Rh5DG202800

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0022186
Physical Location & Seq
Forward (+)
22400474 .. 22402931
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG202800.1

Sequence Viewer

Length: 276 bp
ATGGAAGCGGAGGTGATTAAAATTCCTGAGAAAAAAGAGAAGGTGATTGAACTTACTGACAAAGAAGCGCTAGTGATTGACCTTACAAAGTTGGCAAAAGTGCTGAATTGGATTCCACCGGAGTCTATTCCTAACTGTTTATCGTCACGCCTGAAGACTATCTCCATTAAGGGATTGAAGGGAAAGGGATACATTGGATATCTTGACCAGATGGAATTGACCAAGTATTTGTTAAAAAATGGTCGAGTTTTGGAGGACATCGATGACTATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

91

Amino Acids

10.38

Weight (kDa)

6.28

Isoelectric Point (pI)

12.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 40 - 85 2.3e-10 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022186)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g17170
rosa_rugosa Rorug05G0109600
rosa_samantha Rh5CG220100 Rh5DG202800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 173
AfeI AGCGCT 1 cut(s) 69
AgsI TTSAA 2 cut(s) 50, 178
Aor51HI AGCGCT 1 cut(s) 69
ApoI RAATTY 1 cut(s) 21
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AspLEI GCGC 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 25, 55
BbsI GAAGAC 1 cut(s) 161
BccI CCATC 1 cut(s) 205
BciVI GTATCC 1 cut(s) 182
BfaI CTAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 71
BfuI GTATCC 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 118
BseCI ATCGAT 1 cut(s) 261
BseMII CTCAG 1 cut(s) 18
BshVI ATCGAT 1 cut(s) 261
BsiSI CCGG 1 cut(s) 119
BspACI CCGC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 19
BspDI ATCGAT 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 161
Bsu15I ATCGAT 1 cut(s) 261
BsuI GTATCC 1 cut(s) 182
BsuTUI ATCGAT 1 cut(s) 261
CfoI GCGC 1 cut(s) 70
ClaI ATCGAT 1 cut(s) 261
DdeI CTNAG 1 cut(s) 27
Eco32I GATATC 1 cut(s) 200
Eco47III AGCGCT 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 173
EcoRV GATATC 1 cut(s) 200
FaiI YATR 1 cut(s) 274
FspBI CTAG 1 cut(s) 71
GlaI GCGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 71
HapII CCGG 1 cut(s) 119
HhaI GCGC 1 cut(s) 70
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 2 cut(s) 112, 122
HpaII CCGG 1 cut(s) 119
HphI GGTGA 2 cut(s) 25, 55
Hpy188III TCNNGA 2 cut(s) 26, 203
HpyAV CCTTC 2 cut(s) 34, 172
HpyCH4III ACNGT 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 27
HspAI GCGC 1 cut(s) 68
LpnPI CCDG 4 cut(s) 39, 132, 164, 221
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 144
MboII GAAGA 1 cut(s) 166
MluCI AATT 3 cut(s) 21, 106, 215
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 2 cut(s) 4, 247
MseI TTAA 3 cut(s) 18, 168, 233
MspI CCGG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 112
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
SaqAI TTAA 3 cut(s) 18, 168, 233
SchI GAGTC 1 cut(s) 131
SetI ASST 3 cut(s) 15, 45, 84
SgeI CNNG 9 cut(s) 38, 83, 131, 159, 163, 215, 220, 235, 257
Sse9I AATT 3 cut(s) 21, 106, 215
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 137
TaqI TCGA 2 cut(s) 244, 261
TasI AATT 3 cut(s) 21, 106, 215
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 3 cut(s) 18, 168, 233
Tru9I TTAA 3 cut(s) 18, 168, 233
TseFI GTSAC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 144
XapI RAATTY 1 cut(s) 21
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.