Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0018389

Physical Location & Seq

Genomic Coordinates Forward (+)

28752312 .. 28753656

Gene Structure 1345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCTAGATCTAACAATGTTCGTGGAGTTTGTTCCCCTTGGCTCAAAGATGAGTCTGCGCACCAAAATCAAGCCATTGTTGTCTCTTTGGCGTCATTTACTTATTTGCACATTGCTTTTCACTTCCCTCCCCGTCGCTACGGCTTCATCAGATGATTACACATCCTTAGTTTTCAATGGATGTTCAAAGAACATGTTCCCAAACAATGTCTACCTGGAAAACCTTAAACCCCTCACGGACTCATTGGTCTCAAACTCTGCACAAAAGGCTTTCTTTGCCGCCACAGCCACCTCTAGCGATGGCACTAACAGCATTAACGGTCTTTACCAATGCCGCGGAGACCTCTCCCCCGCCGAGTGCAACACCTGCGTGAGCAAAATTCCGCCTCTAGTCACCCAACTATGTGGACAAACCAACGTAGCAGCCCGAGTCCAGCTCCGCGGCTGCTACTTGCGTTATGAGACTGCTGATTCAAAGCCATTTGATGCAACAGAATTTCTCTTTAAACGTTGCGACGTTTATCAAGCAAAGGTGGGTGGGCTTGGGGTTAAAAGGGACACAGCTTTCGGCATATTGGAAAACAATGTCAAGAATAGCACTAGTAATGGAGTTGGTACCGGTGGCTTCTACACAGGTAGCTATGACACGGTGGGTGTTTCAGGGCAATGCGAAGGTTCCTTGGCGAACCAGGATTGCGTGGCCTGCTTGCAAAGTGCTTCTCAGAAGGCCAAGACCGAGTGCGGAGATTCTATTTCAGGGCAGATTTATCTCTACAAGTGCTACATTGGCTACAACACCTCCTCGAATGGCAATGCCAATGCTGTGCCATATTCACGTAAAGTCGATGCAGGCTCTGGGAATAATAATCCAGTAACGAAGAAAGTGGCAATTTCTTTGGGAGCTATTGGATGTTTTTTGCTGGTTGTTAGTATCGGCGGGGTGATCTATAACTCTATAAGGAGTGCAAAAGACACCGCTAGGATAGTATTAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0016020 GO:0016032 GO:0030054 GO:0030312 GO:0040011 GO:0044000 GO:0044403 GO:0044419 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0071944 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

332

Amino Acids

35.35

Weight (kDa)

8.58

Isoelectric Point (pI)

28.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	61 - 155	1.7e-16	Salt stress response/antifungal
Stress-antifung	PF01657	205 - 266	2.5e-07	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018389)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40340
rosa_chinensis	RchiOBHm_Chr6g0300411
rosa_laevigata	RLG00000011340
rosa_multiflora	Rmu_sc0001670.1_g000006
rosa_rugosa	Rorug06G0295800
rosa_samantha	Rh6AG408500 Rh6BG415800 Rh6CG423200 Rh6DG408800
rosa_wichuraiana	Rw6G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	374
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc16I	TGCGCA	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	374
Acc65I	GGTACC	1 cut(s)	614
AccB1I	GGYRCC	1 cut(s)	614
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	2 cut(s)	336, 441
AclI	AACGTT	1 cut(s)	508
AcsI	RAATTY	2 cut(s)	378, 494
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	1 cut(s)	616
AflIII	ACRYGT	1 cut(s)	192
AgeI	ACCGGT	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	175, 186, 474
AhlI	ACTAGT	1 cut(s)	599
AjnI	CCWGG	2 cut(s)	213, 687
AleI	CACNNNNGTG	1 cut(s)	368
AluBI	AGCT	4 cut(s)	436, 563, 639, 902
AluI	AGCT	4 cut(s)	436, 563, 639, 902
Alw26I	GTCTC	4 cut(s)	87, 253, 333, 455
AlwNI	CAGNNNCTG	1 cut(s)	854
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	2 cut(s)	699, 726
ApeKI	GCWGC	2 cut(s)	422, 444
ApoI	RAATTY	2 cut(s)	378, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
AsiGI	ACCGGT	1 cut(s)	617
Asp700I	GAANNNNTTC	1 cut(s)	194
Asp718I	GGTACC	1 cut(s)	614
AspLEI	GCGC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	385, 952
AvaI	CYCGRG	1 cut(s)	426
BanI	GGYRCC	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	431, 434
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	2 cut(s)	215, 689
BcoDI	GTCTC	4 cut(s)	87, 253, 333, 455
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	5 cut(s)	5, 294, 389, 600, 978
BfuAI	ACCTGC	1 cut(s)	374
BglII	AGATCT	1 cut(s)	7
BisI	GCNGC	5 cut(s)	279, 334, 423, 442, 445
BlsI	GCNGC	5 cut(s)	280, 335, 424, 443, 446
Bme1390I	CCNGG	2 cut(s)	215, 689
BmeT110I	CYCGRG	1 cut(s)	426
BmiI	GGNNCC	2 cut(s)	616, 676
BmrFI	CCNGG	2 cut(s)	215, 689
BmsI	GCATC	2 cut(s)	475, 835
BplI	GAGNNNNNCTC	2 cut(s)	420, 452
BsaAI	YACGTR	1 cut(s)	836
BsaHI	GRCGYC	1 cut(s)	91
BsaI	GGTCTC	2 cut(s)	253, 333
BsaJI	CCNNGG	4 cut(s)	37, 334, 439, 678
BsaWI	WCCGGW	1 cut(s)	617
BsaXI	ACNNNNNCTCC	2 cut(s)	782, 812
Bse118I	RCCGGY	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	869
Bse3DI	GCAATG	3 cut(s)	110, 671, 817
BseBI	CCWGG	2 cut(s)	215, 689
BseDI	CCNNGG	4 cut(s)	37, 334, 439, 678
BseGI	GGATG	3 cut(s)	161, 185, 914
BseMI	GCAATG	3 cut(s)	110, 671, 817
BseMII	CTCAG	1 cut(s)	734
BseNI	ACTGG	1 cut(s)	869
BseRI	GAGGAG	1 cut(s)	790
BseXI	GCAGC	2 cut(s)	431, 434
BsgI	GTGCAG	1 cut(s)	243
Bsh1236I	CGCG	2 cut(s)	336, 441
BshFI	GGCC	2 cut(s)	701, 728
BshNI	GGYRCC	1 cut(s)	614
BshTI	ACCGGT	1 cut(s)	617
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	618
BslFI	GGGAC	1 cut(s)	569
BsmAI	GTCTC	4 cut(s)	87, 253, 333, 455
BsmFI	GGGAC	1 cut(s)	569
BsnI	GGCC	2 cut(s)	701, 728
Bso31I	GGTCTC	2 cut(s)	253, 333
BsoBI	CYCGRG	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	7, 942
BspANI	GGCC	2 cut(s)	701, 728
BspCNI	CTCAG	1 cut(s)	733
BspFNI	CGCG	2 cut(s)	336, 441
BspLI	GGNNCC	2 cut(s)	616, 676
BspMI	ACCTGC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	2 cut(s)	253, 333
BsrDI	GCAATG	3 cut(s)	110, 671, 817
BsrFI	RCCGGY	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	869
BssAI	RCCGGY	1 cut(s)	617
BssECI	CCNNGG	4 cut(s)	37, 334, 439, 678
BssMI	GATC	2 cut(s)	7, 942
BssNI	GRCGYC	1 cut(s)	91
BssT1I	CCWWGG	2 cut(s)	37, 678
Bst2UI	CCWGG	2 cut(s)	215, 689
Bst4CI	ACNGT	2 cut(s)	320, 649
BstACI	GRCGYC	1 cut(s)	91
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	836
BstC8I	GCNNGC	3 cut(s)	703, 707, 850
BstDEI	CTNAG	2 cut(s)	166, 720
BstDSI	CCRYGG	2 cut(s)	334, 439
BstF5I	GGATG	3 cut(s)	161, 185, 914
BstFNI	CGCG	2 cut(s)	336, 441
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	10, 945
BstMAI	GTCTC	4 cut(s)	87, 253, 333, 455
BstMBI	GATC	2 cut(s)	7, 942
BstMWI	GCNNNNNNNGC	7 cut(s)	266, 275, 284, 309, 366, 702, 786
BstNI	CCWGG	2 cut(s)	215, 689
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	213, 687
BstUI	CGCG	2 cut(s)	336, 441
BstV1I	GCAGC	2 cut(s)	431, 434
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	701, 728
BtgI	CCRYGG	2 cut(s)	334, 439
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	3 cut(s)	161, 185, 914
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	3 cut(s)	703, 707, 850
CaiI	CAGNNNCTG	1 cut(s)	854
CfoI	GCGC	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	617
Cfr42I	CCGCGG	2 cut(s)	337, 442
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	615
CspAI	ACCGGT	1 cut(s)	617
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	2 cut(s)	166, 720
DpnI	GATC	2 cut(s)	9, 944
DpnII	GATC	2 cut(s)	7, 942
DraI	TTTAAA	1 cut(s)	505
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	37, 678
Eco31I	GGTCTC	2 cut(s)	253, 333
Eco88I	CYCGRG	1 cut(s)	426
EcoRII	CCWGG	2 cut(s)	213, 687
EcoT14I	CCWWGG	2 cut(s)	37, 678
ErhI	CCWWGG	2 cut(s)	37, 678
FaeI	CATG	1 cut(s)	196
FaiI	YATR	8 cut(s)	194, 403, 459, 572, 642, 829, 948, 956
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	1 cut(s)	192
FauI	CCCGC	2 cut(s)	358, 929
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	279, 334, 423, 442, 445
FokI	GGATG	3 cut(s)	148, 192, 921
Fsp4HI	GCNGC	5 cut(s)	279, 334, 423, 442, 445
FspBI	CTAG	5 cut(s)	5, 294, 389, 600, 978
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	5 cut(s)	279, 334, 423, 442, 445
HaeIII	GGCC	2 cut(s)	701, 728
HapII	CCGG	1 cut(s)	618
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	60
Hin1I	GRCGYC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	5 cut(s)	52, 239, 429, 470, 746
HpaII	CCGG	1 cut(s)	618
HphI	GGTGA	2 cut(s)	385, 952
Hpy166II	GTNNAC	2 cut(s)	211, 407
Hpy188I	TCNGA	2 cut(s)	151, 723
Hpy188III	TCNNGA	1 cut(s)	589
Hpy8I	GTNNAC	2 cut(s)	211, 407
Hpy99I	CGWCG	2 cut(s)	137, 518
HpyAV	CCTTC	2 cut(s)	665, 718
HpyCH4III	ACNGT	2 cut(s)	320, 649
HpyCH4IV	ACGT	4 cut(s)	417, 508, 516, 835
HpyCH4V	TGCA	7 cut(s)	108, 260, 360, 488, 709, 848, 965
HpyF10VI	GCNNNNNNNGC	7 cut(s)	266, 275, 284, 309, 366, 702, 786
HpyF3I	CTNAG	2 cut(s)	166, 720
HpySE526I	ACGT	4 cut(s)	417, 508, 516, 835
Hsp92I	GRCGYC	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	1 cut(s)	58
KpnI	GGTACC	1 cut(s)	618
KspI	CCGCGG	2 cut(s)	337, 442
Kzo9I	GATC	2 cut(s)	7, 942
LmnI	GCTCC	2 cut(s)	441, 899
Lsp1109I	GCAGC	2 cut(s)	431, 434
LweI	GCATC	2 cut(s)	475, 835
MaeI	CTAG	5 cut(s)	5, 294, 389, 600, 978
MaeII	ACGT	4 cut(s)	417, 508, 516, 835
MaeIII	GTNAC	2 cut(s)	391, 871
MalI	GATC	2 cut(s)	9, 944
MboI	GATC	2 cut(s)	7, 942
MboII	GAAGA	1 cut(s)	889
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	3 cut(s)	378, 494, 888
MlyI	GAGTC	3 cut(s)	61, 233, 438
MnlI	CCTC	7 cut(s)	137, 242, 301, 353, 396, 808, 811
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	5 cut(s)	225, 315, 504, 549, 994
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	2 cut(s)	336, 441
MspI	CCGG	1 cut(s)	618
MspR9I	CCNGG	2 cut(s)	215, 689
MvaI	CCWGG	2 cut(s)	215, 689
MvnI	CGCG	2 cut(s)	336, 441
MwoI	GCNNNNNNNGC	7 cut(s)	266, 275, 284, 309, 366, 702, 786
NdeII	GATC	2 cut(s)	7, 942
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	2 cut(s)	616, 676
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	391
NsbI	TGCGCA	1 cut(s)	59
NspI	RCATGY	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	368
PaqCI	CACCTGC	1 cut(s)	374
PciI	ACATGT	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	470, 746
PinAI	ACCGGT	1 cut(s)	617
PkrI	GCNGC	5 cut(s)	280, 335, 424, 443, 446
PleI	GAGTC	3 cut(s)	60, 233, 437
PpsI	GAGTC	3 cut(s)	60, 233, 437
Ppu21I	YACGTR	1 cut(s)	836
PscI	ACATGT	1 cut(s)	192
Psp1406I	AACGTT	1 cut(s)	508
Psp6I	CCWGG	2 cut(s)	213, 687
PspGI	CCWGG	2 cut(s)	213, 687
PspN4I	GGNNCC	2 cut(s)	616, 676
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
RseI	CAYNNNNRTG	1 cut(s)	368
SacII	CCGCGG	2 cut(s)	337, 442
SaqAI	TTAA	5 cut(s)	225, 315, 504, 549, 994
SatI	GCNGC	5 cut(s)	279, 334, 423, 442, 445
Sau3AI	GATC	2 cut(s)	7, 942
SchI	GAGTC	3 cut(s)	61, 233, 438
ScrFI	CCNGG	2 cut(s)	215, 689
SfaNI	GCATC	2 cut(s)	475, 835
Sfr303I	CCGCGG	2 cut(s)	337, 442
SgrBI	CCGCGG	2 cut(s)	337, 442
SmiMI	CAYNNNNRTG	1 cut(s)	368
SpeI	ACTAGT	1 cut(s)	599
Sse9I	AATT	3 cut(s)	378, 494, 888
SspMI	CTAG	5 cut(s)	5, 294, 389, 600, 978
StyD4I	CCNGG	2 cut(s)	213, 687
StyI	CCWWGG	2 cut(s)	37, 678
TaaI	ACNGT	2 cut(s)	320, 649
TaiI	ACGT	4 cut(s)	420, 511, 519, 838
TaqI	TCGA	2 cut(s)	803, 843
TaqII	GACCGA	1 cut(s)	749
TasI	AATT	3 cut(s)	378, 494, 888
TauI	GCSGC	3 cut(s)	281, 336, 444
TfiI	GAWTC	2 cut(s)	470, 746
Tru1I	TTAA	5 cut(s)	225, 315, 504, 549, 994
Tru9I	TTAA	5 cut(s)	225, 315, 504, 549, 994
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	2 cut(s)	422, 444
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	251
XapI	RAATTY	2 cut(s)	378, 494
XceI	RCATGY	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	5 cut(s)	5, 294, 389, 600, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.