Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0018396

Physical Location & Seq

Genomic Coordinates Forward (+)

7399775 .. 7402395

Gene Structure 2621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12441.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCCGACGACGACGGAGAATCCTGCTGTATCATCTCTTGTTTTGTTGTCGGGGTCTTGGTTTTCATCGTAGGAGTAGTACTCTTGTGTGTCCTCGGTACACCCGCTCACCCTTCCATTCATGTAACCGATGCCTCCCTCACCCCTCCTAACACCACCCACCACCACTACCATCTTGCCTTAAACATCACCATCCGGAACCCTAGCGTCTTCTACAAAAACTACAACAAGAACATCAAACTCGTTGCTTTCTGCAACAACAACCTGCACAAGCCGATCGGCACAGCGGAGGTCCTCCCCTTTGGGCAAAAGACACATGAGAAAGATAGTTTTACAGCACTGACGTTCAAAGGAGAAGAAGAGGAGGATGACTTCCAGGCTTGCGGAGAAAGTATCGATATCGATGGTCGCCATTACGATGACATAGTTATCAAGATATATATTTCGGATATCTACTATACGGCGGGGCTGAGTGCAAAGGATGCCTGGCAATCGGAGAGCGAGTTCAAATGTAACTTGAAGGTTCCTTTGATATTCACTGGTGCTGATGCTGTTAATGGATTTGAGGATACAAAGTGCAAATCCATCTCGTGTTACCTTTATATTACACCGGCTCACCCTTCCATTCATGTAACCGATGCCTCCCTCACCCCTCCTAACACCACCCACTACCGCTACCATCTTGCCCTAAACATCACCATCCGGAACCCTAGCTTCATCTACGAAACCTACAACAAGGACATCAAACTCGTTGCTTTCTGCAACAACAACCTGCACAAGCCTATCGGCACGGCGGAGGTCCTCCCCTTTGGGCTATTCTCAGAGCAAAAGGCTAGGTTTACAGCACTGACATTCAAAGGAGAAGAAGAGGAGGGTGAATTCCAGGCTTGCGGAGCAAGTAAGGATGGCCTTTATGATGACATAGTTATCAAGATATATATTTCGGGTATCCATTATTGGGTGGGGCCGAATGCTGCAATGGAGGGCTGGCAATCGGAGACCGAGTTCAAATGTAACTTGAAGGTTCCTTTGATCACTGGTGCTGATGCTGTTAACGGATTTGAGGATACAAAGTGCAAATCCAGTTTCAAACTACTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

368

Amino Acids

40.85

Weight (kDa)

5.41

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12441
rosa_chinensis	RchiOBHm_Chr5g0020351
rosa_multiflora	Rmu_sc0002087.1_g000002 Rmu_sc0007157.1_g000004
rosa_rugosa	Rorug05G0058800
rosa_samantha	Rh5AG149000 Rh5BG148700 Rh5CG160200 Rh5DG147400
rosa_wichuraiana	Rw5G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	273, 780
AccBSI	CCGCTC	1 cut(s)	107
AccIII	TCCGGA	2 cut(s)	195, 702
AciI	CCGC	7 cut(s)	105, 287, 384, 464, 673, 794, 891
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	878
AfaI	GTAC	2 cut(s)	81, 100
AfiI	CCNNNNNNNGG	1 cut(s)	958
AgsI	TTSAA	7 cut(s)	349, 508, 520, 856, 1009, 1021, 1090
AjnI	CCWGG	3 cut(s)	375, 485, 882
AloI	GAACNNNNNNTCC	4 cut(s)	488, 520, 989, 1021
AluBI	AGCT	1 cut(s)	714
AluI	AGCT	1 cut(s)	714
Alw26I	GTCTC	1 cut(s)	992
Aor13HI	TCCGGA	2 cut(s)	195, 702
AoxI	GGCC	3 cut(s)	3, 907, 965
ApeKI	GCWGC	1 cut(s)	974
ApoI	RAATTY	1 cut(s)	878
AspS9I	GGNCC	3 cut(s)	292, 799, 965
AsuHPI	GGTGA	7 cut(s)	101, 133, 181, 608, 640, 688, 887
AvaII	GGWCC	2 cut(s)	292, 799
BauI	CACGAG	1 cut(s)	589
BbsI	GAAGAC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	961
BccI	CCATC	7 cut(s)	180, 200, 398, 593, 687, 707, 899
BceAI	ACGGC	2 cut(s)	477, 807
BciT130I	CCWGG	3 cut(s)	377, 487, 884
BciVI	GTATCC	3 cut(s)	562, 959, 1060
BclI	TGATCA	1 cut(s)	1032
BcoDI	GTCTC	1 cut(s)	992
BfaI	CTAG	4 cut(s)	204, 711, 834, 1102
BfuAI	ACCTGC	2 cut(s)	273, 780
BfuI	GTATCC	3 cut(s)	562, 959, 1060
BisI	GCNGC	1 cut(s)	975
BlsI	GCNGC	1 cut(s)	976
BmcAI	AGTACT	1 cut(s)	81
Bme1390I	CCNGG	3 cut(s)	377, 487, 884
Bme18I	GGWCC	2 cut(s)	292, 799
BmgT120I	GGNCC	3 cut(s)	292, 799, 965
BmiI	GGNNCC	5 cut(s)	200, 525, 707, 966, 1026
BmrFI	CCNGG	3 cut(s)	377, 487, 884
BmsI	GCATC	5 cut(s)	121, 472, 538, 628, 1036
BpiI	GAAGAC	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
Bsa29I	ATCGAT	2 cut(s)	396, 402
BsaI	GGTCTC	1 cut(s)	992
BsaJI	CCNNGG	1 cut(s)	94
BsaWI	WCCGGW	2 cut(s)	195, 702
BsaXI	ACNNNNNCTCC	4 cut(s)	488, 518, 989, 1019
Bsc4I	CCNNNNNNNGG	1 cut(s)	958
Bse118I	RCCGGY	1 cut(s)	610
Bse1I	ACTGG	3 cut(s)	544, 1042, 1083
Bse3DI	GCAATG	1 cut(s)	984
BseAI	TCCGGA	2 cut(s)	195, 702
BseBI	CCWGG	3 cut(s)	377, 487, 884
BseCI	ATCGAT	2 cut(s)	396, 402
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	5 cut(s)	192, 373, 487, 699, 910
BseLI	CCNNNNNNNGG	1 cut(s)	958
BseMI	GCAATG	1 cut(s)	984
BseMII	CTCAG	2 cut(s)	461, 834
BseNI	ACTGG	3 cut(s)	544, 1042, 1083
BseRI	GAGGAG	2 cut(s)	377, 884
BseXI	GCAGC	1 cut(s)	961
BsgI	GTGCAG	2 cut(s)	251, 758
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	5, 909, 967
BshVI	ATCGAT	2 cut(s)	396, 402
BsiEI	CGRYCG	1 cut(s)	279
BsiSI	CCGG	3 cut(s)	196, 611, 703
BslI	CCNNNNNNNGG	1 cut(s)	958
BsmAI	GTCTC	1 cut(s)	992
BsmI	GAATGC	1 cut(s)	976
BsnI	GGCC	3 cut(s)	5, 909, 967
Bso31I	GGTCTC	1 cut(s)	992
Bsp13I	TCCGGA	2 cut(s)	195, 702
Bsp143I	GATC	2 cut(s)	276, 1032
BspACI	CCGC	7 cut(s)	105, 287, 384, 464, 673, 794, 891
BspANI	GGCC	3 cut(s)	5, 909, 967
BspCNI	CTCAG	2 cut(s)	462, 833
BspDI	ATCGAT	2 cut(s)	396, 402
BspEI	TCCGGA	2 cut(s)	195, 702
BspLI	GGNNCC	5 cut(s)	200, 525, 707, 966, 1026
BspMI	ACCTGC	2 cut(s)	273, 780
BspTNI	GGTCTC	1 cut(s)	992
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	984
BsrFI	RCCGGY	1 cut(s)	610
BsrI	ACTGG	3 cut(s)	544, 1042, 1083
BssAI	RCCGGY	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	276, 1032
BssSI	CACGAG	1 cut(s)	589
Bst2BI	CACGAG	1 cut(s)	589
Bst2UI	CCWGG	3 cut(s)	377, 487, 884
Bst6I	CTCTTC	2 cut(s)	354, 861
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstC8I	GCNNGC	3 cut(s)	382, 889, 989
BstDEI	CTNAG	2 cut(s)	470, 820
BstF5I	GGATG	5 cut(s)	192, 373, 487, 699, 910
BstKTI	GATC	2 cut(s)	279, 1035
BstMAI	GTCTC	1 cut(s)	992
BstMBI	GATC	2 cut(s)	276, 1032
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 893
BstNI	CCWGG	3 cut(s)	377, 487, 884
BstSCI	CCNGG	3 cut(s)	375, 485, 882
BstV1I	GCAGC	1 cut(s)	961
BstV2I	GAAGAC	1 cut(s)	202
Bsu15I	ATCGAT	2 cut(s)	396, 402
BsuI	GTATCC	3 cut(s)	562, 959, 1060
BsuRI	GGCC	3 cut(s)	5, 909, 967
BsuTUI	ATCGAT	2 cut(s)	396, 402
BtsCI	GGATG	5 cut(s)	192, 373, 487, 699, 910
BtsIMutI	CAGTG	4 cut(s)	338, 537, 845, 1035
BveI	ACCTGC	2 cut(s)	273, 780
Cac8I	GCNNGC	3 cut(s)	382, 889, 989
Cfr10I	RCCGGY	1 cut(s)	610
Cfr13I	GGNCC	3 cut(s)	292, 799, 965
ClaI	ATCGAT	2 cut(s)	396, 402
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	80, 99
CviAII	CATG	3 cut(s)	122, 317, 629
CviQI	GTAC	2 cut(s)	80, 99
DdeI	CTNAG	2 cut(s)	470, 820
DpnI	GATC	2 cut(s)	278, 1034
DpnII	GATC	2 cut(s)	276, 1032
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	354, 861
EarI	CTCTTC	2 cut(s)	354, 861
EciI	GGCGGA	1 cut(s)	809
Eco31I	GGTCTC	1 cut(s)	992
Eco32I	GATATC	2 cut(s)	400, 451
Eco47I	GGWCC	2 cut(s)	292, 799
EcoO109I	RGGNCCY	2 cut(s)	292, 799
EcoRI	GAATTC	1 cut(s)	878
EcoRII	CCWGG	3 cut(s)	375, 485, 882
EcoRV	GATATC	2 cut(s)	400, 451
FaeI	CATG	3 cut(s)	125, 320, 632
FatI	CATG	3 cut(s)	121, 316, 628
FauI	CCCGC	2 cut(s)	112, 457
FbaI	TGATCA	1 cut(s)	1032
Fnu4HI	GCNGC	1 cut(s)	975
FokI	GGATG	5 cut(s)	179, 380, 494, 686, 917
Fsp4HI	GCNGC	1 cut(s)	975
FspBI	CTAG	4 cut(s)	204, 711, 834, 1102
GluI	GCNGC	1 cut(s)	975
HaeIII	GGCC	3 cut(s)	5, 909, 967
HapII	CCGG	3 cut(s)	196, 611, 703
HgaI	GACGC	1 cut(s)	196
Hin1II	CATG	3 cut(s)	125, 320, 632
HincII	GTYRAC	1 cut(s)	1054
HindII	GTYRAC	1 cut(s)	1054
HinfI	GANTC	1 cut(s)	20
HpaI	GTTAAC	1 cut(s)	1054
HpaII	CCGG	3 cut(s)	196, 611, 703
HphI	GGTGA	7 cut(s)	101, 133, 181, 608, 640, 688, 887
Hpy166II	GTNNAC	3 cut(s)	101, 840, 1054
Hpy188I	TCNGA	4 cut(s)	448, 496, 823, 997
Hpy188III	TCNNGA	4 cut(s)	196, 433, 703, 931
Hpy8I	GTNNAC	3 cut(s)	101, 840, 1054
Hpy99I	CGWCG	3 cut(s)	11, 14, 17
HpyAV	CCTTC	4 cut(s)	123, 514, 630, 1015
HpyCH4IV	ACGT	1 cut(s)	344
HpyCH4V	TGCA	8 cut(s)	255, 268, 476, 579, 762, 775, 977, 1077
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 893
HpyF3I	CTNAG	2 cut(s)	470, 820
HpySE526I	ACGT	1 cut(s)	344
Hsp92II	CATG	3 cut(s)	125, 320, 632
Kpn2I	TCCGGA	2 cut(s)	195, 702
Ksp22I	TGATCA	1 cut(s)	1032
KspAI	GTTAAC	1 cut(s)	1054
Kzo9I	GATC	2 cut(s)	276, 1032
LmnI	GCTCC	1 cut(s)	893
Lsp1109I	GCAGC	1 cut(s)	961
LweI	GCATC	5 cut(s)	121, 472, 538, 628, 1036
MaeI	CTAG	4 cut(s)	204, 711, 834, 1102
MaeII	ACGT	1 cut(s)	344
MaeIII	GTNAC	5 cut(s)	124, 512, 593, 631, 1013
MalI	GATC	2 cut(s)	278, 1034
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	2 cut(s)	276, 1032
MboII	GAAGA	5 cut(s)	202, 368, 371, 875, 878
MluCI	AATT	1 cut(s)	878
MroI	TCCGGA	2 cut(s)	195, 702
MseI	TTAA	3 cut(s)	182, 555, 1053
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	3 cut(s)	196, 611, 703
MspR9I	CCNGG	3 cut(s)	377, 487, 884
Mva1269I	GAATGC	1 cut(s)	976
MvaI	CCWGG	3 cut(s)	377, 487, 884
MwoI	GCNNNNNNNGC	2 cut(s)	482, 893
NdeII	GATC	2 cut(s)	276, 1032
NlaIII	CATG	3 cut(s)	125, 320, 632
NlaIV	GGNNCC	5 cut(s)	200, 525, 707, 966, 1026
PctI	GAATGC	1 cut(s)	976
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	976
Ple19I	CGATCG	1 cut(s)	279
PpuMI	RGGWCCY	2 cut(s)	292, 799
Psp5II	RGGWCCY	2 cut(s)	292, 799
Psp6I	CCWGG	3 cut(s)	375, 485, 882
PspGI	CCWGG	3 cut(s)	375, 485, 882
PspN4I	GGNNCC	5 cut(s)	200, 525, 707, 966, 1026
PspPI	GGNCC	3 cut(s)	292, 799, 965
PspPPI	RGGWCCY	2 cut(s)	292, 799
PvuI	CGATCG	1 cut(s)	279
RsaI	GTAC	2 cut(s)	81, 100
RsaNI	GTAC	2 cut(s)	80, 99
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	3 cut(s)	182, 555, 1053
SatI	GCNGC	1 cut(s)	975
Sau3AI	GATC	2 cut(s)	276, 1032
Sau96I	GGNCC	3 cut(s)	292, 799, 965
ScaI	AGTACT	1 cut(s)	81
ScrFI	CCNGG	3 cut(s)	377, 487, 884
SfaNI	GCATC	5 cut(s)	121, 472, 538, 628, 1036
SinI	GGWCC	2 cut(s)	292, 799
SmiMI	CAYNNNNRTG	1 cut(s)	417
Sse9I	AATT	1 cut(s)	878
SsiI	CCGC	7 cut(s)	105, 287, 384, 464, 673, 794, 891
SspMI	CTAG	4 cut(s)	204, 711, 834, 1102
StyD4I	CCNGG	3 cut(s)	375, 485, 882
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	2 cut(s)	396, 402
TaqII	GACCGA	1 cut(s)	1016
TasI	AATT	1 cut(s)	878
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	182, 555, 1053
Tru9I	TTAA	3 cut(s)	182, 555, 1053
TscAI	CASTG	4 cut(s)	345, 544, 852, 1042
TseI	GCWGC	1 cut(s)	974
TspDTI	ATGAA	4 cut(s)	55, 110, 617, 706
TspGWI	ACGGA	2 cut(s)	30, 1071
TspRI	CASTG	4 cut(s)	345, 544, 852, 1042
VpaK11BI	GGWCC	2 cut(s)	292, 799
XapI	RAATTY	1 cut(s)	878
XspI	CTAG	4 cut(s)	204, 711, 834, 1102
ZrmI	AGTACT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.