Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017167

Physical Location & Seq

Genomic Coordinates Reverse (-)

67133232 .. 67133876

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG460600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAAGAGGAGCGCGAGAAGCAAGTAAGAGAGGAGGTGCAGCGGAAAGAGAAGGAGAAACATGGCGTGATTTCAGATATGAAGCCACTTAACCGTGAGGCATACGGCGGTGGATTGTACGCTAACGAGAAGCATTATTCCGGCGAGGCCGCGGCGGAGGAAAAGCCACGCGTGGGGAGGGCGAGCGACACCCAAAGCGCCGATGGACCTATTGAACCTAGCCCGCCACCCAAGCATAAACCACCACCGTCCACGGGCGACCGAGACCTCGATATAACTGGCCAGACCTATATTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

11.06

Weight (kDa)

5.41

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42290
fragaria_vesca	FvH4_2g37570
malus_domestica	MD15G1003000.v1.1
prunus_persica	Prupe.1G355200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0304161
rosa_multiflora	Rmu_co8059264.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164010
rosa_rugosa	Rorug06G0328100
rosa_samantha	Rh6AG442200 Rh6BG460600 Rh6CG454400 Rh6DG441600
rosa_wichuraiana	Rw6G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	15, 152, 171
AciI	CCGC	6 cut(s)	43, 108, 150, 152, 155, 224
AcoI	YGGCCR	1 cut(s)	280
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	173, 254
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	258
AoxI	GGCC	2 cut(s)	147, 280
ApeKI	GCWGC	1 cut(s)	40
AspLEI	GCGC	2 cut(s)	15, 200
AspS9I	GGNCC	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	3 cut(s)	41, 150, 153
BlsI	GCNGC	3 cut(s)	42, 151, 154
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	150, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 254
Bse1I	ACTGG	1 cut(s)	283
BseDI	CCNNGG	2 cut(s)	150, 252
BseLI	CCNNNNNNNGG	2 cut(s)	173, 254
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	23, 47
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	59
Bsh1236I	CGCG	3 cut(s)	15, 152, 171
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	2 cut(s)	149, 282
BsiEI	CGRYCG	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	173, 254
BsmAI	GTCTC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	149, 282
Bso31I	GGTCTC	1 cut(s)	258
BspACI	CCGC	6 cut(s)	43, 108, 150, 152, 155, 224
BspANI	GGCC	2 cut(s)	149, 282
BspFNI	CGCG	3 cut(s)	15, 152, 171
BspTNI	GGTCTC	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	150, 252
Bst4CI	ACNGT	2 cut(s)	95, 249
BstC8I	GCNNGC	2 cut(s)	184, 224
BstDSI	CCRYGG	2 cut(s)	150, 252
BstFNI	CGCG	3 cut(s)	15, 152, 171
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	15, 200
BstMAI	GTCTC	1 cut(s)	258
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 232
BstUI	CGCG	3 cut(s)	15, 152, 171
BstV1I	GCAGC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	149, 282
BtgI	CCRYGG	2 cut(s)	150, 252
Cac8I	GCNNGC	2 cut(s)	184, 224
CfoI	GCGC	2 cut(s)	15, 200
Cfr13I	GGNCC	1 cut(s)	206
Cfr42I	CCGCGG	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	5 cut(s)	85, 149, 166, 222, 282
CviKI_1	RGCY	5 cut(s)	85, 149, 166, 222, 282
CviQI	GTAC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	206
FaeI	CATG	1 cut(s)	65
FaiI	YATR	6 cut(s)	63, 80, 103, 237, 275, 291
FatI	CATG	1 cut(s)	61
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	41, 150, 153
Fsp4HI	GCNGC	3 cut(s)	41, 150, 153
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	2 cut(s)	14, 199
GluI	GCNGC	3 cut(s)	41, 150, 153
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	149, 282
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	2 cut(s)	15, 200
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	2 cut(s)	13, 198
HinP1I	GCGC	2 cut(s)	13, 198
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	95, 249
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 232
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	2 cut(s)	13, 198
KspI	CCGCGG	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	3 cut(s)	154, 264, 296
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	219
MboII	GAAGA	1 cut(s)	17
MlsI	TGGCCA	1 cut(s)	282
MluI	ACGCGT	1 cut(s)	169
MluNI	TGGCCA	1 cut(s)	282
MnlI	CCTC	7 cut(s)	25, 28, 91, 139, 151, 171, 278
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	43, 152
MspI	CCGG	1 cut(s)	141
MvnI	CGCG	3 cut(s)	15, 152, 171
MwoI	GCNNNNNNNGC	2 cut(s)	19, 232
NlaIII	CATG	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	42, 151, 154
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SacII	CCGCGG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	3 cut(s)	41, 150, 153
Sau96I	GGNCC	1 cut(s)	206
SetI	ASST	5 cut(s)	39, 211, 220, 270, 290
Sfr303I	CCGCGG	1 cut(s)	153
SgrBI	CCGCGG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	206
SsiI	CCGC	6 cut(s)	43, 108, 150, 152, 155, 224
SspMI	CTAG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	95, 249
TaqI	TCGA	1 cut(s)	270
TaqII	GACCGA	1 cut(s)	276
TauI	GCSGC	2 cut(s)	152, 155
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseI	GCWGC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.