Rorug05G0109600

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0022186
Physical Location & Seq
Reverse (-)
9769928 .. 9773502
3575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0109600.1

Sequence Viewer

Length: 747 bp
ATGGAGGGAGGACTACATGTAGAGGCAGATTCATCAGCTTTCAGAGACTGTTTCTCTTTGGCATGGAAGAACCCATATGTTCTTCGTCTGGCCTTCTCTGCTGGAATTGGTGGCCTCCTCTTTGGCTATGACACAGGAGTTATATCAGGAGCTCTTCTTTACATCAGGGATGACTTCAAGTCTGTGGACAGAGAGACTGTCTTACAGAACATCGGAAGAAGAAGTGCAATCCTTATAGCAGATTTCCTATTCTTCATTGGTGCTGTGATCATGGCCTCAGCTCCTAACCCACCTCTTCTCATTGTTGGCCGTGTTTTTGTTGGACTTGGTGTTGGAATGGCATCAATGACAGCTCCCTTGTACATCTCGGAAGCGTCTCCTGCCAAAATCCGAGGTGCCCTTGTTAGTACCAATGGGTTTCTCATTACTGGTGGGCGGTTCCTGTCTTACCTCATCAATTTGTGTTTCACCAAGGCCCCGGGGACTTGGCGGTGGATGCTTGGTGTTGCAGGAATTCCAGCTCTTCTGCAGTTCATCCTAATGCTGCTTCTTCCAGAATATCCACGTTGGCTATTCCGAAAGGGGAAATCGGTTGCTGCTGTGACGAAAGAAGGGCTCGGAAGAACCACTTGGACTTTTCTCAACTCTTGCTGCTCAGGTAATGGAAATGGTTTGGCAGCTGGTTGGTTGTTTACAACTAAAAGCCCTGCCACGCACAGCTCCACCATAGCTGGCTGGCCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

248

Amino Acids

26.62

Weight (kDa)

9.48

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 69 - 200 4.3e-41 Sugar (and other) transporter
MFS_1 PF07690 69 - 232 9e-13 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022186)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g17170
rosa_rugosa Rorug05G0109600
rosa_samantha Rh5CG220100 Rh5DG202800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 395
AciI CCGC 2 cut(s) 436, 490
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 1 cut(s) 513
AfaI GTAC 2 cut(s) 362, 409
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 1 cut(s) 178
AhdI GACNNNNNGTC 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 613, 645
AluBI AGCT 8 cut(s) 38, 152, 281, 353, 521, 680, 720, 731
AluI AGCT 8 cut(s) 38, 152, 281, 353, 521, 680, 720, 731
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 3 cut(s) 39, 188, 381
AlwNI CAGNNNCTG 1 cut(s) 48
Ama87I CYCGRG 1 cut(s) 478
AoxI GGCC 6 cut(s) 90, 112, 273, 307, 474, 737
ApeKI GCWGC 4 cut(s) 544, 596, 651, 677
ApoI RAATTY 1 cut(s) 513
AspS9I GGNCC 1 cut(s) 475
AsuC2I CCSGG 2 cut(s) 479, 480
AsuHPI GGTGA 1 cut(s) 460
AvaI CYCGRG 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 2 cut(s) 154, 618
Bbv12I GWGCWC 1 cut(s) 154
BbvCI CCTCAGC 1 cut(s) 277
BbvI GCAGC 4 cut(s) 531, 583, 638, 689
BceAI ACGGC 1 cut(s) 294
BclI TGATCA 1 cut(s) 267
BcnI CCSGG 2 cut(s) 479, 480
BcoDI GTCTC 3 cut(s) 39, 188, 381
BfmI CTRYAG 1 cut(s) 527
BisI GCNGC 4 cut(s) 545, 597, 652, 678
BlsI GCNGC 4 cut(s) 546, 598, 653, 679
Bme1390I CCNGG 2 cut(s) 479, 480
BmeRI GACNNNNNGTC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 475
BmiI GGNNCC 3 cut(s) 397, 440, 477
BmrFI CCNGG 2 cut(s) 479, 480
BmsI GCATC 2 cut(s) 350, 486
Bpu10I CCTNAGC 2 cut(s) 277, 655
BpuMI CCSGG 2 cut(s) 479, 480
BsaJI CCNNGG 5 cut(s) 391, 471, 477, 478, 479
Bse1I ACTGG 1 cut(s) 433
BseDI CCNNGG 5 cut(s) 391, 471, 477, 478, 479
BseGI GGATG 3 cut(s) 175, 501, 534
BseMII CTCAG 2 cut(s) 291, 669
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 400
BseXI GCAGC 4 cut(s) 531, 583, 638, 689
BshFI GGCC 6 cut(s) 92, 114, 275, 309, 476, 739
BshNI GGYRCC 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 496
BsmAI GTCTC 3 cut(s) 39, 188, 381
BsmBI CGTCTC 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 6 cut(s) 92, 114, 275, 309, 476, 739
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 3 cut(s) 154, 400, 618
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 2 cut(s) 436, 490
BspANI GGCC 6 cut(s) 92, 114, 275, 309, 476, 739
BspCNI CTCAG 2 cut(s) 290, 668
BspLI GGNNCC 3 cut(s) 397, 440, 477
BspMAI CTGCAG 1 cut(s) 531
BspQI GCTCTTC 2 cut(s) 159, 528
BspT107I GGYRCC 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 360
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 5 cut(s) 391, 471, 477, 478, 479
BssMI GATC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 471
Bst4CI ACNGT 2 cut(s) 50, 199
Bst6I CTCTTC 3 cut(s) 159, 300, 528
BstAUI TGTACA 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 733, 737
BstDEI CTNAG 2 cut(s) 277, 655
BstF5I GGATG 3 cut(s) 175, 501, 534
BstKTI GATC 1 cut(s) 270
BstMAI GTCTC 3 cut(s) 39, 188, 381
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 3 cut(s) 98, 380, 496
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 477, 478
BstSFI CTRYAG 1 cut(s) 527
BstSLI GKGCMC 1 cut(s) 400
BstV1I GCAGC 4 cut(s) 531, 583, 638, 689
BsuRI GGCC 6 cut(s) 92, 114, 275, 309, 476, 739
BtsCI GGATG 3 cut(s) 175, 501, 534
Cac8I GCNNGC 2 cut(s) 733, 737
CaiI CAGNNNCTG 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 475
Cfr9I CCCGGG 1 cut(s) 478
CseI GACGC 1 cut(s) 363
Csp6I GTAC 2 cut(s) 361, 408
CviAII CATG 3 cut(s) 17, 63, 271
CviQI GTAC 2 cut(s) 361, 408
DdeI CTNAG 2 cut(s) 277, 655
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
DriI GACNNNNNGTC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 3 cut(s) 159, 300, 528
Eam1105I GACNNNNNGTC 1 cut(s) 178
EarI CTCTTC 3 cut(s) 159, 300, 528
Ecl136II GAGCTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 2 cut(s) 154, 618
Eco53kI GAGCTC 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 478
EcoICRI GAGCTC 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 475
EcoRI GAATTC 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 471
EcoT38I GRGCYC 2 cut(s) 154, 618
ErhI CCWWGG 1 cut(s) 471
Esp3I CGTCTC 1 cut(s) 381
FaeI CATG 3 cut(s) 20, 66, 274
FaiI YATR 9 cut(s) 18, 64, 76, 78, 129, 143, 236, 272, 728
FalI AAGNNNNNCTT 2 cut(s) 613, 645
FaqI GGGAC 1 cut(s) 496
FatI CATG 3 cut(s) 16, 62, 270
FauNDI CATATG 1 cut(s) 76
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 4 cut(s) 545, 597, 652, 678
FokI GGATG 3 cut(s) 182, 508, 521
FriOI GRGCYC 2 cut(s) 154, 618
Fsp4HI GCNGC 4 cut(s) 545, 597, 652, 678
GluI GCNGC 4 cut(s) 545, 597, 652, 678
HaeIII GGCC 6 cut(s) 92, 114, 275, 309, 476, 739
HapII CCGG 1 cut(s) 479
HgaI GACGC 1 cut(s) 363
Hin1II CATG 3 cut(s) 20, 66, 274
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 479
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 2 cut(s) 187, 693
Hpy188I TCNGA 6 cut(s) 44, 215, 370, 392, 578, 620
Hpy188III TCNNGA 2 cut(s) 147, 554
Hpy8I GTNNAC 2 cut(s) 187, 693
HpyAV CCTTC 2 cut(s) 103, 605
HpyCH4III ACNGT 2 cut(s) 50, 199
HpyCH4IV ACGT 1 cut(s) 565
HpyCH4V TGCA 3 cut(s) 227, 509, 529
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 380, 496
HpyF3I CTNAG 2 cut(s) 277, 655
HpySE526I ACGT 1 cut(s) 565
Hsp92II CATG 3 cut(s) 20, 66, 274
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 1 cut(s) 267
LguI GCTCTTC 2 cut(s) 159, 528
LmnI GCTCC 4 cut(s) 149, 286, 358, 725
Lsp1109I GCAGC 4 cut(s) 531, 583, 638, 689
LweI GCATC 2 cut(s) 350, 486
MaeII ACGT 1 cut(s) 565
MaeIII GTNAC 1 cut(s) 601
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MhlI GDGCHC 3 cut(s) 154, 400, 618
MluCI AATT 3 cut(s) 105, 457, 513
MmeI TCCRAC 2 cut(s) 301, 313
MnlI CCTC 7 cut(s) 16, 125, 128, 286, 303, 386, 461
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 680
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 2 cut(s) 479, 480
MwoI GCNNNNNNNGC 3 cut(s) 98, 380, 496
NciI CCSGG 2 cut(s) 479, 480
NdeI CATATG 1 cut(s) 76
NdeII GATC 1 cut(s) 267
NlaIII CATG 3 cut(s) 20, 66, 274
NlaIV GGNNCC 3 cut(s) 397, 440, 477
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 1 cut(s) 20
PciI ACATGT 1 cut(s) 16
PciSI GCTCTTC 2 cut(s) 159, 528
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 4 cut(s) 546, 598, 653, 679
PscI ACATGT 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 397, 440, 477
PspPI GGNCC 1 cut(s) 475
PstI CTGCAG 1 cut(s) 531
PstNI CAGNNNCTG 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 2 cut(s) 362, 409
RsaNI GTAC 2 cut(s) 361, 408
RseI CAYNNNNRTG 1 cut(s) 539
SacI GAGCTC 1 cut(s) 154
SapI GCTCTTC 2 cut(s) 159, 528
SatI GCNGC 4 cut(s) 545, 597, 652, 678
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 475
ScrFI CCNGG 2 cut(s) 479, 480
SduI GDGCHC 3 cut(s) 154, 400, 618
SfaNI GCATC 2 cut(s) 350, 486
SfcI CTRYAG 1 cut(s) 527
SmaI CCCGGG 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 539
Sse9I AATT 3 cut(s) 105, 457, 513
SsiI CCGC 2 cut(s) 436, 490
SstI GAGCTC 1 cut(s) 154
StyD4I CCNGG 2 cut(s) 477, 478
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 2 cut(s) 50, 199
TaiI ACGT 1 cut(s) 568
TasI AATT 3 cut(s) 105, 457, 513
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 1 cut(s) 29
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 4 cut(s) 544, 596, 651, 677
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 3 cut(s) 21, 244, 523
TspMI CCCGGG 1 cut(s) 478
XapI RAATTY 1 cut(s) 513
XceI RCATGY 1 cut(s) 20
XmaI CCCGGG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.