FvH4_3g17070

Cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018400
Physical Location & Seq
Reverse (-)
10795050 .. 10799014
3965 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17070.t3

Sequence Viewer

Length: 936 bp
ATGAATAGATCTATGAAAGTTGAGGAAGGGTTAATGATTATAGACGAGGCAATTCAGAAAGTAAAGAAGATTGTGGAAGGATTTCCAGAGACCAAGTTCACCACAGAAGAATATATGAAGTACCATGCATGTGTTTATATTATGTGTGATAAGCCTTTGGCTGGAAATGAGGCATTGCTATATGGAAAATTTAAGAAGGGCTTGGAAGACATCATCATCTCCTCGGTACTCCCCTCATTGGTAGCCAAAGAAAACGAGTTTCTGTTGAAGGAGTTTGTACACATGTGGTCAAATTACAAGATAATGGTGAGGTGGCTATGTAGATTCTTTGAATACCTTGACCGCTATTATATCCCCCGTCATGGTCTTGTCTCATTGACTGAAGCCTCAATTGATTGCTTTTGTAATCTGGTCTTCAGTGGGTTGGCTAACAGAATTCAGTTAGCTGCAACGTCTCTGATTAATCAAGAGCGTTATGGACAGCTGATTGATGGAAAGCTGCTTCAAGATGTCATGGGTATCTTTATGGAAATCGGTCAAAATGGATCGCCATCATACTATGAAACCATTGAGCGGGCTATGCTGGGAGAAACTGCCAATTTCTATTCCCGATTATCTTCAGAGTTGCTTTTGTGTGATTCATTGACCGATTATATCCAGAAGGTGAACTGGTGCATTTTGCAGGAGAAAGAAAGAGCTGACCACTATCTACATCCCACATCTGTGGTTAAATTATTACAGGTTGTGCGCTTCCAGTTGCTGGATCTGAATGCAAATAAATTGCTTGAGAAGCAGAAGTCTGAAAACTGCAGTCAACTGGATTATCAGGAGATATTGTCCAAGTGTGCCTGCTTAAATTTCGGAGAGGACAGCTCTACATCTACACTGGTGGAAAGTCTATGTTCTTCAATGGCACAATCAGCTCATATTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Cullin

Protein Analysis

312

Amino Acids

35.74

Weight (kDa)

5.49

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 21 - 271 7.1e-42 Cullin alpha solenoid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018400)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g17070 FvH4_3g17070 FvH4_3g17070
rosa_chinensis RchiOBHm_Chr5g0028421
rosa_laevigata RLG00000033093
rosa_multiflora Rmu_sc0006771.1_g000005
rosa_roxburghii Rroxscaffold_1G00051260
rosa_rugosa Rorug05G0107500
rosa_samantha Rh5AG200300 Rh5BG198700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 760
AccBSI CCGCTC 1 cut(s) 574
AciI CCGC 2 cut(s) 343, 574
AclWI GGATC 2 cut(s) 553, 771
AcsI RAATTY 3 cut(s) 188, 435, 856
AcuI CTGAAG 3 cut(s) 400, 402, 603
AfaI GTAC 3 cut(s) 122, 228, 279
AfiI CCNNNNNNNGG 5 cut(s) 161, 238, 362, 573, 760
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 4 cut(s) 268, 332, 506, 909
AleI CACNNNNGTG 1 cut(s) 722
AluBI AGCT 6 cut(s) 446, 484, 499, 698, 873, 923
AluI AGCT 6 cut(s) 446, 484, 499, 698, 873, 923
Alw26I GTCTC 3 cut(s) 83, 376, 459
AlwI GGATC 2 cut(s) 553, 771
AlwNI CAGNNNCTG 1 cut(s) 760
ApeKI GCWGC 2 cut(s) 446, 499
ApoI RAATTY 3 cut(s) 188, 435, 856
AseI ATTAAT 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 1 cut(s) 750
AsuHPI GGTGA 3 cut(s) 91, 319, 676
BbsI GAAGAC 2 cut(s) 213, 406
BbvI GCAGC 2 cut(s) 433, 486
BccI CCATC 2 cut(s) 485, 559
BcoDI GTCTC 3 cut(s) 83, 376, 459
BfmI CTRYAG 1 cut(s) 808
BglII AGATCT 1 cut(s) 8
BisI GCNGC 2 cut(s) 447, 500
BlsI GCNGC 2 cut(s) 448, 501
BpiI GAAGAC 2 cut(s) 213, 406
BplI GAGNNNNNCTC 2 cut(s) 857, 889
BpuEI CTTGAG 1 cut(s) 806
BsaBI GATNNNNATC 1 cut(s) 550
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 821, 851
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 238, 362, 573, 760
Bse1I ACTGG 4 cut(s) 674, 754, 822, 891
Bse3DI GCAATG 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 550
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 712
BseJI GATNNNNATC 1 cut(s) 550
BseLI CCNNNNNNNGG 5 cut(s) 161, 238, 362, 573, 760
BseMI GCAATG 1 cut(s) 173
BseNI ACTGG 4 cut(s) 674, 754, 822, 891
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 433, 486
BseYI CCCAGC 1 cut(s) 583
BslI CCNNNNNNNGG 5 cut(s) 161, 238, 362, 573, 760
BsmAI GTCTC 3 cut(s) 83, 376, 459
BsmBI CGTCTC 1 cut(s) 459
BsmI GAATGC 1 cut(s) 775
Bso31I GGTCTC 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 3 cut(s) 8, 545, 763
BspACI CCGC 2 cut(s) 343, 574
BspMAI CTGCAG 1 cut(s) 812
BspPI GGATC 2 cut(s) 553, 771
BspTNI GGTCTC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 574
BsrDI GCAATG 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 277
BsrI ACTGG 4 cut(s) 674, 754, 822, 891
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 8, 545, 763
BstAUI TGTACA 1 cut(s) 277
BstC8I GCNNGC 2 cut(s) 576, 850
BstF5I GGATG 1 cut(s) 712
BstHHI GCGC 1 cut(s) 750
BstKTI GATC 3 cut(s) 11, 548, 766
BstMAI GTCTC 3 cut(s) 83, 376, 459
BstMBI GATC 3 cut(s) 8, 545, 763
BstMWI GCNNNNNNNGC 3 cut(s) 580, 790, 920
BstNSI RCATGY 2 cut(s) 132, 286
BstSFI CTRYAG 1 cut(s) 808
BstV1I GCAGC 2 cut(s) 433, 486
BstV2I GAAGAC 2 cut(s) 213, 406
BstX2I RGATCY 2 cut(s) 8, 763
BstXI CCANNNNNNTGG 1 cut(s) 724
BstYI RGATCY 2 cut(s) 8, 763
BtsCI GGATG 1 cut(s) 712
BtsIMutI CAGTG 2 cut(s) 424, 884
Cac8I GCNNGC 2 cut(s) 576, 850
CaiI CAGNNNCTG 1 cut(s) 760
CfoI GCGC 1 cut(s) 750
Csp6I GTAC 3 cut(s) 121, 227, 278
CviAII CATG 5 cut(s) 125, 129, 283, 362, 514
CviQI GTAC 3 cut(s) 121, 227, 278
DpnI GATC 3 cut(s) 10, 547, 765
DpnII GATC 3 cut(s) 8, 545, 763
Eco31I GGTCTC 1 cut(s) 83
Eco57I CTGAAG 3 cut(s) 400, 402, 603
EcoRI GAATTC 1 cut(s) 435
EcoT22I ATGCAT 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 459
FaeI CATG 5 cut(s) 128, 132, 286, 365, 517
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 5 cut(s) 124, 128, 282, 361, 513
FauI CCCGC 1 cut(s) 567
Fnu4HI GCNGC 2 cut(s) 447, 500
FokI GGATG 1 cut(s) 699
Fsp4HI GCNGC 2 cut(s) 447, 500
GlaI GCGC 1 cut(s) 749
GluI GCNGC 2 cut(s) 447, 500
GsaI CCCAGC 1 cut(s) 587
HhaI GCGC 1 cut(s) 750
Hin1II CATG 5 cut(s) 128, 132, 286, 365, 517
Hin6I GCGC 1 cut(s) 748
HinP1I GCGC 1 cut(s) 748
HincII GTYRAC 1 cut(s) 815
HindII GTYRAC 1 cut(s) 815
HinfI GANTC 2 cut(s) 324, 638
HphI GGTGA 3 cut(s) 91, 319, 676
Hpy166II GTNNAC 4 cut(s) 99, 280, 667, 815
Hpy188I TCNGA 6 cut(s) 57, 459, 622, 768, 802, 863
Hpy188III TCNNGA 6 cut(s) 86, 467, 506, 609, 658, 827
Hpy8I GTNNAC 4 cut(s) 99, 280, 667, 815
HpyAV CCTTC 5 cut(s) 20, 71, 190, 262, 655
HpyCH4IV ACGT 1 cut(s) 452
HpyCH4V TGCA 6 cut(s) 128, 449, 675, 682, 773, 810
HpyF10VI GCNNNNNNNGC 3 cut(s) 580, 790, 920
HpySE526I ACGT 1 cut(s) 452
Hsp92II CATG 5 cut(s) 128, 132, 286, 365, 517
HspAI GCGC 1 cut(s) 748
Kzo9I GATC 3 cut(s) 8, 545, 763
Lsp1109I GCAGC 2 cut(s) 433, 486
MaeII ACGT 1 cut(s) 452
MalI GATC 3 cut(s) 10, 547, 765
MbiI CCGCTC 1 cut(s) 574
MboI GATC 3 cut(s) 8, 545, 763
MboII GAAGA 6 cut(s) 79, 119, 218, 406, 609, 897
MfeI CAATTG 1 cut(s) 390
MflI RGATCY 2 cut(s) 8, 763
MluCI AATT 9 cut(s) 51, 188, 292, 390, 435, 598, 731, 779, 856
MnlI CCTC 8 cut(s) 16, 40, 163, 232, 244, 303, 397, 859
Mph1103I ATGCAT 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 6 cut(s) 32, 192, 462, 729, 854, 934
MslI CAYNNNNRTG 2 cut(s) 129, 722
MspA1I CMGCKG 1 cut(s) 484
MunI CAATTG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 775
MwoI GCNNNNNNNGC 3 cut(s) 580, 790, 920
NdeII GATC 3 cut(s) 8, 545, 763
NlaIII CATG 5 cut(s) 128, 132, 286, 365, 517
NsiI ATGCAT 1 cut(s) 130
NspI RCATGY 2 cut(s) 132, 286
OliI CACNNNNGTG 1 cut(s) 722
PciI ACATGT 1 cut(s) 282
PctI GAATGC 1 cut(s) 775
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 324, 638
PflMI CCANNNNNTGG 1 cut(s) 760
PkrI GCNGC 2 cut(s) 448, 501
PscI ACATGT 1 cut(s) 282
PshBI ATTAAT 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 583
PstI CTGCAG 1 cut(s) 812
PstNI CAGNNNCTG 1 cut(s) 760
PsuI RGATCY 2 cut(s) 8, 763
PvuII CAGCTG 1 cut(s) 484
RsaI GTAC 3 cut(s) 122, 228, 279
RsaNI GTAC 3 cut(s) 121, 227, 278
RseI CAYNNNNRTG 2 cut(s) 129, 722
SaqAI TTAA 6 cut(s) 32, 192, 462, 729, 854, 934
SatI GCNGC 2 cut(s) 447, 500
Sau3AI GATC 3 cut(s) 8, 545, 763
SfcI CTRYAG 1 cut(s) 808
SmiMI CAYNNNNRTG 2 cut(s) 129, 722
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 9 cut(s) 51, 188, 292, 390, 435, 598, 731, 779, 856
SsiI CCGC 2 cut(s) 343, 574
TaiI ACGT 1 cut(s) 455
TaqII GACCGA 2 cut(s) 524, 662
TasI AATT 9 cut(s) 51, 188, 292, 390, 435, 598, 731, 779, 856
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 2 cut(s) 324, 638
Tru1I TTAA 6 cut(s) 32, 192, 462, 729, 854, 934
Tru9I TTAA 6 cut(s) 32, 192, 462, 729, 854, 934
TscAI CASTG 2 cut(s) 424, 891
TseI GCWGC 2 cut(s) 446, 499
TspDTI ATGAA 6 cut(s) 17, 29, 131, 576, 630, 920
TspRI CASTG 2 cut(s) 424, 891
Van91I CCANNNNNTGG 1 cut(s) 760
VspI ATTAAT 1 cut(s) 462
XapI RAATTY 3 cut(s) 188, 435, 856
XceI RCATGY 2 cut(s) 132, 286
XmnI GAANNNNTTC 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.