Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0018389

Physical Location & Seq

Genomic Coordinates Reverse (-)

64100027 .. 64100977

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG415800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTTAGTACAATTTGTCCGACGTTTCTCAAAGATGAGTTTGCCCACCAAAATCAAGCCATTGCTATTTCTTTGGTGTCATCTACTTATCTGCACATTCCTTTTCACTTCCCTCCCCCTCGCTATGGGCACTGCTTCGGATGATTATACATCCTTGGTTTTCAAAGGGTGTTCAAAACAAATGTTCCCAAACAATGTCTACCCGGAAAACCTCAAACCCCTCATGGACTCGTTGGTCTCAAACTCTTCACTAGAGACTTTCTTGGCAGCCACAGCCACCTCTGGCGATGGCACTAACGGCATTAACGGTCTGTACCAGTGCCGCGGAGACCTCTCCCCCGCCGAGTGCAACACCTGCATAAGAAAGATTCCACCTTTAGTCAGCCAACTCTGTGGAGAAACCAATGTAGCAGTCCGAGTCCAGCTCCGTGGATGCTACTTACGTTATGAGATTGCTGACTCAAAGCCATTTGATGCAACAGAATTTCTTTTCAAACGTTGTGAAGTTAATCAAGCAAGGGCTGCTGGGCTTGGGGAGAAAAGGGACACGGCTTTCGGCATATTGGAAAACGATGTCAAGAATAGTAGTACTGGTGGAGTTGGTGGCTTCTACACCGGTGGCTATGACACAGTGAATGTTTCAGGACAATGCGAAGGTACCTTAGTGAACCAGGATTGTGTGGCTTGCCTGCAAAGTGCTTCTCAGAAGGCCAAGACCGAGTGTGGCGATTCCGTTACGGGGCAGATTTATCTCTACAAGTGCTCCATTAGCTACAAGTCTACAAACTCCTCGAATGCCAATGCCAATGGTGTGCCATATTCGCGTAAGGTCGGTGCAGGCTCTGGGAATCATCCAGCAGAGATGGTAGTGGCTATTTTGGCGGGATGTATTCTCGGTTTGATATTATTAGGTGCTGTTGTCATTTACATTATAAAAGAGTGCAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0016020 GO:0016032 GO:0030054 GO:0030312 GO:0040011 GO:0044000 GO:0044403 GO:0044419 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0071944 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

316

Amino Acids

33.99

Weight (kDa)

8.27

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	57 - 150	3.2e-15	Salt stress response/antifungal
Stress-antifung	PF01657	203 - 260	1.4e-06	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018389)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40340
rosa_chinensis	RchiOBHm_Chr6g0300411
rosa_laevigata	RLG00000011340
rosa_multiflora	Rmu_sc0001670.1_g000006
rosa_rugosa	Rorug06G0295800
rosa_samantha	Rh6AG408500 Rh6BG415800 Rh6CG423200 Rh6DG408800
rosa_wichuraiana	Rw6G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	932
AarI	CACCTGC	1 cut(s)	362
AasI	GACNNNNNNGTC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	362
Acc65I	GGTACC	1 cut(s)	656
AccB1I	GGYRCC	1 cut(s)	656
AccI	GTMKAC	2 cut(s)	198, 779
AccII	CGCG	2 cut(s)	324, 823
AciI	CCGC	4 cut(s)	322, 324, 339, 881
AclI	AACGTT	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	482
AfaI	GTAC	4 cut(s)	9, 314, 589, 658
AfiI	CCNNNNNNNGG	2 cut(s)	124, 738
AgeI	ACCGGT	1 cut(s)	614
AgsI	TTSAA	3 cut(s)	163, 174, 493
AjnI	CCWGG	1 cut(s)	669
AluBI	AGCT	2 cut(s)	424, 771
AluI	AGCT	2 cut(s)	424, 771
Alw21I	GWGCWC	1 cut(s)	764
Alw26I	GTCTC	3 cut(s)	241, 248, 321
AlwNI	CAGNNNCTG	1 cut(s)	842
AoxI	GGCC	1 cut(s)	708
ApeKI	GCWGC	2 cut(s)	266, 521
ApoI	RAATTY	1 cut(s)	482
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AsiGI	ACCGGT	1 cut(s)	614
Asp718I	GGTACC	1 cut(s)	656
AsuC2I	CCSGG	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	131
BaeI	ACNNNNGTAYC	2 cut(s)	648, 681
BanI	GGYRCC	1 cut(s)	656
Bbv12I	GWGCWC	1 cut(s)	764
BbvI	GCAGC	2 cut(s)	278, 508
BccI	CCATC	2 cut(s)	281, 856
BceAI	ACGGC	2 cut(s)	313, 564
BciT130I	CCWGG	1 cut(s)	671
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	3 cut(s)	241, 248, 321
BfaI	CTAG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	362
BisI	GCNGC	3 cut(s)	267, 322, 522
BlsI	GCNGC	3 cut(s)	268, 323, 523
BmcAI	AGTACT	1 cut(s)	589
Bme1390I	CCNGG	2 cut(s)	203, 671
BmiI	GGNNCC	1 cut(s)	658
BmrFI	CCNGG	2 cut(s)	203, 671
BmsI	GCATC	2 cut(s)	422, 463
BplI	GAGNNNNNCTC	2 cut(s)	408, 440
BpuMI	CCSGG	1 cut(s)	203
BsaI	GGTCTC	2 cut(s)	241, 321
BsaJI	CCNNGG	3 cut(s)	153, 322, 427
BsaWI	WCCGGW	1 cut(s)	614
BsaXI	ACNNNNNCTCC	2 cut(s)	746, 776
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 738
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	2 cut(s)	316, 595
Bse3DI	GCAATG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	671
BseDI	CCNNGG	3 cut(s)	153, 322, 427
BseGI	GGATG	5 cut(s)	145, 149, 437, 850, 890
BseLI	CCNNNNNNNGG	2 cut(s)	124, 738
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	716
BseNI	ACTGG	2 cut(s)	316, 595
BseRI	GAGGAG	1 cut(s)	778
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	278, 508
BseYI	CCCAGC	1 cut(s)	524
BsgI	GTGCAG	2 cut(s)	76, 855
Bsh1236I	CGCG	2 cut(s)	324, 823
BshFI	GGCC	1 cut(s)	710
BshNI	GGYRCC	1 cut(s)	656
BshTI	ACCGGT	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	764
BsiSI	CCGG	2 cut(s)	203, 615
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	124, 738
BsmAI	GTCTC	3 cut(s)	241, 248, 321
BsmFI	GGGAC	1 cut(s)	557
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	1 cut(s)	710
Bso31I	GGTCTC	2 cut(s)	241, 321
Bsp1286I	GDGCHC	2 cut(s)	131, 764
Bsp143I	GATC	1 cut(s)	944
BspACI	CCGC	4 cut(s)	322, 324, 339, 881
BspANI	GGCC	1 cut(s)	710
BspCNI	CTCAG	1 cut(s)	715
BspFNI	CGCG	2 cut(s)	324, 823
BspHI	TCATGA	1 cut(s)	947
BspLI	GGNNCC	1 cut(s)	658
BspMI	ACCTGC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	656
BspTNI	GGTCTC	2 cut(s)	241, 321
BsrDI	GCAATG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	2 cut(s)	316, 595
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	3 cut(s)	153, 322, 427
BssMI	GATC	1 cut(s)	944
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	2 cut(s)	308, 631
Bst6I	CTCTTC	1 cut(s)	250
BstAPI	GCANNNNNTGC	2 cut(s)	354, 521
BstC8I	GCNNGC	3 cut(s)	685, 689, 838
BstDEI	CTNAG	2 cut(s)	661, 702
BstDSI	CCRYGG	2 cut(s)	322, 427
BstF5I	GGATG	5 cut(s)	145, 149, 437, 850, 890
BstFNI	CGCG	2 cut(s)	324, 823
BstKTI	GATC	1 cut(s)	947
BstMAI	GTCTC	3 cut(s)	241, 248, 321
BstMBI	GATC	1 cut(s)	944
BstMWI	GCNNNNNNNGC	7 cut(s)	272, 297, 354, 521, 768, 820, 878
BstNI	CCWGG	1 cut(s)	671
BstSCI	CCNGG	2 cut(s)	201, 669
BstSLI	GKGCMC	1 cut(s)	131
BstUI	CGCG	2 cut(s)	324, 823
BstV1I	GCAGC	2 cut(s)	278, 508
BstXI	CCANNNNNNTGG	2 cut(s)	392, 428
BsuRI	GGCC	1 cut(s)	710
BtgI	CCRYGG	2 cut(s)	322, 427
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	5 cut(s)	145, 149, 437, 850, 890
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	3 cut(s)	129, 323, 636
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	3 cut(s)	685, 689, 838
CaiI	CAGNNNCTG	1 cut(s)	842
CciI	TCATGA	1 cut(s)	947
Cfr10I	RCCGGY	1 cut(s)	614
Cfr42I	CCGCGG	1 cut(s)	325
Csp6I	GTAC	4 cut(s)	8, 313, 588, 657
CspAI	ACCGGT	1 cut(s)	614
CviAII	CATG	2 cut(s)	223, 948
CviQI	GTAC	4 cut(s)	8, 313, 588, 657
DdeI	CTNAG	2 cut(s)	661, 702
DpnI	GATC	1 cut(s)	946
DpnII	GATC	1 cut(s)	944
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	153
Eco31I	GGTCTC	2 cut(s)	241, 321
EcoRII	CCWGG	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	226, 951
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	2 cut(s)	222, 947
FauI	CCCGC	2 cut(s)	346, 874
FblI	GTMKAC	2 cut(s)	198, 779
Fnu4HI	GCNGC	3 cut(s)	267, 322, 522
FokI	GGATG	5 cut(s)	136, 152, 444, 837, 897
Fsp4HI	GCNGC	3 cut(s)	267, 322, 522
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	3 cut(s)	267, 322, 522
GsaI	CCCAGC	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	710
HapII	CCGG	2 cut(s)	203, 615
Hin1II	CATG	2 cut(s)	226, 951
HinfI	GANTC	6 cut(s)	227, 367, 417, 458, 728, 847
HpaII	CCGG	2 cut(s)	203, 615
Hpy166II	GTNNAC	3 cut(s)	199, 667, 780
Hpy188I	TCNGA	4 cut(s)	20, 139, 416, 705
Hpy188III	TCNNGA	3 cut(s)	577, 642, 948
Hpy8I	GTNNAC	3 cut(s)	199, 667, 780
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	647, 700
HpyCH4III	ACNGT	2 cut(s)	308, 631
HpyCH4IV	ACGT	3 cut(s)	22, 442, 496
HpyCH4V	TGCA	7 cut(s)	93, 348, 357, 476, 691, 836, 942
HpyF10VI	GCNNNNNNNGC	7 cut(s)	272, 297, 354, 521, 768, 820, 878
HpyF3I	CTNAG	2 cut(s)	661, 702
HpySE526I	ACGT	3 cut(s)	22, 442, 496
Hsp92II	CATG	2 cut(s)	226, 951
KpnI	GGTACC	1 cut(s)	660
KspI	CCGCGG	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	944
LmnI	GCTCC	2 cut(s)	429, 767
Lsp1109I	GCAGC	2 cut(s)	278, 508
LweI	GCATC	2 cut(s)	422, 463
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	3 cut(s)	22, 442, 496
MaeIII	GTNAC	1 cut(s)	733
MalI	GATC	1 cut(s)	946
MboI	GATC	1 cut(s)	944
MboII	GAAGA	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	131, 764
MluCI	AATT	2 cut(s)	11, 482
MlyI	GAGTC	3 cut(s)	221, 426, 452
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	7 cut(s)	122, 128, 221, 230, 289, 341, 799
MseI	TTAA	2 cut(s)	303, 507
MspA1I	CMGCKG	1 cut(s)	324
MspI	CCGG	2 cut(s)	203, 615
MspR9I	CCNGG	2 cut(s)	203, 671
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	1 cut(s)	671
MvnI	CGCG	2 cut(s)	324, 823
MwoI	GCNNNNNNNGC	7 cut(s)	272, 297, 354, 521, 768, 820, 878
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	1 cut(s)	944
NlaIII	CATG	2 cut(s)	226, 951
NlaIV	GGNNCC	1 cut(s)	658
NmeAIII	GCCGAG	1 cut(s)	367
PagI	TCATGA	1 cut(s)	947
PaqCI	CACCTGC	1 cut(s)	362
PctI	GAATGC	1 cut(s)	799
PfeI	GAWTC	3 cut(s)	367, 728, 847
PinAI	ACCGGT	1 cut(s)	614
PkrI	GCNGC	3 cut(s)	268, 323, 523
PleI	GAGTC	3 cut(s)	221, 425, 452
PpsI	GAGTC	3 cut(s)	221, 425, 452
PsiI	TTATAA	1 cut(s)	932
Psp1406I	AACGTT	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	669
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	842
RsaI	GTAC	4 cut(s)	9, 314, 589, 658
RsaNI	GTAC	4 cut(s)	8, 313, 588, 657
SacII	CCGCGG	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	303, 507
SatI	GCNGC	3 cut(s)	267, 322, 522
Sau3AI	GATC	1 cut(s)	944
ScaI	AGTACT	1 cut(s)	589
SchI	GAGTC	3 cut(s)	221, 426, 452
ScrFI	CCNGG	2 cut(s)	203, 671
SduI	GDGCHC	2 cut(s)	131, 764
SfaNI	GCATC	2 cut(s)	422, 463
Sfr303I	CCGCGG	1 cut(s)	325
SgrAI	CRCCGGYG	1 cut(s)	614
SgrBI	CCGCGG	1 cut(s)	325
Sse9I	AATT	2 cut(s)	11, 482
SsiI	CCGC	4 cut(s)	322, 324, 339, 881
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	201, 669
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	308, 631
TaiI	ACGT	3 cut(s)	25, 445, 499
TaqI	TCGA	1 cut(s)	791
TaqII	GACCGA	1 cut(s)	731
TasI	AATT	2 cut(s)	11, 482
TatI	WGTACW	2 cut(s)	7, 587
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	3 cut(s)	367, 728, 847
Tru1I	TTAA	2 cut(s)	303, 507
Tru9I	TTAA	2 cut(s)	303, 507
TscAI	CASTG	3 cut(s)	136, 323, 636
TseI	GCWGC	2 cut(s)	266, 521
TspGWI	ACGGA	2 cut(s)	416, 721
TspRI	CASTG	3 cut(s)	136, 323, 636
XapI	RAATTY	1 cut(s)	482
XmiI	GTMKAC	2 cut(s)	198, 779
XspI	CTAG	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.