, 259, 1282
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 528
BclI TGATCA 1 cut(s) 1020
BcoDI GTCTC 3 cut(s) 536, 871, 981
BfaI CTAG 4 cut(s) 161, 417, 732, 848
BfoI RGCGCY 1 cut(s) 1048
BfuAI ACCTGC 1 cut(s) 577
BlnI CCTAGG 1 cut(s) 416
BlpI GCTNAGC 1 cut(s) 1158
Bme1390I CCNGG 1 cut(s) 528
Bme18I GGWCC 4 cut(s) 76, 412, 601, 749
BmgT120I GGNCC 4 cut(s) 76, 412, 601, 749
BmiI GGNNCC 4 cut(s) 413, 414, 603, 942
BmrFI CCNGG 1 cut(s) 528
BmsI GCATC 3 cut(s) 14, 886, 1300
BpmI CTGGAG 1 cut(s) 1146
Bpu1102I GCTNAGC 1 cut(s) 1158
Bpu14I TTCGAA 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 207, 518
Bsa29I ATCGAT 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 191
BsaI GGTCTC 2 cut(s) 536, 981
BsaJI CCNNGG 2 cut(s) 255, 416
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 961, 991
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 421, 986, 1231
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 830
Bse8I GATNNNNATC 1 cut(s) 191
BseBI CCWGG 1 cut(s) 528
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 255, 416
BseGI GGATG 2 cut(s) 251, 1315
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 4 cut(s) 46, 421, 986, 1231
BseMI GCAATG 1 cut(s) 830
BseMII CTCAG 2 cut(s) 1116, 1149
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 3 cut(s) 692, 944, 1308
BseSI GKGCMC 1 cut(s) 480
BseYI CCCAGC 2 cut(s) 809, 935
BshFI GGCC 4 cut(s) 57, 216, 284, 1147
BshVI ATCGAT 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 480, 1327
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 2 cut(s) 254, 398
BslI CCNNNNNNNGG 4 cut(s) 46, 421, 986, 1231
BsmAI GTCTC 3 cut(s) 536, 871, 981
BsmFI GGGAC 2 cut(s) 254, 398
BsmI GAATGC 1 cut(s) 1177
BsnI GGCC 4 cut(s) 57, 216, 284, 1147
Bso31I GGTCTC 2 cut(s) 536, 981
Bsp119I TTCGAA 1 cut(s) 309
Bsp1286I GDGCHC 2 cut(s) 480, 1327
Bsp143I GATC 4 cut(s) 401, 547, 962, 1020
Bsp1720I GCTNAGC 1 cut(s) 1158
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 2 cut(s) 690, 1355
BspANI GGCC 4 cut(s) 57, 216, 284, 1147
BspCNI CTCAG 2 cut(s) 1115, 1150
BspDI ATCGAT 1 cut(s) 210
BspLI GGNNCC 4 cut(s) 413, 414, 603, 942
BspMI ACCTGC 1 cut(s) 577
BspPI GGATC 1 cut(s) 396
BspT104I TTCGAA 1 cut(s) 309
BspTNI GGTCTC 2 cut(s) 536, 981
BsrBI CCGCTC 1 cut(s) 690
BsrDI GCAATG 1 cut(s) 830
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 255, 416
BssMI GATC 4 cut(s) 401, 547, 962, 1020
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 2 cut(s) 255, 416
Bst2BI CACGAG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 3 cut(s) 697, 1056, 1091
Bst6I CTCTTC 4 cut(s) 69, 397, 990, 1333
BstAPI GCANNNNNTGC 1 cut(s) 1421
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 5 cut(s) 476, 878, 882, 1260, 1353
BstDEI CTNAG 3 cut(s) 551, 1102, 1158
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 2 cut(s) 251, 1315
BstH2I RGCGCY 1 cut(s) 1048
BstHHI GCGC 1 cut(s) 1047
BstKTI GATC 4 cut(s) 404, 550, 965, 1023
BstMAI GTCTC 3 cut(s) 536, 871, 981
BstMBI GATC 4 cut(s) 401, 547, 962, 1020
BstMWI GCNNNNNNNGC 2 cut(s) 1352, 1421
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 2 cut(s) 484, 1419
BstSCI CCNGG 1 cut(s) 526
BstSLI GKGCMC 1 cut(s) 480
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 4 cut(s) 57, 216, 284, 1147
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 2 cut(s) 251, 1315
BtsIMutI CAGTG 2 cut(s) 1087, 1110
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 5 cut(s) 476, 878, 882, 1260, 1353
CfoI GCGC 1 cut(s) 1047
Cfr13I GGNCC 4 cut(s) 76, 412, 601, 749
ClaI ATCGAT 1 cut(s) 210
CseI GACGC 1 cut(s) 632
CviAII CATG 8 cut(s) 46, 256, 396, 431, 436, 481, 1226, 1416
DdeI CTNAG 3 cut(s) 551, 1102, 1158
DpnI GATC 4 cut(s) 403, 549, 964, 1022
DpnII GATC 4 cut(s) 401, 547, 962, 1020
EaeI YGGCCR 2 cut(s) 55, 282
Eam1104I CTCTTC 4 cut(s) 69, 397, 990, 1333
EarI CTCTTC 4 cut(s) 69, 397, 990, 1333
Eco130I CCWWGG 2 cut(s) 255, 416
Eco31I GGTCTC 2 cut(s) 536, 981
Eco47I GGWCC 4 cut(s) 76, 412, 601, 749
EcoO109I RGGNCCY 3 cut(s) 412, 601, 749
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 2 cut(s) 255, 416
ErhI CCWWGG 2 cut(s) 255, 416
FaeI CATG 8 cut(s) 49, 259, 399, 434, 439, 484, 1229, 1419
FalI AAGNNNNNCTT 4 cut(s) 527, 559, 1330, 1362
FaqI GGGAC 2 cut(s) 254, 398
FatI CATG 8 cut(s) 45, 255, 395, 430, 435, 480, 1225, 1415
FbaI TGATCA 1 cut(s) 1020
FokI GGATG 2 cut(s) 238, 1322
FspBI CTAG 4 cut(s) 161, 417, 732, 848
GlaI GCGC 1 cut(s) 1046
GsaI CCCAGC 2 cut(s) 813, 939
GsuI CTGGAG 1 cut(s) 1146
HaeII RGCGCY 1 cut(s) 1048
HaeIII GGCC 4 cut(s) 57, 216, 284, 1147
HapII CCGG 1 cut(s) 100
HgaI GACGC 1 cut(s) 632
HhaI GCGC 1 cut(s) 1047
Hin1II CATG 8 cut(s) 49, 259, 399, 434, 439, 484, 1229, 1419
Hin6I GCGC 1 cut(s) 1045
HinP1I GCGC 1 cut(s) 1045
HincII GTYRAC 1 cut(s) 1039
HindII GTYRAC 1 cut(s) 1039
HindIII AAGCTT 3 cut(s) 536, 711, 1329
HinfI GANTC 3 cut(s) 335, 385, 844
HpaII CCGG 1 cut(s) 100
Hpy166II GTNNAC 3 cut(s) 478, 667, 1039
Hpy188I TCNGA 4 cut(s) 367, 562, 895, 1073
Hpy188III TCNNGA 3 cut(s) 82, 1239, 1361
Hpy8I GTNNAC 3 cut(s) 478, 667, 1039
HpyAV CCTTC 9 cut(s) 227, 356, 592, 770, 1184, 1265, 1294, 1299, 1358
HpyCH4III ACNGT 3 cut(s) 697, 1056, 1091
HpyCH4V TGCA 7 cut(s) 140, 399, 462, 478, 823, 1313, 1415
HpyF10VI GCNNNNNNNGC 2 cut(s) 1352, 1421
HpyF3I CTNAG 3 cut(s) 551, 1102, 1158
Hsp92II CATG 8 cut(s) 49, 259, 399, 434, 439, 484, 1229, 1419
HspAI GCGC 1 cut(s) 1045
KflI GGGWCCC 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 1020
Kzo9I GATC 4 cut(s) 401, 547, 962, 1020
LmnI GCTCC 1 cut(s) 728
LweI GCATC 3 cut(s) 14, 886, 1300
MaeI CTAG 4 cut(s) 161, 417, 732, 848
MaeIII GTNAC 4 cut(s) 841, 1056, 1085, 1213
MalI GATC 4 cut(s) 403, 549, 964, 1022
MbiI CCGCTC 1 cut(s) 690
MboI GATC 4 cut(s) 401, 547, 962, 1020
MboII GAAGA 6 cut(s) 28, 56, 384, 693, 1007, 1350
MflI RGATCY 1 cut(s) 401
MhlI GDGCHC 2 cut(s) 480, 1327
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 2 cut(s) 614, 1242
MluNI TGGCCA 1 cut(s) 284
MlyI GAGTC 2 cut(s) 379, 838
MmeI TCCRAC 3 cut(s) 362, 1051, 1076
Mox20I TGGCCA 1 cut(s) 284
MroXI GAANNNNTTC 1 cut(s) 697
MscI TGGCCA 1 cut(s) 284
MseI TTAA 1 cut(s) 818
Msp20I TGGCCA 1 cut(s) 284
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 1 cut(s) 528
Mva1269I GAATGC 1 cut(s) 1177
MvaI CCWGG 1 cut(s) 528
MwoI GCNNNNNNNGC 2 cut(s) 1352, 1421
NcoI CCATGG 1 cut(s) 255
NdeII GATC 4 cut(s) 401, 547, 962, 1020
NlaIII CATG 8 cut(s) 49, 259, 399, 434, 439, 484, 1229, 1419
NlaIV GGNNCC 4 cut(s) 413, 414, 603, 942
NmuCI GTSAC 3 cut(s) 841, 1056, 1085
NspI RCATGY 2 cut(s) 484, 1419
NspV TTCGAA 1 cut(s) 309
PctI GAATGC 1 cut(s) 1177
PdmI GAANNNNTTC 1 cut(s) 697
PfeI GAWTC 1 cut(s) 335
PflMI CCANNNNNTGG 2 cut(s) 986, 1231
PleI GAGTC 2 cut(s) 379, 838
PpsI GAGTC 2 cut(s) 379, 838
PpuMI RGGWCCY 3 cut(s) 412, 601, 749
Psp5II RGGWCCY 3 cut(s) 412, 601, 749
Psp6I CCWGG 1 cut(s) 526
PspFI CCCAGC 2 cut(s) 809, 935
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 4 cut(s) 413, 414, 603, 942
PspPI GGNCC 4 cut(s) 76, 412, 601, 749
PspPPI RGGWCCY 3 cut(s) 412, 601, 749
PsrI GAACNNNNNNTAC 2 cut(s) 303, 335
PsuI RGATCY 1 cut(s) 401
SaqAI TTAA 1 cut(s) 818
Sau3AI GATC 4 cut(s) 401, 547, 962, 1020
Sau96I GGNCC 4 cut(s) 76, 412, 601, 749
SchI GAGTC 2 cut(s) 379, 838
ScrFI CCNGG 1 cut(s) 528
SduI GDGCHC 2 cut(s) 480, 1327
SfaNI GCATC 3 cut(s) 14, 886, 1300
SfuI TTCGAA 1 cut(s) 309
SinI GGWCC 4 cut(s) 76, 412, 601, 749
SmlI CTYRAG 2 cut(s) 222, 533
SmoI CTYRAG 2 cut(s) 222, 533
Sse9I AATT 2 cut(s) 614, 1242
SsiI CCGC 2 cut(s) 690, 1355
SspMI CTAG 4 cut(s) 161, 417, 732, 848
StyD4I CCNGG 1 cut(s) 526
StyI CCWWGG 2 cut(s) 255, 416
TaaI ACNGT 3 cut(s) 697, 1056, 1091
TaqI TCGA 6 cut(s) 83, 210, 309, 510, 961, 1253
TasI AATT 2 cut(s) 614, 1242
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 818
Tru9I TTAA 1 cut(s) 818
TscAI CASTG 2 cut(s) 1094, 1110
TseFI GTSAC 3 cut(s) 841, 1056, 1085
Tsp45I GTSAC 3 cut(s) 841, 1056, 1085
TspDTI ATGAA 8 cut(s) 34, 384, 419, 607, 693, 735, 780, 924
TspRI CASTG 2 cut(s) 1094, 1110
Van91I CCANNNNNTGG 2 cut(s) 986, 1231
VneI GTGCAC 1 cut(s) 476
VpaK11BI GGWCC 4 cut(s) 76, 412, 601, 749
XceI RCATGY 2 cut(s) 484, 1419
XcmI CCANNNNNNNNNTGG 1 cut(s) 1140
XmaJI CCTAGG 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 697
XspI CTAG 4 cut(s) 161, 417, 732, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.