Prupe.1G355200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017167
Physical Location & Seq
Reverse (-)
32981772 .. 32982047
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G355200.1

Sequence Viewer

Length: 276 bp
ATGGATGACGATCATCATCCAAAAGTGAAAGAGGAGAGGGAGAAGCAGAGAAGGGAGGAGGTAAAGCAGAAAGAGAAGGAAGACGGATCAAGGATGAAGCCACTAACATATGAAGCCTACGGTGGTGGAATGTACGGTAGAGACGAGGGTGAAACTGAAATAGCGGCAAAACCAAAAGCAAATAAGCCACTGGCCAGAGAGACGCAGAGTGCTGATGGACCTGATGAAGCCACTACGGGACCCTCCCAAGCATCCACCCCCACCTTCCACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.24

Weight (kDa)

5.64

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42290
fragaria_vesca FvH4_2g37570
malus_domestica MD15G1003000.v1.1
prunus_persica Prupe.1G355200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304161
rosa_multiflora Rmu_co8059264.1_g000001
rosa_roxburghii Rroxscaffold_7G00164010
rosa_rugosa Rorug06G0328100
rosa_samantha Rh6AG442200 Rh6BG460600 Rh6CG454400 Rh6DG441600
rosa_wichuraiana Rw6G038330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 164
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 192
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 270
AgeI ACCGGT 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 135, 194
AlwI GGATC 1 cut(s) 94
AoxI GGCC 1 cut(s) 192
AsiGI ACCGGT 1 cut(s) 270
AspS9I GGNCC 2 cut(s) 218, 239
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 2 cut(s) 218, 239
BalI TGGCCA 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 87
BccI CCATC 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 135, 194
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme18I GGWCC 2 cut(s) 218, 239
BmgT120I GGNCC 2 cut(s) 218, 239
BmiI GGNNCC 2 cut(s) 240, 241
BmsI GCATC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 87
BsaBI GATNNNNATC 2 cut(s) 9, 15
BsaWI WCCGGW 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse118I RCCGGY 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 195
Bse8I GATNNNNATC 2 cut(s) 9, 15
BseGI GGATG 4 cut(s) 10, 16, 99, 251
BseJI GATNNNNATC 2 cut(s) 9, 15
BseLI CCNNNNNNNGG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 2 cut(s) 47, 71
BshFI GGCC 1 cut(s) 194
BshTI ACCGGT 1 cut(s) 270
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 2 cut(s) 135, 194
BsmBI CGTCTC 2 cut(s) 135, 194
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 2 cut(s) 10, 86
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 240, 241
BspPI GGATC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 270
BsrI ACTGG 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 270
BssMI GATC 2 cut(s) 10, 86
Bst4CI ACNGT 2 cut(s) 122, 137
BstF5I GGATG 4 cut(s) 10, 16, 99, 251
BstKTI GATC 2 cut(s) 13, 89
BstMAI GTCTC 2 cut(s) 135, 194
BstMBI GATC 2 cut(s) 10, 86
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 4 cut(s) 10, 16, 99, 251
BtsIMutI CAGTG 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 218, 239
CseI GACGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 270
CviJI RGCY 5 cut(s) 100, 116, 187, 194, 230
CviKI_1 RGCY 5 cut(s) 100, 116, 187, 194, 230
CviQI GTAC 1 cut(s) 133
DpnI GATC 2 cut(s) 12, 88
DpnII GATC 2 cut(s) 10, 86
EaeI YGGCCR 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 218, 239
EcoO109I RGGNCCY 1 cut(s) 239
Esp3I CGTCTC 2 cut(s) 135, 194
FaiI YATR 2 cut(s) 109, 111
FaqI GGGAC 1 cut(s) 252
FauNDI CATATG 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 4 cut(s) 3, 17, 106, 238
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 271
HgaI GACGC 1 cut(s) 211
HpaII CCGG 1 cut(s) 271
HphI GGTGA 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 45, 70, 274
HpyCH4III ACNGT 2 cut(s) 122, 137
KflI GGGWCCC 1 cut(s) 239
Kzo9I GATC 2 cut(s) 10, 86
LpnPI CCDG 3 cut(s) 176, 208, 234
LweI GCATC 1 cut(s) 260
MalI GATC 2 cut(s) 12, 88
MboI GATC 2 cut(s) 10, 86
MboII GAAGA 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 194
MnlI CCTC 6 cut(s) 25, 30, 49, 52, 139, 253
Mox20I TGGCCA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 194
MspI CCGG 1 cut(s) 271
NdeI CATATG 1 cut(s) 109
NdeII GATC 2 cut(s) 10, 86
NlaIV GGNNCC 2 cut(s) 240, 241
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PinAI ACCGGT 1 cut(s) 270
PkrI GCNGC 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 240, 241
PspPI GGNCC 2 cut(s) 218, 239
PspPPI RGGWCCY 1 cut(s) 239
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 2 cut(s) 10, 86
Sau96I GGNCC 2 cut(s) 218, 239
SetI ASST 3 cut(s) 63, 223, 266
SfaNI GCATC 1 cut(s) 260
SgeI CNNG 7 cut(s) 102, 157, 203, 207, 233, 249, 260
SgrAI CRCCGGYG 1 cut(s) 270
SinI GGWCC 2 cut(s) 218, 239
SsiI CCGC 1 cut(s) 164
TaaI ACNGT 2 cut(s) 122, 137
TauI GCSGC 1 cut(s) 167
TscAI CASTG 1 cut(s) 195
TspDTI ATGAA 3 cut(s) 110, 126, 240
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 2 cut(s) 218, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.