RLG00000011340

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018389
Physical Location & Seq
Forward (+)
8692147 .. 8692916
770 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011340

Sequence Viewer

Length: 663 bp
ATGTTCCCAAACAATGTCTACCCGGAAAACCTCAAACCCGTCACGAACTCATTGGTCTCAAACTCTTCACTTGAGACTTTCTTGGCAGCCACAGCCACCTCTGGCGATGGCACTAACGGCATTAACGTCGGAGTCCAGCTCCGCGGGTGCTACTTACGTTATGAGATTGCTGACTCAAAGCCATTTGATGCAACAGAATTTCTTTTCAAACGTTGTGAAGTTAATCAAGCAAGGGCTGCTGGGCTTGGCGAGAAAAGGGACACGGCTTTCGGCATATTGGAAAACGATGTCAAGAATAGTACTGGTGGAGTTGGTGGCTTCTACACCGGTGGCTATGACACAGTGAATGCTTCAGGACAATGCGAAGGTACCTTAGTGAACCAGGATTGTGTGGCTTGCCTGCAAAGTGCTTCTCAGAAGGCCAAGACCGAGTGTGGCGATTCCGTTACGAGGCAGATTTATCTCTACAAGTGCTCCATTAGCTACAAGTCTACAAACTCCTCGAATGCCAATGCCAATGGTGTGCCATATTCGCGTAAAGTCGGTGCAGGATCTGGGAATCATCCAGCAGAGATGGTAGTGGCTATTTTGGCGGGAAGTATTCTCGGTTTGATATTATTAGGTGCTGTTGTCATTTACATTATAAAAGAGTGCAGATCATGA

Protein Analysis

221

Amino Acids

23.22

Weight (kDa)

6.57

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 107 - 164 5.4e-07 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40340
rosa_chinensis RchiOBHm_Chr6g0300411
rosa_laevigata RLG00000011340
rosa_multiflora Rmu_sc0001670.1_g000006
rosa_rugosa Rorug06G0295800
rosa_samantha Rh6AG408500 Rh6BG415800 Rh6CG423200 Rh6DG408800
rosa_wichuraiana Rw6G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 644
Acc65I GGTACC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 368
AccI GTMKAC 2 cut(s) 18, 491
AccII CGCG 2 cut(s) 144, 535
AciI CCGC 3 cut(s) 142, 144, 593
AclI AACGTT 1 cut(s) 211
AclWI GGATC 1 cut(s) 559
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 2 cut(s) 301, 370
AfiI CCNNNNNNNGG 1 cut(s) 450
AgeI ACCGGT 1 cut(s) 326
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 2 cut(s) 139, 483
AluI AGCT 2 cut(s) 139, 483
Alw21I GWGCWC 1 cut(s) 476
Alw26I GTCTC 2 cut(s) 61, 68
AlwI GGATC 1 cut(s) 559
AlwNI CAGNNNCTG 1 cut(s) 554
AoxI GGCC 1 cut(s) 420
ApeKI GCWGC 2 cut(s) 86, 236
ApoI RAATTY 1 cut(s) 197
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AsiGI ACCGGT 1 cut(s) 326
Asp718I GGTACC 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 23
BaeI ACNNNNGTAYC 2 cut(s) 360, 393
BanI GGYRCC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 2 cut(s) 98, 223
BccI CCATC 2 cut(s) 101, 568
BceAI ACGGC 2 cut(s) 133, 279
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 61, 68
BisI GCNGC 2 cut(s) 87, 237
BlsI GCNGC 2 cut(s) 88, 238
BmcAI AGTACT 1 cut(s) 301
Bme1390I CCNGG 2 cut(s) 23, 383
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 2 cut(s) 23, 383
BmsI GCATC 1 cut(s) 178
BplI GAGNNNNNCTC 2 cut(s) 123, 155
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 142
BsaWI WCCGGW 1 cut(s) 326
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 450
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 562
BseLI CCNNNNNNNGG 1 cut(s) 450
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 490
BseXI GCAGC 2 cut(s) 98, 223
BseYI CCCAGC 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 567
Bsh1236I CGCG 2 cut(s) 144, 535
BshFI GGCC 1 cut(s) 422
BshNI GGYRCC 1 cut(s) 368
BshTI ACCGGT 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 476
BsiSI CCGG 2 cut(s) 23, 327
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 450
BsmAI GTCTC 2 cut(s) 61, 68
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 2 cut(s) 352, 511
BsnI GGCC 1 cut(s) 422
Bso31I GGTCTC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 476
Bsp143I GATC 2 cut(s) 551, 656
BspACI CCGC 3 cut(s) 142, 144, 593
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 2 cut(s) 144, 535
BspHI TCATGA 1 cut(s) 659
BspLI GGNNCC 1 cut(s) 370
BspPI GGATC 1 cut(s) 559
BspT107I GGYRCC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 1 cut(s) 307
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 551, 656
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 397, 401
BstDEI CTNAG 2 cut(s) 373, 414
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 562
BstFNI CGCG 2 cut(s) 144, 535
BstKTI GATC 2 cut(s) 554, 659
BstMAI GTCTC 2 cut(s) 61, 68
BstMBI GATC 2 cut(s) 551, 656
BstMWI GCNNNNNNNGC 6 cut(s) 92, 117, 236, 480, 532, 590
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 21, 381
BstUI CGCG 2 cut(s) 144, 535
BstV1I GCAGC 2 cut(s) 98, 223
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BsuRI GGCC 1 cut(s) 422
BtgI CCRYGG 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 397, 401
CaiI CAGNNNCTG 1 cut(s) 554
CciI TCATGA 1 cut(s) 659
Cfr10I RCCGGY 1 cut(s) 326
Cfr42I CCGCGG 1 cut(s) 145
Csp6I GTAC 2 cut(s) 300, 369
CspAI ACCGGT 1 cut(s) 326
CviAII CATG 1 cut(s) 660
CviQI GTAC 2 cut(s) 300, 369
DdeI CTNAG 2 cut(s) 373, 414
DpnI GATC 2 cut(s) 553, 658
DpnII GATC 2 cut(s) 551, 656
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 381
FaeI CATG 1 cut(s) 663
FaiI YATR 6 cut(s) 162, 275, 336, 529, 644, 661
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 659
FauI CCCGC 2 cut(s) 137, 586
FblI GTMKAC 2 cut(s) 18, 491
Fnu4HI GCNGC 2 cut(s) 87, 237
FokI GGATG 1 cut(s) 549
Fsp4HI GCNGC 2 cut(s) 87, 237
GluI GCNGC 2 cut(s) 87, 237
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 1 cut(s) 422
HapII CCGG 2 cut(s) 23, 327
Hin1II CATG 1 cut(s) 663
HinfI GANTC 4 cut(s) 132, 173, 440, 559
HpaII CCGG 2 cut(s) 23, 327
Hpy166II GTNNAC 3 cut(s) 19, 379, 492
Hpy188I TCNGA 2 cut(s) 131, 417
Hpy188III TCNNGA 4 cut(s) 43, 292, 354, 660
Hpy8I GTNNAC 3 cut(s) 19, 379, 492
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 359, 412
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 3 cut(s) 126, 157, 211
HpyCH4V TGCA 4 cut(s) 191, 403, 548, 654
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 117, 236, 480, 532, 590
HpyF3I CTNAG 2 cut(s) 373, 414
HpySE526I ACGT 3 cut(s) 126, 157, 211
Hsp92II CATG 1 cut(s) 663
KpnI GGTACC 1 cut(s) 372
KspI CCGCGG 1 cut(s) 145
Kzo9I GATC 2 cut(s) 551, 656
LmnI GCTCC 2 cut(s) 144, 479
Lsp1109I GCAGC 2 cut(s) 98, 223
LweI GCATC 1 cut(s) 178
MaeII ACGT 3 cut(s) 126, 157, 211
MaeIII GTNAC 2 cut(s) 40, 445
MalI GATC 2 cut(s) 553, 658
MboI GATC 2 cut(s) 551, 656
MboII GAAGA 1 cut(s) 57
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 1 cut(s) 197
MlyI GAGTC 2 cut(s) 141, 167
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 4 cut(s) 41, 109, 444, 511
MseI TTAA 2 cut(s) 123, 222
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 2 cut(s) 23, 327
MspR9I CCNGG 2 cut(s) 23, 383
Mva1269I GAATGC 2 cut(s) 352, 511
MvaI CCWGG 1 cut(s) 383
MvnI CGCG 2 cut(s) 144, 535
MwoI GCNNNNNNNGC 6 cut(s) 92, 117, 236, 480, 532, 590
NciI CCSGG 1 cut(s) 23
NdeII GATC 2 cut(s) 551, 656
NlaIII CATG 1 cut(s) 663
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 40
PagI TCATGA 1 cut(s) 659
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 2 cut(s) 352, 511
PfeI GAWTC 2 cut(s) 440, 559
PinAI ACCGGT 1 cut(s) 326
PkrI GCNGC 2 cut(s) 88, 238
PleI GAGTC 2 cut(s) 140, 167
PpsI GAGTC 2 cut(s) 140, 167
PsiI TTATAA 1 cut(s) 644
Psp1406I AACGTT 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 554
PsuI RGATCY 1 cut(s) 551
RsaI GTAC 2 cut(s) 301, 370
RsaNI GTAC 2 cut(s) 300, 369
SacII CCGCGG 1 cut(s) 145
SaqAI TTAA 2 cut(s) 123, 222
SatI GCNGC 2 cut(s) 87, 237
Sau3AI GATC 2 cut(s) 551, 656
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 2 cut(s) 141, 167
ScrFI CCNGG 2 cut(s) 23, 383
SduI GDGCHC 1 cut(s) 476
SfaNI GCATC 1 cut(s) 178
Sfr303I CCGCGG 1 cut(s) 145
SgrAI CRCCGGYG 1 cut(s) 326
SgrBI CCGCGG 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 197
SsiI CCGC 3 cut(s) 142, 144, 593
StyD4I CCNGG 2 cut(s) 21, 381
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 3 cut(s) 129, 160, 214
TaqI TCGA 1 cut(s) 503
TaqII GACCGA 1 cut(s) 443
TasI AATT 1 cut(s) 197
TatI WGTACW 1 cut(s) 299
TfiI GAWTC 2 cut(s) 440, 559
Tru1I TTAA 2 cut(s) 123, 222
Tru9I TTAA 2 cut(s) 123, 222
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 2 cut(s) 86, 236
Tsp45I GTSAC 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 1 cut(s) 348
XapI RAATTY 1 cut(s) 197
XmiI GTMKAC 2 cut(s) 18, 491
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.