Rh5CG220100

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0022186
Physical Location & Seq
Forward (+)
22383984 .. 22389860
5877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG220100.1

Sequence Viewer

Length: 582 bp
ATGGTGAAATATCTGTCTCTCTCATGGAGCATATTTCAGGCTTGCTCTGTGCCTGCATTTGATAATTTGATCAAACTGAGGCTGGTTCATTTTGGCGGCTCTCACTGGTGGAAAACACTAATGAAGTTGCTCGAGAGATCACCTAATCTAGAATGTCTTGTAATAGACCACCAGATTCATCCAACCCGAAGACAAGTGGAAGTGGAGGTGATTGAACTTCCTGAGAAAGAAGAGGAGGTGATTGAACATACTGGATATGAAGTGTCATTGATTGAAGTTACAAAGTACACAAAAGTGCTGAACTGGATTCCACCAAACTCTGTTCGCAACTGTTTGCTGTCGCACTTAAAGACCATCTCCATAAGGGGATTCAGGGGAAAGGGTTGCAATGGATATCTAGACGAGATGGAATTGACCAAGTATCTGTTAAAGAATGGTCGAGTTTTGGAGAAGATGGTTATTTATACTCCTGGTGCATTTCGAGATACAAAAGAGGATATCTTCAACGAAACTTCTATGATTGAATGGAGTTCTAAGGTTGTTCAAGTTGAAATTATTGAGAAGATGTTTTATGGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

193

Amino Acids

22.54

Weight (kDa)

6.32

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 105 - 154 1.4e-13 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022186)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g17170
rosa_rugosa Rorug05G0109600
rosa_samantha Rh5CG220100 Rh5DG202800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AfaI GTAC 1 cut(s) 287
AgsI TTSAA 7 cut(s) 215, 245, 275, 505, 524, 545, 551
AjnI CCWGG 1 cut(s) 469
AleI CACNNNNGTG 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 21
Ama87I CYCGRG 1 cut(s) 131
AsuHPI GGTGA 4 cut(s) 16, 132, 220, 250
AvaI CYCGRG 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 196
BccI CCATC 3 cut(s) 362, 400, 448
BciT130I CCWGG 1 cut(s) 471
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 2 cut(s) 149, 398
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 471
BmeT110I CYCGRG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 196
Bse1I ACTGG 3 cut(s) 110, 256, 308
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 1 cut(s) 471
BseGI GGATG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 2 cut(s) 68, 213
BseNI ACTGG 3 cut(s) 110, 256, 308
BseRI GAGGAG 1 cut(s) 248
BsiHKCI CYCGRG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 21
BsoBI CYCGRG 1 cut(s) 131
Bsp143I GATC 2 cut(s) 69, 137
BspACI CCGC 1 cut(s) 96
BspCNI CTCAG 2 cut(s) 69, 214
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 3 cut(s) 110, 256, 308
BssMI GATC 2 cut(s) 69, 137
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 43, 54
BstDEI CTNAG 3 cut(s) 77, 222, 534
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 2 cut(s) 72, 140
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 2 cut(s) 69, 137
BstNI CCWGG 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 43, 54
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 24
CviJI RGCY 3 cut(s) 41, 82, 99
CviKI_1 RGCY 3 cut(s) 41, 82, 99
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 3 cut(s) 77, 222, 534
DpnI GATC 2 cut(s) 71, 139
DpnII GATC 2 cut(s) 69, 137
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco32I GATATC 2 cut(s) 395, 499
Eco88I CYCGRG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 469
EcoRV GATATC 2 cut(s) 395, 499
FaeI CATG 1 cut(s) 27
FaiI YATR 8 cut(s) 25, 32, 249, 258, 362, 465, 518, 573
FatI CATG 1 cut(s) 23
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 2 cut(s) 149, 398
GluI GCNGC 1 cut(s) 97
Hin1II CATG 1 cut(s) 27
HinfI GANTC 3 cut(s) 175, 307, 369
HphI GGTGA 4 cut(s) 16, 132, 220, 250
Hpy166II GTNNAC 1 cut(s) 288
Hpy188III TCNNGA 5 cut(s) 133, 149, 221, 398, 482
Hpy8I GTNNAC 1 cut(s) 288
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 3 cut(s) 56, 387, 476
HpyF3I CTNAG 3 cut(s) 77, 222, 534
Hsp92II CATG 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 2 cut(s) 69, 137
LmnI GCTCC 1 cut(s) 27
MaeI CTAG 2 cut(s) 149, 398
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 71, 139
MboI GATC 2 cut(s) 69, 137
MboII GAAGA 5 cut(s) 201, 242, 463, 493, 574
MluCI AATT 3 cut(s) 64, 410, 552
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 5 cut(s) 72, 199, 226, 229, 487
MseI TTAA 2 cut(s) 347, 428
MslI CAYNNNNRTG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 471
NdeII GATC 2 cut(s) 69, 137
NlaIII CATG 1 cut(s) 27
OliI CACNNNNGTG 1 cut(s) 293
PaeR7I CTCGAG 1 cut(s) 131
PfeI GAWTC 3 cut(s) 175, 307, 369
PkrI GCNGC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 2 cut(s) 347, 428
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 2 cut(s) 69, 137
ScrFI CCNGG 1 cut(s) 471
SetI ASST 4 cut(s) 145, 210, 240, 540
Sfr274I CTCGAG 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 64, 410, 552
SsiI CCGC 1 cut(s) 96
SspMI CTAG 2 cut(s) 149, 398
StyD4I CCNGG 1 cut(s) 469
TaaI ACNGT 1 cut(s) 332
TaqI TCGA 3 cut(s) 132, 439, 481
TasI AATT 3 cut(s) 64, 410, 552
TatI WGTACW 1 cut(s) 285
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 3 cut(s) 175, 307, 369
Tru1I TTAA 2 cut(s) 347, 428
Tru9I TTAA 2 cut(s) 347, 428
TscAI CASTG 1 cut(s) 110
TspDTI ATGAA 4 cut(s) 77, 137, 167, 273
TspRI CASTG 1 cut(s) 110
XbaI TCTAGA 2 cut(s) 148, 397
XhoI CTCGAG 1 cut(s) 131
XspI CTAG 2 cut(s) 149, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.