Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017517

Physical Location & Seq

Genomic Coordinates Reverse (-)

28116547 .. 28117686

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGATACACTGAGAAACTTATGGGCTATCTTGCTTATTTCCATAGCCATTGTTGGTTCACAAGGTAATGCTAAGGTGGAAAATGGCACTGCTACTAGTCAAGCAGGCACTCTTGCTTTTGATCAAGGCAACACAACAGAAGCAAGAAACAAGAGCGCTTCTAACACTACTGAAGTTGTTATCAACAGCAAAAACAAACACTCTTGGATGAATAGAGGAAGAGGTGGAGGAGGCGGCGGTGGTGGTGGAGGAGGAGGTGGTGGTGGTGGTGGTAGAGGTAGTGGAGGCGGTGGAGGCGGTGGAGGAGGAGGCTACTCGTGGAGTTGGGGTGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGTGGTGGTCGAGGACGTGGCGGTGGTGGAGGTAGCGGGTGGGGATGGGGTGGAGGAGGAGGAGGGAGTGGCTGGTGGAAGTGGGGTTGCGGCGGAAACGGAGGAGGAAGAAGGCATCAACATGTGTACCGGGGGACGGGGAGGTTCAGTGAGGATCATTACAAGCTAGGAGAGTTTGCACAATGCATGCGTAAAGGGATGTGTCAAGGGAAGAGATTGGATTGCCCTCTTCACTGTGGAGGACCTTGCTACTACGACTGCCAAGATATGTGCAAGGCTCACTGTCGACGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

21.69

Weight (kDa)

9.77

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75550 AT1G75550
fragaria_vesca	FvH4_2g39010
malus_domestica	MD15G1017600.v1.1
prunus_persica	Prupe.1G370900_v2.0.a1
pyrus_communis	pycom15g01550
rosa_chinensis	RchiOBHm_Chr6g0302111
rosa_laevigata	RLG00000011194
rosa_multiflora	Rmu_ssc0000160.1_g000010
rosa_roxburghii	Rroxscaffold_7G00166070
rosa_rugosa	Rorug06G0312400
rosa_wichuraiana	Rw6G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	655
AccI	GTMKAC	1 cut(s)	649
AciI	CCGC	8 cut(s)	234, 237, 288, 297, 384, 399, 453, 456
AclWI	GGATC	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	652
AfaI	GTAC	1 cut(s)	491
AfeI	AGCGCT	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	499
AflIII	ACRYGT	1 cut(s)	484
AhlI	ACTAGT	1 cut(s)	95
AjiI	CACGTC	1 cut(s)	380
AluBI	AGCT	1 cut(s)	529
AluI	AGCT	1 cut(s)	529
AlwI	GGATC	1 cut(s)	525
Aor51HI	AGCGCT	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	605
AsuC2I	CCSGG	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	605
BaeI	ACNNNNGTAYC	2 cut(s)	473, 506
BauI	CACGAG	1 cut(s)	316
BccI	CCATC	1 cut(s)	402
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	494
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	2 cut(s)	96, 530
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	2 cut(s)	235, 454
BlsI	GCNGC	2 cut(s)	236, 455
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	605
BmgBI	CACGTC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	605
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	487
Bpu10I	CCTNAGC	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	494
BsaHI	GRCGYC	1 cut(s)	652
BsaJI	CCNNGG	1 cut(s)	493
BsaXI	ACNNNNNCTCC	4 cut(s)	313, 343, 496, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	3 cut(s)	213, 413, 567
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseRI	GAGGAG	9 cut(s)	243, 264, 267, 318, 321, 432, 435, 438, 480
BsiSI	CCGG	1 cut(s)	493
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	511
Bsp143I	GATC	2 cut(s)	121, 517
BspACI	CCGC	8 cut(s)	234, 237, 288, 297, 384, 399, 453, 456
BspPI	GGATC	1 cut(s)	525
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	2 cut(s)	121, 517
BssNI	GRCGYC	1 cut(s)	652
BssSI	CACGAG	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	599, 647
Bst6I	CTCTTC	3 cut(s)	214, 569, 597
BstACI	GRCGYC	1 cut(s)	652
BstC8I	GCNNGC	2 cut(s)	106, 551
BstDEI	CTNAG	2 cut(s)	11, 72
BstF5I	GGATG	3 cut(s)	213, 413, 567
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	2 cut(s)	124, 520
BstMBI	GATC	2 cut(s)	121, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNSI	RCATGY	2 cut(s)	488, 553
BstSCI	CCNGG	1 cut(s)	492
BtrI	CACGTC	1 cut(s)	380
BtsCI	GGATG	3 cut(s)	213, 413, 567
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	5 cut(s)	8, 87, 517, 595, 643
Cac8I	GCNNGC	2 cut(s)	106, 551
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	605
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	2 cut(s)	485, 550
CviJI	RGCY	6 cut(s)	26, 47, 312, 435, 529, 641
CviKI_1	RGCY	6 cut(s)	26, 47, 312, 435, 529, 641
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	2 cut(s)	11, 72
DpnI	GATC	2 cut(s)	123, 519
DpnII	GATC	2 cut(s)	121, 517
Eam1104I	CTCTTC	3 cut(s)	214, 569, 597
EarI	CTCTTC	3 cut(s)	214, 569, 597
EciI	GGCGGA	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	605
Eco47III	AGCGCT	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	605
EcoT22I	ATGCAT	1 cut(s)	551
FaeI	CATG	2 cut(s)	488, 553
FaiI	YATR	5 cut(s)	22, 44, 486, 551, 632
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	2 cut(s)	484, 549
FauI	CCCGC	1 cut(s)	392
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	649
Fnu4HI	GCNGC	2 cut(s)	235, 454
FokI	GGATG	3 cut(s)	220, 420, 574
Fsp4HI	GCNGC	2 cut(s)	235, 454
FspBI	CTAG	2 cut(s)	96, 530
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	2 cut(s)	235, 454
HaeII	RGCGCY	1 cut(s)	159
HapII	CCGG	1 cut(s)	493
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	652
Hin1II	CATG	2 cut(s)	488, 553
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	650
HindII	GTYRAC	1 cut(s)	650
HpaII	CCGG	1 cut(s)	493
Hpy166II	GTNNAC	3 cut(s)	59, 490, 650
Hpy8I	GTNNAC	3 cut(s)	59, 490, 650
Hpy99I	CGWCG	2 cut(s)	654, 657
HpyAV	CCTTC	1 cut(s)	468
HpyCH4III	ACNGT	2 cut(s)	599, 647
HpyCH4IV	ACGT	2 cut(s)	379, 652
HpyCH4V	TGCA	3 cut(s)	542, 549, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	2 cut(s)	11, 72
HpySE526I	ACGT	2 cut(s)	379, 652
Hsp92I	GRCGYC	1 cut(s)	652
Hsp92II	CATG	2 cut(s)	488, 553
HspAI	GCGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	121, 517
LpnPI	CCDG	3 cut(s)	90, 421, 506
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	2 cut(s)	96, 530
MaeII	ACGT	2 cut(s)	379, 652
MalI	GATC	2 cut(s)	123, 519
MboI	GATC	2 cut(s)	121, 517
MboII	GAAGA	4 cut(s)	231, 483, 584, 586
Mph1103I	ATGCAT	1 cut(s)	551
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	1 cut(s)	493
MspR9I	CCNGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	1 cut(s)	294
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	2 cut(s)	121, 517
NlaIII	CATG	2 cut(s)	488, 553
NsiI	ATGCAT	1 cut(s)	551
NspI	RCATGY	2 cut(s)	488, 553
PaeI	GCATGC	1 cut(s)	553
PciI	ACATGT	1 cut(s)	484
PkrI	GCNGC	2 cut(s)	236, 455
PpuMI	RGGWCCY	1 cut(s)	605
PscI	ACATGT	1 cut(s)	484
Psp5II	RGGWCCY	1 cut(s)	605
PspPI	GGNCC	1 cut(s)	605
PspPPI	RGGWCCY	1 cut(s)	605
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	483
SalI	GTCGAC	1 cut(s)	648
SatI	GCNGC	2 cut(s)	235, 454
Sau3AI	GATC	2 cut(s)	121, 517
Sau96I	GGNCC	1 cut(s)	605
ScrFI	CCNGG	1 cut(s)	494
SfaNI	GCATC	1 cut(s)	487
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	483
SpeI	ACTAGT	1 cut(s)	95
SphI	GCATGC	1 cut(s)	553
SsiI	CCGC	8 cut(s)	234, 237, 288, 297, 384, 399, 453, 456
SspMI	CTAG	2 cut(s)	96, 530
StyD4I	CCNGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	599, 647
TaiI	ACGT	2 cut(s)	382, 655
TaqI	TCGA	3 cut(s)	373, 649, 655
TauI	GCSGC	2 cut(s)	237, 456
TscAI	CASTG	5 cut(s)	15, 94, 517, 602, 650
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	5 cut(s)	15, 94, 517, 602, 650
VpaK11BI	GGWCC	1 cut(s)	605
XceI	RCATGY	2 cut(s)	488, 553
XmiI	GTMKAC	1 cut(s)	649
XspI	CTAG	2 cut(s)	96, 530
ZraI	GACGTC	1 cut(s)	653
Zsp2I	ATGCAT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.