Rroxscaffold_7G00164010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017167
Physical Location & Seq
Reverse (-)
6105239 .. 6105565
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00164010.1

Sequence Viewer

Length: 327 bp
ATGGAAGAGGAGCGCGAGAAGCAAGTAAGAGAGGAGGTGCAGCGGAAAGGGAAGGAGAAACATGGCGTGATTTCAGATATGAAGCCAGTTAACCGTGAGGCATACGGCGGTGGATTGTACGCTAACGAGAAGCATTATTCCGGAGAGGCCGCGGCGGAGGAAAAGCCACACTTGGGGAGGGCGAGCGACACCCAAAGCGCCGATGGACCTGTTGAACCTAGCCCGCCACCCAAGCATAAACCACCACCGTCCACGGGCGACCGAGACCTCGATATAACTGGCCAGACCCTATATTCAGTAGCTGGGCTGTGGGATATTTATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.96

Weight (kDa)

5.35

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42290
fragaria_vesca FvH4_2g37570
malus_domestica MD15G1003000.v1.1
prunus_persica Prupe.1G355200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304161
rosa_multiflora Rmu_co8059264.1_g000001
rosa_roxburghii Rroxscaffold_7G00164010
rosa_rugosa Rorug06G0328100
rosa_samantha Rh6AG442200 Rh6BG460600 Rh6CG454400 Rh6DG441600
rosa_wichuraiana Rw6G038330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 15, 152
AccIII TCCGGA 1 cut(s) 140
AciI CCGC 6 cut(s) 43, 108, 150, 152, 155, 224
AcoI YGGCCR 1 cut(s) 280
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 173, 254
AgsI TTSAA 1 cut(s) 215
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 258
AlwNI CAGNNNCTG 1 cut(s) 302
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 2 cut(s) 147, 280
ApeKI GCWGC 1 cut(s) 40
AspLEI GCGC 2 cut(s) 15, 200
AspS9I GGNCC 1 cut(s) 206
AvaII GGWCC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 282
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 3 cut(s) 41, 150, 153
BlsI GCNGC 3 cut(s) 42, 151, 154
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 150, 252
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 254
Bse1I ACTGG 2 cut(s) 86, 283
BseAI TCCGGA 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 150, 252
BseLI CCNNNNNNNGG 2 cut(s) 173, 254
BseNI ACTGG 2 cut(s) 86, 283
BseRI GAGGAG 2 cut(s) 23, 47
BseXI GCAGC 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 59
Bsh1236I CGCG 2 cut(s) 15, 152
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 2 cut(s) 149, 282
BsiEI CGRYCG 1 cut(s) 262
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 173, 254
BsmAI GTCTC 1 cut(s) 258
BsnI GGCC 2 cut(s) 149, 282
Bso31I GGTCTC 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 140
BspACI CCGC 6 cut(s) 43, 108, 150, 152, 155, 224
BspANI GGCC 2 cut(s) 149, 282
BspEI TCCGGA 1 cut(s) 140
BspFNI CGCG 2 cut(s) 15, 152
BspTNI GGTCTC 1 cut(s) 258
BsrI ACTGG 2 cut(s) 86, 283
BssECI CCNNGG 2 cut(s) 150, 252
Bst4CI ACNGT 2 cut(s) 95, 249
BstC8I GCNNGC 2 cut(s) 184, 224
BstDSI CCRYGG 2 cut(s) 150, 252
BstFNI CGCG 2 cut(s) 15, 152
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 2 cut(s) 15, 200
BstMAI GTCTC 1 cut(s) 258
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 19, 232
BstUI CGCG 2 cut(s) 15, 152
BstV1I GCAGC 1 cut(s) 52
BsuRI GGCC 2 cut(s) 149, 282
BtgI CCRYGG 2 cut(s) 150, 252
Cac8I GCNNGC 2 cut(s) 184, 224
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 2 cut(s) 15, 200
Cfr13I GGNCC 1 cut(s) 206
Cfr42I CCGCGG 1 cut(s) 153
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 62
CviJI RGCY 7 cut(s) 85, 149, 166, 222, 282, 302, 307
CviKI_1 RGCY 7 cut(s) 85, 149, 166, 222, 282, 302, 307
CviQI GTAC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 280
EciI GGCGGA 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 206
FaeI CATG 1 cut(s) 65
FaiI YATR 8 cut(s) 63, 80, 103, 237, 275, 292, 321, 323
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 1 cut(s) 61
FauI CCCGC 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 41, 150, 153
Fsp4HI GCNGC 3 cut(s) 41, 150, 153
FspBI CTAG 1 cut(s) 219
GlaI GCGC 2 cut(s) 14, 199
GluI GCNGC 3 cut(s) 41, 150, 153
GsaI CCCAGC 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 2 cut(s) 149, 282
HapII CCGG 1 cut(s) 141
HhaI GCGC 2 cut(s) 15, 200
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 2 cut(s) 13, 198
HinP1I GCGC 2 cut(s) 13, 198
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HpaI GTTAAC 1 cut(s) 91
HpaII CCGG 1 cut(s) 141
Hpy166II GTNNAC 2 cut(s) 91, 252
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 141
Hpy8I GTNNAC 2 cut(s) 91, 252
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 2 cut(s) 95, 249
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 232
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 2 cut(s) 13, 198
Kpn2I TCCGGA 1 cut(s) 140
KspAI GTTAAC 1 cut(s) 91
KspI CCGCGG 1 cut(s) 153
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 6 cut(s) 99, 154, 222, 264, 288, 296
Lsp1109I GCAGC 1 cut(s) 52
MaeI CTAG 1 cut(s) 219
MboII GAAGA 1 cut(s) 17
MlsI TGGCCA 1 cut(s) 282
MluNI TGGCCA 1 cut(s) 282
MnlI CCTC 7 cut(s) 25, 28, 91, 139, 151, 171, 278
Mox20I TGGCCA 1 cut(s) 282
MroI TCCGGA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 282
MseI TTAA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 282
MspA1I CMGCKG 2 cut(s) 43, 152
MspI CCGG 1 cut(s) 141
MvnI CGCG 2 cut(s) 15, 152
MwoI GCNNNNNNNGC 2 cut(s) 19, 232
NlaIII CATG 1 cut(s) 65
PkrI GCNGC 3 cut(s) 42, 151, 154
PspFI CCCAGC 1 cut(s) 302
PspPI GGNCC 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SacII CCGCGG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 3 cut(s) 41, 150, 153
Sau96I GGNCC 1 cut(s) 206
SetI ASST 5 cut(s) 39, 211, 220, 270, 304
Sfr303I CCGCGG 1 cut(s) 153
SgrBI CCGCGG 1 cut(s) 153
SinI GGWCC 1 cut(s) 206
SsiI CCGC 6 cut(s) 43, 108, 150, 152, 155, 224
SspMI CTAG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 95, 249
TaqI TCGA 1 cut(s) 270
TaqII GACCGA 1 cut(s) 276
TauI GCSGC 2 cut(s) 152, 155
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.