Rorug06G0295800

Cysteine-rich repeat secretory protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
44821891 .. 44823573
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0295800.1

Sequence Viewer

Length: 1683 bp
ATGAAAGCAGTTCAGGAGACTCCTCTGCGTCTCCTCCTCCTTCTTATTTTTTTGCTCTTTTTGCTTCTATTGGAGGTCACATCATCACAAAGAATACAAGCTGAAGCTCTCCTAAAATGGAAGAACAGCTTTACTTCTTCACCACAGTCTCTGAATTCATGGTCGCTCACAAACCTAAACCACCTATGCAACTGGACTGCCATTGTCTGCGACCGCAATACCAACACAGTTTCTGAAATCCACCTTGCAAACTTCAACATCACTGCAGCACTAACACAGTTCAACTTCGACAACTTTCACGATCTCGAGCATATCAACCTCAATGGCAACAATTTCTCAGGGCCTATACCATCTGCCATTGGCAACCTCACCAAGCTCATAACCTTGGATTTGGGAAACAATACCTTGGAACGAGAAGTGCCTGCGGAAATGGGCAAGTTAACGGAGCTTCAGTTTCTAAGTCTCTACAACAACTATCTCAATGGTACCATTCCCTATCAGCTGGACAATCTCAAAAAGGTACAATATTTTCTTTTTGGAGTTAACCACTTAGACACTCCTGACTGGACTAAATTTTCAGGCTTTCCTTTGTTGAGGTACCTTGATATTTCTCTGAACAGTTTAGATTCAGAATTTCCAGAATTTATATCTGAATGTAGGAACTTGACATTCCTGGATTTGTCCCAAAATGCTTTGACTGGCCAAATACCAGAAGTGGTATTTACCAATCTGGTCAAGCTTGAACATCTTAATCTTACCAGTAACCAATTCCAAGGGCCAATGCCATATAACTTTCCCAACCTCAAACACCTTTATTTGGGATTGAACGACTTTAGTGGTCCAATTCCTGAAGATATAGGTTTGATATCTGGTCTTCAATTTATTAGCCTGTATAACAATTCCTTAGAAGGCAAAACCCCATCCTCTGTAGGCCAACTCAGGGAGCTTCAGCACCTCGATCTTCGAGAGAATTCCTTGAACTCTTCAATCCCTTCTGAGCTTGGTCTTTGTACGAACCTCACTTATTTGGCCTTGGATGGGAATAAACTCAGTGGGGAACTGCCTCTGTCCTTGTCCAATCTCAAAAGCTTGGTGGAGTTGGGGTTATCTGATAATCTATTTACCGGACCAATCTTGCCTTCTCTGGTCTCCAATTGGACTGAAATGATCTCTTTGCAACTCCAAAACAATAGACTCAGTGGGAACCTTCCAGCAGAACTTGGCCTGTCGAAAAGACTTGATATCCTCGATCTGCACAGCAATAATTTCTCTGGATCAATTCCCTCAGACATAGGAAACTTGCAAGTTTTGACAAAATTGGATCTCTCTAGCAACCAACTTGACGGGGAATTGCCGAACACCATTTCTCTCCTCACTACCCTGATGGGCCAGTCCCTGGGCCAGTCCTTCCTTAATTGGAGGAGACAAAAGGAAAAAGAAAGCATGCGGCAGACAAAGGGAAAAGCATGCTGCAGAAGACAGGGAAAGAAAAGTAACAGAAGACAGGGAAAAGAAAAGAAAAAGAAAACCTGCAGCCGGCTTTGGAGAAAGAACTTGAGAGAGAATGTGAGAGATGGGGATATATATTCCCATATCGGCAGAGGTGTGCACAAGGAGAAAAGAAGGCAGAAAGAGAGTGCAGAAACCAAAAGAGGCAGAGAGCCCAAACTACAAACAGTGTGA

Protein Analysis

560

Amino Acids

63.17

Weight (kDa)

8.51

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 71 6.9e-07 Leucine rich repeat N-terminal domain
LRR_14 PF23598 96 - 175 5.3e-07 Leucine-rich repeat region
LRR_8 PF13855 102 - 160 1e-05 Leucine rich repeat
LRR_8 PF13855 197 - 257 5.6e-09 Leucine rich repeat
LRR_8 PF13855 291 - 350 3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40340
rosa_chinensis RchiOBHm_Chr6g0300411
rosa_laevigata RLG00000011340
rosa_multiflora Rmu_sc0001670.1_g000006
rosa_rugosa Rorug06G0295800
rosa_samantha Rh6AG408500 Rh6BG415800 Rh6CG423200 Rh6DG408800
rosa_wichuraiana Rw6G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1538
Acc65I GGTACC 2 cut(s) 485, 597
AccB1I GGYRCC 2 cut(s) 485, 597
AccB7I CCANNNNNTGG 1 cut(s) 1396
AciI CCGC 3 cut(s) 214, 425, 1447
AclWI GGATC 2 cut(s) 1282, 1329
AcoI YGGCCR 1 cut(s) 700
AcsI RAATTY 5 cut(s) 154, 572, 632, 641, 970
AcuI CTGAAG 4 cut(s) 123, 434, 870, 932
AfaI GTAC 4 cut(s) 487, 522, 599, 1012
AfiI CCNNNNNNNGG 5 cut(s) 817, 940, 1038, 1396, 1536
AgsI TTSAA 7 cut(s) 256, 283, 743, 826, 878, 979, 987
AjnI CCWGG 2 cut(s) 672, 1395
AjuI GAANNNNNNNTTGG 2 cut(s) 1123, 1155
Alw21I GWGCWC 1 cut(s) 1611
Alw26I GTCTC 6 cut(s) 11, 35, 153, 467, 1153, 1417
Alw44I GTGCAC 1 cut(s) 1607
AlwI GGATC 2 cut(s) 1282, 1329
AlwNI CAGNNNCTG 3 cut(s) 151, 233, 1396
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 8 cut(s) 341, 700, 776, 931, 1029, 1222, 1387, 1399
ApaLI GTGCAC 1 cut(s) 1607
ApeKI GCWGC 3 cut(s) 266, 1470, 1533
ApoI RAATTY 5 cut(s) 154, 572, 632, 641, 970
Asp718I GGTACC 2 cut(s) 485, 597
AspS9I GGNCC 6 cut(s) 341, 776, 839, 1127, 1387, 1399
AsuHPI GGTGA 2 cut(s) 132, 361
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 2 cut(s) 839, 1127
BaeGI GKGCMC 1 cut(s) 1611
BalI TGGCCA 1 cut(s) 702
BanI GGYRCC 2 cut(s) 485, 597
BanII GRGCYC 1 cut(s) 1665
BbsI GAAGAC 3 cut(s) 866, 1483, 1507
Bbv12I GWGCWC 1 cut(s) 1611
BbvI GCAGC 3 cut(s) 278, 1457, 1545
BccI CCATC 5 cut(s) 358, 928, 1031, 1378, 1568
BciT130I CCWGG 2 cut(s) 674, 1397
BcoDI GTCTC 6 cut(s) 11, 35, 153, 467, 1153, 1417
BfaI CTAG 1 cut(s) 1329
BfmI CTRYAG 4 cut(s) 264, 927, 1471, 1531
BfuAI ACCTGC 1 cut(s) 1538
BisI GCNGC 4 cut(s) 267, 1448, 1471, 1534
BlsI GCNGC 4 cut(s) 268, 1449, 1472, 1535
Bme1390I CCNGG 2 cut(s) 674, 1397
Bme18I GGWCC 2 cut(s) 839, 1127
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 6 cut(s) 341, 776, 839, 1127, 1387, 1399
BmiI GGNNCC 3 cut(s) 487, 599, 1205
BmrFI CCNGG 2 cut(s) 674, 1397
BpiI GAAGAC 3 cut(s) 866, 1483, 1507
BpuEI CTTGAG 1 cut(s) 1576
BsaI GGTCTC 1 cut(s) 1153
BsaJI CCNNGG 6 cut(s) 384, 405, 772, 1032, 1395, 1396
BsaWI WCCGGW 1 cut(s) 1124
BsaXI ACNNNNNCTCC 4 cut(s) 437, 467, 1088, 1118
Bsc4I CCNNNNNNNGG 5 cut(s) 817, 940, 1038, 1396, 1536
Bse118I RCCGGY 1 cut(s) 1536
Bse1I ACTGG 6 cut(s) 197, 569, 703, 759, 1390, 1402
BseBI CCWGG 2 cut(s) 674, 1397
BseDI CCNNGG 6 cut(s) 384, 405, 772, 1032, 1395, 1396
BseGI GGATG 2 cut(s) 920, 1042
BseLI CCNNNNNNNGG 5 cut(s) 817, 940, 1038, 1396, 1536
BseMII CTCAG 6 cut(s) 351, 952, 987, 1063, 1210, 1299
BseNI ACTGG 6 cut(s) 197, 569, 703, 759, 1390, 1402
BseRI GAGGAG 5 cut(s) 12, 23, 26, 1361, 1435
BseSI GKGCMC 1 cut(s) 1611
BseXI GCAGC 3 cut(s) 278, 1457, 1545
BsgI GTGCAG 2 cut(s) 1238, 1659
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 8 cut(s) 343, 702, 778, 933, 1031, 1224, 1389, 1401
BshNI GGYRCC 2 cut(s) 485, 597
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 1611
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 2 cut(s) 1125, 1537
BslFI GGGAC 2 cut(s) 667, 1378
BslI CCNNNNNNNGG 5 cut(s) 817, 940, 1038, 1396, 1536
BsmAI GTCTC 6 cut(s) 11, 35, 153, 467, 1153, 1417
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 2 cut(s) 667, 1378
BsnI GGCC 8 cut(s) 343, 702, 778, 933, 1031, 1224, 1389, 1401
Bso31I GGTCTC 1 cut(s) 1153
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 1611, 1665
Bsp143I GATC 6 cut(s) 301, 958, 1167, 1249, 1274, 1321
BspACI CCGC 3 cut(s) 214, 425, 1447
BspANI GGCC 8 cut(s) 343, 702, 778, 933, 1031, 1224, 1389, 1401
BspCNI CTCAG 6 cut(s) 350, 951, 988, 1062, 1209, 1298
BspLI GGNNCC 3 cut(s) 487, 599, 1205
BspMAI CTGCAG 3 cut(s) 268, 1475, 1535
BspMI ACCTGC 1 cut(s) 1538
BspPI GGATC 2 cut(s) 1282, 1329
BspT107I GGYRCC 2 cut(s) 485, 597
BspTNI GGTCTC 1 cut(s) 1153
BsrFI RCCGGY 1 cut(s) 1536
BsrI ACTGG 6 cut(s) 197, 569, 703, 759, 1390, 1402
BssAI RCCGGY 1 cut(s) 1536
BssECI CCNNGG 6 cut(s) 384, 405, 772, 1032, 1395, 1396
BssMI GATC 6 cut(s) 301, 958, 1167, 1249, 1274, 1321
BssT1I CCWWGG 4 cut(s) 384, 405, 772, 1032
Bst2UI CCWGG 2 cut(s) 674, 1397
Bst4CI ACNGT 5 cut(s) 147, 229, 279, 620, 1678
Bst6I CTCTTC 1 cut(s) 988
BstC8I GCNNGC 4 cut(s) 423, 1445, 1468, 1538
BstDEI CTNAG 9 cut(s) 337, 458, 550, 904, 938, 996, 1049, 1196, 1285
BstF5I GGATG 2 cut(s) 920, 1042
BstKTI GATC 6 cut(s) 304, 961, 1170, 1252, 1277, 1324
BstMAI GTCTC 6 cut(s) 11, 35, 153, 467, 1153, 1417
BstMBI GATC 6 cut(s) 301, 958, 1167, 1249, 1274, 1321
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNI CCWGG 2 cut(s) 674, 1397
BstNSI RCATGY 2 cut(s) 1447, 1470
BstSCI CCNGG 2 cut(s) 672, 1395
BstSFI CTRYAG 4 cut(s) 264, 927, 1471, 1531
BstSLI GKGCMC 1 cut(s) 1611
BstV1I GCAGC 3 cut(s) 278, 1457, 1545
BstV2I GAAGAC 3 cut(s) 866, 1483, 1507
BstX2I RGATCY 1 cut(s) 1321
BstYI RGATCY 1 cut(s) 1321
BsuRI GGCC 8 cut(s) 343, 702, 778, 933, 1031, 1224, 1389, 1401
BtsCI GGATG 2 cut(s) 920, 1042
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 4 cut(s) 261, 1057, 1204, 1683
BveI ACCTGC 1 cut(s) 1538
Cac8I GCNNGC 4 cut(s) 423, 1445, 1468, 1538
CaiI CAGNNNCTG 3 cut(s) 151, 233, 1396
Cfr10I RCCGGY 1 cut(s) 1536
Cfr13I GGNCC 6 cut(s) 341, 776, 839, 1127, 1387, 1399
CseI GACGC 1 cut(s) 17
Csp6I GTAC 4 cut(s) 486, 521, 598, 1011
CviAII CATG 3 cut(s) 159, 1444, 1467
CviQI GTAC 4 cut(s) 486, 521, 598, 1011
DdeI CTNAG 9 cut(s) 337, 458, 550, 904, 938, 996, 1049, 1196, 1285
DpnI GATC 6 cut(s) 303, 960, 1169, 1251, 1276, 1323
DpnII GATC 6 cut(s) 301, 958, 1167, 1249, 1274, 1321
EaeI YGGCCR 1 cut(s) 700
Eam1104I CTCTTC 1 cut(s) 988
EarI CTCTTC 1 cut(s) 988
Eco130I CCWWGG 4 cut(s) 384, 405, 772, 1032
Eco24I GRGCYC 1 cut(s) 1665
Eco31I GGTCTC 1 cut(s) 1153
Eco32I GATATC 2 cut(s) 867, 1243
Eco47I GGWCC 2 cut(s) 839, 1127
Eco57I CTGAAG 4 cut(s) 123, 434, 870, 932
Eco88I CYCGRG 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 341
EcoRI GAATTC 2 cut(s) 154, 970
EcoRII CCWGG 2 cut(s) 672, 1395
EcoRV GATATC 2 cut(s) 867, 1243
EcoT14I CCWWGG 4 cut(s) 384, 405, 772, 1032
EcoT38I GRGCYC 1 cut(s) 1665
ErhI CCWWGG 4 cut(s) 384, 405, 772, 1032
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 3 cut(s) 162, 1447, 1470
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 2 cut(s) 667, 1378
FatI CATG 3 cut(s) 158, 1443, 1466
Fnu4HI GCNGC 4 cut(s) 267, 1448, 1471, 1534
FokI GGATG 2 cut(s) 907, 1049
FriOI GRGCYC 1 cut(s) 1665
Fsp4HI GCNGC 4 cut(s) 267, 1448, 1471, 1534
FspBI CTAG 1 cut(s) 1329
GluI GCNGC 4 cut(s) 267, 1448, 1471, 1534
HaeIII GGCC 8 cut(s) 343, 702, 778, 933, 1031, 1224, 1389, 1401
HapII CCGG 2 cut(s) 1125, 1537
HgaI GACGC 1 cut(s) 17
Hin1II CATG 3 cut(s) 162, 1447, 1470
HincII GTYRAC 2 cut(s) 441, 544
HindII GTYRAC 2 cut(s) 441, 544
HindIII AAGCTT 2 cut(s) 737, 1087
HinfI GANTC 3 cut(s) 19, 626, 1194
HpaI GTTAAC 2 cut(s) 441, 544
HpaII CCGG 2 cut(s) 1125, 1537
HphI GGTGA 2 cut(s) 132, 361
Hpy166II GTNNAC 3 cut(s) 441, 544, 1609
Hpy188I TCNGA 8 cut(s) 153, 235, 615, 631, 652, 997, 1111, 1288
Hpy188III TCNNGA 8 cut(s) 14, 299, 305, 560, 638, 848, 965, 1272
Hpy8I GTNNAC 3 cut(s) 441, 544, 1609
HpyAV CCTTC 7 cut(s) 50, 902, 1002, 1149, 1217, 1417, 1617
HpyCH4III ACNGT 5 cut(s) 147, 229, 279, 620, 1678
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 9 cut(s) 337, 458, 550, 904, 938, 996, 1049, 1196, 1285
Hsp92II CATG 3 cut(s) 162, 1447, 1470
KpnI GGTACC 2 cut(s) 489, 601
KroI GCCGGC 1 cut(s) 1536
KroNI GCCGGC 1 cut(s) 1538
KspAI GTTAAC 2 cut(s) 441, 544
Kzo9I GATC 6 cut(s) 301, 958, 1167, 1249, 1274, 1321
LmnI GCTCC 2 cut(s) 445, 943
Lsp1109I GCAGC 3 cut(s) 278, 1457, 1545
MaeI CTAG 1 cut(s) 1329
MaeIII GTNAC 3 cut(s) 76, 761, 1493
MalI GATC 6 cut(s) 303, 960, 1169, 1251, 1276, 1323
MboI GATC 6 cut(s) 301, 958, 1167, 1249, 1274, 1321
MboII GAAGA 8 cut(s) 129, 133, 863, 866, 953, 975, 1488, 1512
MfeI CAATTG 1 cut(s) 1153
MflI RGATCY 1 cut(s) 1321
MhlI GDGCHC 2 cut(s) 1611, 1665
MlsI TGGCCA 1 cut(s) 702
MluNI TGGCCA 1 cut(s) 702
MlyI GAGTC 2 cut(s) 13, 1188
Mox20I TGGCCA 1 cut(s) 702
MroNI GCCGGC 1 cut(s) 1536
MscI TGGCCA 1 cut(s) 702
MseI TTAA 4 cut(s) 440, 543, 750, 1413
Msp20I TGGCCA 1 cut(s) 702
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 2 cut(s) 1125, 1537
MspR9I CCNGG 2 cut(s) 674, 1397
MunI CAATTG 1 cut(s) 1153
MvaI CCWGG 2 cut(s) 674, 1397
MwoI GCNNNNNNNGC 1 cut(s) 61
NaeI GCCGGC 1 cut(s) 1538
NdeII GATC 6 cut(s) 301, 958, 1167, 1249, 1274, 1321
NgoMIV GCCGGC 1 cut(s) 1536
NlaIII CATG 3 cut(s) 162, 1447, 1470
NlaIV GGNNCC 3 cut(s) 487, 599, 1205
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 2 cut(s) 1447, 1470
PaeI GCATGC 2 cut(s) 1447, 1470
PaeR7I CTCGAG 1 cut(s) 305
PasI CCCWGGG 1 cut(s) 1396
PdiI GCCGGC 1 cut(s) 1538
PfeI GAWTC 1 cut(s) 626
PflMI CCANNNNNTGG 1 cut(s) 1396
PfoI TCCNGGA 1 cut(s) 672
PkrI GCNGC 4 cut(s) 268, 1449, 1472, 1535
PleI GAGTC 2 cut(s) 13, 1188
PpsI GAGTC 2 cut(s) 13, 1188
Psp6I CCWGG 2 cut(s) 672, 1395
PspGI CCWGG 2 cut(s) 672, 1395
PspN4I GGNNCC 3 cut(s) 487, 599, 1205
PspPI GGNCC 6 cut(s) 341, 776, 839, 1127, 1387, 1399
PstI CTGCAG 3 cut(s) 268, 1475, 1535
PstNI CAGNNNCTG 3 cut(s) 151, 233, 1396
PsuI RGATCY 1 cut(s) 1321
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 4 cut(s) 487, 522, 599, 1012
RsaNI GTAC 4 cut(s) 486, 521, 598, 1011
SaqAI TTAA 4 cut(s) 440, 543, 750, 1413
SatI GCNGC 4 cut(s) 267, 1448, 1471, 1534
Sau3AI GATC 6 cut(s) 301, 958, 1167, 1249, 1274, 1321
Sau96I GGNCC 6 cut(s) 341, 776, 839, 1127, 1387, 1399
SchI GAGTC 2 cut(s) 13, 1188
ScrFI CCNGG 2 cut(s) 674, 1397
SduI GDGCHC 2 cut(s) 1611, 1665
SfcI CTRYAG 4 cut(s) 264, 927, 1471, 1531
Sfr274I CTCGAG 1 cut(s) 305
SinI GGWCC 2 cut(s) 839, 1127
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 305, 1555
SmoI CTYRAG 2 cut(s) 305, 1555
SphI GCATGC 2 cut(s) 1447, 1470
SsiI CCGC 3 cut(s) 214, 425, 1447
SspI AATATT 1 cut(s) 527
SspMI CTAG 1 cut(s) 1329
StyD4I CCNGG 2 cut(s) 672, 1395
StyI CCWWGG 4 cut(s) 384, 405, 772, 1032
TaaI ACNGT 5 cut(s) 147, 229, 279, 620, 1678
TaqI TCGA 6 cut(s) 288, 306, 957, 964, 1229, 1248
TauI GCSGC 1 cut(s) 1450
TfiI GAWTC 1 cut(s) 626
Tru1I TTAA 4 cut(s) 440, 543, 750, 1413
Tru9I TTAA 4 cut(s) 440, 543, 750, 1413
TscAI CASTG 4 cut(s) 268, 1057, 1204, 1683
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 3 cut(s) 266, 1470, 1533
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 17, 147
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 4 cut(s) 268, 1057, 1204, 1683
Van91I CCANNNNNTGG 1 cut(s) 1396
VneI GTGCAC 1 cut(s) 1607
VpaK11BI GGWCC 2 cut(s) 839, 1127
XapI RAATTY 5 cut(s) 154, 572, 632, 641, 970
XceI RCATGY 2 cut(s) 1447, 1470
XhoI CTCGAG 1 cut(s) 305
XspI CTAG 1 cut(s) 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.