FvH4_2g37570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017167
Physical Location & Seq
Reverse (-)
27338064 .. 27338387
324 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37570.t1

Sequence Viewer

Length: 324 bp
ATGGAAGAGCAGCGCGAGAAGCAAGTAAGAGAGGAGGTGCAGCGGAAAGAGAAGGAGAAAGACAGCGTGATTTCAGATATGACGCCTGTTAACCGTGAGGCGTACGGCGGTGGATTGTACGGTCACGACGACAAGGATGATTCCGGCGAGGGTCGACGTCGTAAAGATGCCTCGGCGGCGGAGGAAAAGCCACATGTGGGGAGGGCGAGTGACACCCAAAGTGCCGATGGACCAGTTGAACCTAGCCAACCACCCAAGCATAAACCACCACCTTCCACCGGCGACCGAGATCTTGATATAACTGGCCAAACTTATATTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.92

Weight (kDa)

5.08

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42290
fragaria_vesca FvH4_2g37570
malus_domestica MD15G1003000.v1.1
prunus_persica Prupe.1G355200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304161
rosa_multiflora Rmu_co8059264.1_g000001
rosa_roxburghii Rroxscaffold_7G00164010
rosa_rugosa Rorug06G0328100
rosa_samantha Rh6AG442200 Rh6BG460600 Rh6CG454400 Rh6DG441600
rosa_wichuraiana Rw6G038330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 154
AccII CGCG 1 cut(s) 15
AciI CCGC 4 cut(s) 43, 108, 176, 179
AcoI YGGCCR 1 cut(s) 304
AcyI GRCGYC 2 cut(s) 83, 157
AfaI GTAC 2 cut(s) 104, 119
AfiI CCNNNNNNNGG 2 cut(s) 197, 278
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 1 cut(s) 239
AjuI GAANNNNNNNTTGG 1 cut(s) 300
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 10, 40
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 230
AvaII GGWCC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 306
BbvI GCAGC 2 cut(s) 22, 52
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 121
BfaI CTAG 1 cut(s) 243
BglI GCCNNNNNGGC 1 cut(s) 176
BglII AGATCT 1 cut(s) 289
BisI GCNGC 3 cut(s) 11, 41, 177
BlsI GCNGC 3 cut(s) 12, 42, 178
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmsI GCATC 1 cut(s) 157
BsaHI GRCGYC 2 cut(s) 83, 157
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 278
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 233, 307
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 197, 278
BseNI ACTGG 2 cut(s) 233, 307
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 22, 52
BsgI GTGCAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 15
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 1 cut(s) 306
BsiEI CGRYCG 1 cut(s) 286
BsiSI CCGG 2 cut(s) 144, 279
BsiWI CGTACG 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 197, 278
BsnI GGCC 1 cut(s) 306
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 4 cut(s) 43, 108, 176, 179
BspANI GGCC 1 cut(s) 306
BspFNI CGCG 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 2 cut(s) 233, 307
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 289
BssNI GRCGYC 2 cut(s) 83, 157
Bst4CI ACNGT 2 cut(s) 95, 122
BstACI GRCGYC 2 cut(s) 83, 157
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 15
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 1 cut(s) 292
BstMBI GATC 1 cut(s) 289
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 2 cut(s) 19, 176
BstNSI RCATGY 1 cut(s) 197
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 2 cut(s) 22, 52
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 306
BtsCI GGATG 1 cut(s) 142
CfoI GCGC 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 230
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 103, 118
CviAII CATG 1 cut(s) 194
CviJI RGCY 3 cut(s) 190, 246, 306
CviKI_1 RGCY 3 cut(s) 190, 246, 306
CviQI GTAC 2 cut(s) 103, 118
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
EaeI YGGCCR 1 cut(s) 304
EciI GGCGGA 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 230
FaeI CATG 1 cut(s) 197
FaiI YATR 5 cut(s) 80, 195, 261, 299, 315
FatI CATG 1 cut(s) 193
FblI GTMKAC 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 11, 41, 177
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 11, 41, 177
FspBI CTAG 1 cut(s) 243
GlaI GCGC 1 cut(s) 14
GluI GCNGC 3 cut(s) 11, 41, 177
HaeIII GGCC 1 cut(s) 306
HapII CCGG 2 cut(s) 144, 279
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 15
Hin1I GRCGYC 2 cut(s) 83, 157
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HincII GTYRAC 2 cut(s) 91, 155
HindII GTYRAC 2 cut(s) 91, 155
HinfI GANTC 1 cut(s) 140
HpaI GTTAAC 1 cut(s) 91
HpaII CCGG 2 cut(s) 144, 279
Hpy166II GTNNAC 2 cut(s) 91, 155
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 125, 293
Hpy8I GTNNAC 2 cut(s) 91, 155
Hpy99I CGWCG 3 cut(s) 131, 159, 162
HpyAV CCTTC 2 cut(s) 46, 282
HpyCH4III ACNGT 2 cut(s) 95, 122
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 176
HpySE526I ACGT 1 cut(s) 157
Hsp92I GRCGYC 2 cut(s) 83, 157
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 1 cut(s) 13
KspAI GTTAAC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 289
LpnPI CCDG 5 cut(s) 99, 157, 246, 288, 292
Lsp1109I GCAGC 2 cut(s) 22, 52
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 2 cut(s) 122, 209
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 1 cut(s) 17
MflI RGATCY 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 306
MluNI TGGCCA 1 cut(s) 306
MnlI CCTC 7 cut(s) 25, 28, 91, 142, 175, 181, 195
Mox20I TGGCCA 1 cut(s) 306
MscI TGGCCA 1 cut(s) 306
MseI TTAA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 2 cut(s) 144, 279
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 19, 176
NdeII GATC 1 cut(s) 289
NlaIII CATG 1 cut(s) 197
NmeAIII GCCGAG 1 cut(s) 152
NmuCI GTSAC 2 cut(s) 122, 209
NspI RCATGY 1 cut(s) 197
PciI ACATGT 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 1 cut(s) 140
Pfl23II CGTACG 1 cut(s) 102
PkrI GCNGC 3 cut(s) 12, 42, 178
PscI ACATGT 1 cut(s) 193
PspLI CGTACG 1 cut(s) 102
PspPI GGNCC 1 cut(s) 230
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 2 cut(s) 104, 119
RsaNI GTAC 2 cut(s) 103, 118
SalI GTCGAC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 3 cut(s) 11, 41, 177
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 230
SetI ASST 4 cut(s) 39, 160, 244, 274
SfaNI GCATC 1 cut(s) 157
SgrAI CRCCGGYG 1 cut(s) 278
SinI GGWCC 1 cut(s) 230
SsiI CCGC 4 cut(s) 43, 108, 176, 179
SspMI CTAG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 95, 122
TaiI ACGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 154
TaqII GACCGA 1 cut(s) 300
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseFI GTSAC 2 cut(s) 122, 209
TseI GCWGC 2 cut(s) 10, 40
Tsp45I GTSAC 2 cut(s) 122, 209
VpaK11BI GGWCC 1 cut(s) 230
XceI RCATGY 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 154
XspI CTAG 1 cut(s) 243
ZraI GACGTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.