Prupe.1G370900_v2.0.a1

Glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017517
Physical Location & Seq
Forward (+)
33826923 .. 33828188
1266 bp
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UTR
Exon/CDS
Intron
Prupe.1G370900.1

Sequence Viewer

Length: 738 bp
ATGAGCAGTAACATATACAAGTACGAATTACCGTGCATCGTCGTTGTAGCGACCGTACGTTCTAAACACATGGATACAGTAATACTAGTGAGAAGTTTATGGGTCATCTTGTTTATTTCGATGGCCATTGTTGATTTGAAAGCTGATAATAATACTACTACGTCTCAAGGCAATGCTACTTCTTCTTCATTAGCTGTTGCTGAAATTCCTTCCGGGGGAAATGGACAAGTAAGAAACGAGACTGCTCCTTCTTATACTAATCAAGTTGTTATTAACAACAAAAACAAGCATCAAGGAAGAGGAGGAAGCGGTGGCGGCGGAGGTGGAGGAGGCTACTCATGGGGATGGGGAGGAGGTGGTGGCGGTGGTGGAGGTGGAAGAGGAAGAGGAGGAGGAGGAGGTGGTGGTGGTGGCGGAGGTGGTGGAGGTGGCGGGTGGGGGTGGGGAGGAGGAGGAGGAGGGGCTGGTTGGTGGAAATGGGGTTGTGGTGGTGGTAAAGGAAGAGGAGGAAGAAGTGGATCAAGAAACCATCATCATTATCATCGTGATCATGATCATGTGTACGGAGGGAAGAGGAGGTTTGATGAGGCTGATTATGCGGTGGGGGAGTTTGCACAGTGCATGCGCAAAGGGCGGTGTAAAGGCATGAGATTAGATTGCCCTCTTCACTGCGGAGGGCCTTGCTACTATGACTGCCAATATATGTGCAAGGCTCACTGCAAACGACGTCGTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

25.33

Weight (kDa)

9.65

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75550 AT1G75550
fragaria_vesca FvH4_2g39010
malus_domestica MD15G1017600.v1.1
prunus_persica Prupe.1G370900_v2.0.a1
pyrus_communis pycom15g01550
rosa_chinensis RchiOBHm_Chr6g0302111
rosa_laevigata RLG00000011194
rosa_multiflora Rmu_ssc0000160.1_g000010
rosa_roxburghii Rroxscaffold_7G00166070
rosa_rugosa Rorug06G0312400
rosa_wichuraiana Rw6G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 730
Acc16I TGCGCA 1 cut(s) 626
AciI CCGC 9 cut(s) 309, 315, 318, 363, 414, 432, 599, 634, 672
AclWI GGATC 1 cut(s) 526
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 727
AfaI GTAC 3 cut(s) 23, 57, 563
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 139
AhlI ACTAGT 1 cut(s) 85
AluBI AGCT 2 cut(s) 143, 194
AluI AGCT 2 cut(s) 143, 194
Alw26I GTCTC 2 cut(s) 168, 233
AlwI GGATC 1 cut(s) 526
AoxI GGCC 2 cut(s) 123, 677
ApoI RAATTY 1 cut(s) 204
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 1 cut(s) 677
AsuC2I CCSGG 1 cut(s) 214
BalI TGGCCA 1 cut(s) 125
BccI CCATC 3 cut(s) 115, 339, 537
BciVI GTATCC 1 cut(s) 67
BclI TGATCA 2 cut(s) 547, 553
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 2 cut(s) 168, 233
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 1 cut(s) 86
BfuI GTATCC 1 cut(s) 67
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 677
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 2 cut(s) 45, 298
BpuEI CTTGAG 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 552
BsaHI GRCGYC 1 cut(s) 727
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 178
Bse8I GATNNNNATC 1 cut(s) 552
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 350
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMI GCAATG 1 cut(s) 178
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 125, 679
BsiEI CGRYCG 1 cut(s) 54
BsiSI CCGG 1 cut(s) 213
BsiWI CGTACG 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 2 cut(s) 168, 233
BsmBI CGTCTC 1 cut(s) 168
BsnI GGCC 2 cut(s) 125, 679
Bsp143I GATC 3 cut(s) 518, 547, 553
BspACI CCGC 9 cut(s) 309, 315, 318, 363, 414, 432, 599, 634, 672
BspANI GGCC 2 cut(s) 125, 679
BspHI TCATGA 1 cut(s) 550
BspPI GGATC 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 3 cut(s) 518, 547, 553
BssNI GRCGYC 1 cut(s) 727
Bst4CI ACNGT 4 cut(s) 33, 55, 79, 618
Bst6I CTCTTC 6 cut(s) 292, 373, 379, 496, 566, 669
BstACI GRCGYC 1 cut(s) 727
BstC8I GCNNGC 1 cut(s) 623
BstF5I GGATG 1 cut(s) 350
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 3 cut(s) 521, 550, 556
BstMAI GTCTC 2 cut(s) 168, 233
BstMBI GATC 3 cut(s) 518, 547, 553
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 3 cut(s) 315, 596, 631
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 1 cut(s) 212
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 125, 679
BtsCI GGATG 1 cut(s) 350
BtsI GCAGTG 2 cut(s) 667, 715
BtsIMutI CAGTG 3 cut(s) 623, 667, 715
Cac8I GCNNGC 1 cut(s) 623
CciI TCATGA 1 cut(s) 550
CfoI GCGC 1 cut(s) 627
Cfr13I GGNCC 1 cut(s) 677
Csp6I GTAC 3 cut(s) 22, 56, 562
CviAII CATG 6 cut(s) 70, 339, 551, 557, 622, 646
CviJI RGCY 8 cut(s) 125, 143, 194, 333, 464, 590, 679, 713
CviKI_1 RGCY 8 cut(s) 125, 143, 194, 333, 464, 590, 679, 713
CviQI GTAC 3 cut(s) 22, 56, 562
DpnI GATC 3 cut(s) 520, 549, 555
DpnII GATC 3 cut(s) 518, 547, 553
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 6 cut(s) 292, 373, 379, 496, 566, 669
EarI CTCTTC 6 cut(s) 292, 373, 379, 496, 566, 669
EciI GGCGGA 2 cut(s) 333, 429
EcoO109I RGGNCCY 1 cut(s) 677
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 6 cut(s) 73, 342, 554, 560, 625, 649
FatI CATG 6 cut(s) 69, 338, 550, 556, 621, 645
FauI CCCGC 1 cut(s) 425
FbaI TGATCA 2 cut(s) 547, 553
Fnu4HI GCNGC 1 cut(s) 316
FokI GGATG 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 316
FspBI CTAG 1 cut(s) 86
FspI TGCGCA 1 cut(s) 626
GlaI GCGC 1 cut(s) 626
GluI GCNGC 1 cut(s) 316
HaeIII GGCC 2 cut(s) 125, 679
HapII CCGG 1 cut(s) 213
HhaI GCGC 1 cut(s) 627
Hin1I GRCGYC 1 cut(s) 727
Hin1II CATG 6 cut(s) 73, 342, 554, 560, 625, 649
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HpaII CCGG 1 cut(s) 213
Hpy166II GTNNAC 1 cut(s) 562
Hpy188III TCNNGA 4 cut(s) 522, 545, 551, 735
Hpy8I GTNNAC 1 cut(s) 562
Hpy99I CGWCG 3 cut(s) 44, 729, 732
HpyAV CCTTC 2 cut(s) 219, 258
HpyCH4III ACNGT 4 cut(s) 33, 55, 79, 618
HpyCH4IV ACGT 3 cut(s) 58, 161, 727
HpyCH4V TGCA 5 cut(s) 36, 614, 621, 708, 720
HpyF10VI GCNNNNNNNGC 3 cut(s) 315, 596, 631
HpySE526I ACGT 3 cut(s) 58, 161, 727
Hsp92I GRCGYC 1 cut(s) 727
Hsp92II CATG 6 cut(s) 73, 342, 554, 560, 625, 649
HspAI GCGC 1 cut(s) 625
Ksp22I TGATCA 2 cut(s) 547, 553
Kzo9I GATC 3 cut(s) 518, 547, 553
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 2 cut(s) 226, 450
LweI GCATC 2 cut(s) 45, 298
MaeI CTAG 1 cut(s) 86
MaeII ACGT 3 cut(s) 58, 161, 727
MaeIII GTNAC 1 cut(s) 8
MalI GATC 3 cut(s) 520, 549, 555
MboI GATC 3 cut(s) 518, 547, 553
MboII GAAGA 9 cut(s) 174, 177, 309, 390, 396, 513, 522, 583, 656
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 2 cut(s) 26, 204
MluNI TGGCCA 1 cut(s) 125
Mox20I TGGCCA 1 cut(s) 125
MscI TGGCCA 1 cut(s) 125
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 2 cut(s) 343, 555
Msp20I TGGCCA 1 cut(s) 125
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 315, 596, 631
NciI CCSGG 1 cut(s) 214
NdeII GATC 3 cut(s) 518, 547, 553
NlaIII CATG 6 cut(s) 73, 342, 554, 560, 625, 649
NsbI TGCGCA 1 cut(s) 626
NspI RCATGY 1 cut(s) 625
PaeI GCATGC 1 cut(s) 625
PagI TCATGA 1 cut(s) 550
Pfl23II CGTACG 1 cut(s) 55
PkrI GCNGC 1 cut(s) 317
PspLI CGTACG 1 cut(s) 55
PspPI GGNCC 1 cut(s) 677
RsaI GTAC 3 cut(s) 23, 57, 563
RsaNI GTAC 3 cut(s) 22, 56, 562
RseI CAYNNNNRTG 2 cut(s) 343, 555
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 316
Sau3AI GATC 3 cut(s) 518, 547, 553
Sau96I GGNCC 1 cut(s) 677
ScrFI CCNGG 1 cut(s) 214
SfaNI GCATC 2 cut(s) 45, 298
SmiMI CAYNNNNRTG 2 cut(s) 343, 555
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
SpeI ACTAGT 1 cut(s) 85
SphI GCATGC 1 cut(s) 625
Sse9I AATT 2 cut(s) 26, 204
SsiI CCGC 9 cut(s) 309, 315, 318, 363, 414, 432, 599, 634, 672
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 212
TaaI ACNGT 4 cut(s) 33, 55, 79, 618
TaiI ACGT 3 cut(s) 61, 164, 730
TaqI TCGA 1 cut(s) 119
TasI AATT 2 cut(s) 26, 204
TauI GCSGC 1 cut(s) 318
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 3 cut(s) 623, 674, 722
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 3 cut(s) 623, 674, 722
XapI RAATTY 1 cut(s) 204
XceI RCATGY 1 cut(s) 625
XspI CTAG 1 cut(s) 86
ZraI GACGTC 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.