FvH4_3g17170

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0022186
Physical Location & Seq
Forward (+)
10875919 .. 10877050
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17170.t1

Sequence Viewer

Length: 642 bp
ATGAATTTGTTTCATTTCCCTGTTCTTGAATATTTATCTATAGATGGAGATCTTGGACACAGTTTGTTGGACTTTAGCATCTCCGCGCCTGAGTTGAAGACATTAAGGATAGATTTGTACAGTTCAGATGATTCGGATGATATGTACTTCTTTTCTATTGGTGCCCCGAAGCTTGAAAAACTTGATCTCCATGCTTGCTCTGTGCCTGCTTTTGATAATTTGAGCAAATTAACGCTGGTTGATTTTAGCGGCTCTCACTGGTGGGAACTTTTAATGAGGTGGCTCGAGAGATCACCCAATCTAGAATGTCTTGAAATAGACGATGGGTTTTATCCAATCAGAAGTCGGATGGAAGCATACATGAATGAAGTTCCTGAGAAAACTGAGGTGACTGAACGAAATGTGTTCGACCTTACCAAGTACGCGAAAGTGCTGAATTGGATTCCACCGGAACATGTTCCTAACTGTTTATCGTCACGCCTGAAGACTATCTCCATTAAGGGATTAACTGGAAAGGCACACATTGGATATCTTGATGAAATGGAATTGATCAAGTATTTGTTAAAACATGGTCGAGTTTTGGAGAAGATGACTATATATACTCCTGGTCTACATAGGAGTACAGCAGATGAAATCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

214

Amino Acids

24.55

Weight (kDa)

5.15

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 150 - 199 2e-12 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022186)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g17170
rosa_rugosa Rorug05G0109600
rosa_samantha Rh5CG220100 Rh5DG202800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 610
AccII CGCG 2 cut(s) 86, 425
AciI CCGC 2 cut(s) 84, 249
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 4 cut(s) 119, 146, 422, 622
AflIII ACRYGT 1 cut(s) 454
AgsI TTSAA 4 cut(s) 29, 97, 176, 314
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Ama87I CYCGRG 1 cut(s) 284
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 456
AspLEI GCGC 1 cut(s) 88
AsuHPI GGTGA 2 cut(s) 285, 400
AvaI CYCGRG 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 161
BbsI GAAGAC 2 cut(s) 104, 491
BccI CCATC 3 cut(s) 38, 317, 343
BciT130I CCWGG 1 cut(s) 606
BclI TGATCA 1 cut(s) 549
BfaI CTAG 2 cut(s) 302, 640
BfmI CTRYAG 1 cut(s) 39
BglII AGATCT 1 cut(s) 49
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 606
BmeT110I CYCGRG 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 606
BmsI GCATC 1 cut(s) 87
BpiI GAAGAC 2 cut(s) 104, 491
BsaBI GATNNNNATC 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 448
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bse1I ACTGG 2 cut(s) 263, 514
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 1 cut(s) 606
BseGI GGATG 2 cut(s) 142, 354
BseJI GATNNNNATC 1 cut(s) 48
BseMII CTCAG 3 cut(s) 81, 366, 375
BseNI ACTGG 2 cut(s) 263, 514
BseSI GKGCMC 1 cut(s) 166
Bsh1236I CGCG 2 cut(s) 86, 425
BshNI GGYRCC 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 1 cut(s) 449
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 166
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 4 cut(s) 49, 184, 290, 549
BspACI CCGC 2 cut(s) 84, 249
BspCNI CTCAG 3 cut(s) 82, 367, 376
BspFNI CGCG 2 cut(s) 86, 425
BspLI GGNNCC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 117
BsrI ACTGG 2 cut(s) 263, 514
BssMI GATC 4 cut(s) 49, 184, 290, 549
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 3 cut(s) 62, 122, 467
BstAUI TGTACA 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 196, 207
BstDEI CTNAG 3 cut(s) 90, 375, 384
BstF5I GGATG 2 cut(s) 142, 354
BstFNI CGCG 2 cut(s) 86, 425
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 4 cut(s) 52, 187, 293, 552
BstMBI GATC 4 cut(s) 49, 184, 290, 549
BstNI CCWGG 1 cut(s) 606
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 604
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 166
BstUI CGCG 2 cut(s) 86, 425
BstV2I GAAGAC 2 cut(s) 104, 491
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtsCI GGATG 2 cut(s) 142, 354
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 196, 207
CfoI GCGC 1 cut(s) 88
Csp6I GTAC 4 cut(s) 118, 145, 421, 621
CviAII CATG 4 cut(s) 191, 361, 455, 569
CviJI RGCY 3 cut(s) 172, 252, 283
CviKI_1 RGCY 3 cut(s) 172, 252, 283
CviQI GTAC 4 cut(s) 118, 145, 421, 621
DdeI CTNAG 3 cut(s) 90, 375, 384
DpnI GATC 4 cut(s) 51, 186, 292, 551
DpnII GATC 4 cut(s) 49, 184, 290, 549
Eco32I GATATC 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 503
Eco88I CYCGRG 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 604
EcoRV GATATC 1 cut(s) 530
FaeI CATG 4 cut(s) 194, 364, 458, 572
FatI CATG 4 cut(s) 190, 360, 454, 568
FbaI TGATCA 1 cut(s) 549
FblI GTMKAC 1 cut(s) 610
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 2 cut(s) 149, 361
Fsp4HI GCNGC 1 cut(s) 250
FspBI CTAG 2 cut(s) 302, 640
GlaI GCGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 250
HapII CCGG 1 cut(s) 449
HhaI GCGC 1 cut(s) 88
Hin1II CATG 4 cut(s) 194, 364, 458, 572
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 131, 442
HpaII CCGG 1 cut(s) 449
HphI GGTGA 2 cut(s) 285, 400
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 4 cut(s) 127, 136, 341, 348
Hpy188III TCNNGA 6 cut(s) 26, 286, 302, 311, 374, 533
Hpy8I GTNNAC 1 cut(s) 611
HpyCH4III ACNGT 3 cut(s) 62, 122, 467
HpyF3I CTNAG 3 cut(s) 90, 375, 384
Hsp92II CATG 4 cut(s) 194, 364, 458, 572
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 549
Kzo9I GATC 4 cut(s) 49, 184, 290, 549
LweI GCATC 1 cut(s) 87
MaeI CTAG 2 cut(s) 302, 640
MaeIII GTNAC 2 cut(s) 388, 474
MalI GATC 4 cut(s) 51, 186, 292, 551
MboI GATC 4 cut(s) 49, 184, 290, 549
MboII GAAGA 3 cut(s) 109, 496, 598
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 5 cut(s) 4, 217, 227, 436, 545
MmeI TCCRAC 2 cut(s) 48, 326
MnlI CCTC 2 cut(s) 270, 379
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 6 cut(s) 104, 230, 272, 498, 506, 563
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 1 cut(s) 606
MvaI CCWGG 1 cut(s) 606
MvnI CGCG 2 cut(s) 86, 425
NdeII GATC 4 cut(s) 49, 184, 290, 549
NlaIII CATG 4 cut(s) 194, 364, 458, 572
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 388, 474
NspI RCATGY 1 cut(s) 458
PaeR7I CTCGAG 1 cut(s) 284
PciI ACATGT 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 2 cut(s) 131, 442
PkrI GCNGC 1 cut(s) 251
PscI ACATGT 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 4 cut(s) 119, 146, 422, 622
RsaNI GTAC 4 cut(s) 118, 145, 421, 621
SaqAI TTAA 6 cut(s) 104, 230, 272, 498, 506, 563
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 4 cut(s) 49, 184, 290, 549
ScrFI CCNGG 1 cut(s) 606
SduI GDGCHC 1 cut(s) 166
SetI ASST 4 cut(s) 174, 281, 390, 414
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 5 cut(s) 4, 217, 227, 436, 545
SsiI CCGC 2 cut(s) 84, 249
SspI AATATT 1 cut(s) 32
SspMI CTAG 2 cut(s) 302, 640
StyD4I CCNGG 1 cut(s) 604
TaaI ACNGT 3 cut(s) 62, 122, 467
TaqI TCGA 3 cut(s) 285, 408, 574
TasI AATT 5 cut(s) 4, 217, 227, 436, 545
TatI WGTACW 3 cut(s) 117, 144, 620
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 2 cut(s) 131, 442
Tru1I TTAA 6 cut(s) 104, 230, 272, 498, 506, 563
Tru9I TTAA 6 cut(s) 104, 230, 272, 498, 506, 563
TscAI CASTG 1 cut(s) 263
TseFI GTSAC 2 cut(s) 388, 474
Tsp45I GTSAC 2 cut(s) 388, 474
TspDTI ATGAA 4 cut(s) 17, 377, 381, 552
TspRI CASTG 1 cut(s) 263
XapI RAATTY 1 cut(s) 4
XbaI TCTAGA 1 cut(s) 301
XceI RCATGY 1 cut(s) 458
XhoI CTCGAG 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 2 cut(s) 302, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.