Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0017155

Physical Location & Seq

Genomic Coordinates Forward (+)

11424375 .. 11425097

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17941.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCTAGATAATTCAGATTCCTTGTTCGATTCGGATTACTTTCCTTACTACTTACACACAATGACGAGGGGCATCTACCTCACAGTTATCCAGGAGGTGATCAACAAGGTTAGACCAGAGTTCATCAATGGCCCCGGAGAAGAACAACTCATGCATCTTCAAGCAACTTGGGAGAGCAAGATGATGCTAGCCGGTGTTGTAGGTACGCCTGCTGTGGATCTCAATGTACCAGTGTTCCCCTCATCACCGTTACGAGCTCCGGTTCAACCGCAACCGCAACAGCCTCTGCCGGGAACTGGAGACAACATGTATAATACTTCTACTGGAGTACCATACTGTCCATACATGCAACCTCCTTATCATGGCATGACTTCTCAAACATATCAGACAGTTGGTGGAGTTGGAGAGTTTGTGAAACTTGAGGATTGTACTTCTGTGAAGGTAGAAGGGGATGATGATGAGCCCCCATTGAATCAAGACGACGATGATCTGGATGATGTGGAGGGAGAGGAGGATATGAACACACAGAATTTGGTGTTGGCTCAGTTTGAGAAGGGGACACACACAAAGAGCAAGTGGAAGTGCATCCTCAAGAATCGCATTATGCACATGAACAATAAGGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000976 GO:0000977 GO:0000979 GO:0001012 GO:0001046 GO:0001047 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019438 GO:0022607 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA

Protein Analysis

210

Amino Acids

23.49

Weight (kDa)

4.43

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIA	PF03153	25 - 94	1.5e-07	Transcription factor IIA, alpha/beta subunit
TFIIA	PF03153	147 - 208	2.9e-13	Transcription factor IIA, alpha/beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59230
fragaria_vesca	FvH4_3g17941
rosa_chinensis	RchiOBHm_Chr5g0029921 RchiOBHm_Chr5g0029991 RchiOBHm_Chr5g0030001
rosa_laevigata	RLG00000033202
rosa_multiflora	Rmu_co8060810.1_g000001 Rmu_sc0003368.1_g000023
rosa_samantha	Rh5AG209200 Rh5BG207900 Rh5CG231300 Rh5DG212100
rosa_wichuraiana	Rw5G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	269, 275
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	529
AfaI	GTAC	4 cut(s)	205, 228, 330, 430
AfiI	CCNNNNNNNGG	3 cut(s)	290, 296, 362
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	161, 266, 472
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	521, 553
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	286
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	131
AsuC2I	CCSGG	2 cut(s)	135, 291
AsuHPI	GGTGA	2 cut(s)	109, 237
AsuNHI	GCTAGC	1 cut(s)	187
BaeI	ACNNNNGTAYC	2 cut(s)	312, 345
BanII	GRGCYC	2 cut(s)	259, 465
Bbv12I	GWGCWC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	92
BclI	TGATCA	1 cut(s)	99
BcnI	CCSGG	2 cut(s)	135, 291
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	2 cut(s)	5, 188
Bme1390I	CCNGG	3 cut(s)	92, 135, 291
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	3 cut(s)	92, 135, 291
BmsI	GCATC	4 cut(s)	81, 163, 174, 594
BmtI	GCTAGC	1 cut(s)	191
BpmI	CTGGAG	2 cut(s)	318, 345
BpuEI	CTTGAG	2 cut(s)	440, 575
BpuMI	CCSGG	2 cut(s)	135, 291
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 296, 362
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	3 cut(s)	230, 301, 328
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	4 cut(s)	457, 499, 585, 628
BseLI	CCNNNNNNNGG	3 cut(s)	290, 296, 362
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	3 cut(s)	230, 301, 328
BseRI	GAGGAG	1 cut(s)	524
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	4 cut(s)	135, 192, 260, 290
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	3 cut(s)	290, 296, 362
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	259, 465
Bsp143I	GATC	3 cut(s)	99, 217, 487
BspACI	CCGC	2 cut(s)	269, 275
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	133
BspOI	GCTAGC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	3 cut(s)	230, 301, 328
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	3 cut(s)	99, 217, 487
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	4 cut(s)	85, 249, 338, 391
BstC8I	GCNNGC	2 cut(s)	189, 210
BstDEI	CTNAG	1 cut(s)	543
BstF5I	GGATG	4 cut(s)	457, 499, 585, 628
BstKTI	GATC	3 cut(s)	102, 220, 490
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	3 cut(s)	99, 217, 487
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	2 cut(s)	310, 349
BstSCI	CCNGG	3 cut(s)	90, 133, 289
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	4 cut(s)	457, 499, 585, 628
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	189, 210
CaiI	CAGNNNCTG	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	4 cut(s)	204, 227, 329, 429
CviAII	CATG	6 cut(s)	151, 307, 346, 362, 367, 610
CviJI	RGCY	6 cut(s)	132, 191, 257, 283, 463, 542
CviKI_1	RGCY	6 cut(s)	132, 191, 257, 283, 463, 542
CviQI	GTAC	4 cut(s)	204, 227, 329, 429
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	3 cut(s)	101, 219, 489
DpnII	GATC	3 cut(s)	99, 217, 487
Ecl136II	GAGCTC	1 cut(s)	257
Eco24I	GRGCYC	2 cut(s)	259, 465
Eco53kI	GAGCTC	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	156
EcoT38I	GRGCYC	2 cut(s)	259, 465
FaeI	CATG	6 cut(s)	154, 310, 349, 365, 370, 613
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	6 cut(s)	150, 306, 345, 361, 366, 609
FbaI	TGATCA	1 cut(s)	99
FokI	GGATG	3 cut(s)	464, 506, 572
FriOI	GRGCYC	2 cut(s)	259, 465
FspBI	CTAG	2 cut(s)	5, 188
GsuI	CTGGAG	2 cut(s)	318, 345
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	4 cut(s)	135, 192, 260, 290
Hin1II	CATG	6 cut(s)	154, 310, 349, 365, 370, 613
HinfI	GANTC	4 cut(s)	17, 29, 472, 595
HpaII	CCGG	4 cut(s)	135, 192, 260, 290
HphI	GGTGA	2 cut(s)	109, 237
Hpy188I	TCNGA	3 cut(s)	16, 34, 387
Hpy188III	TCNNGA	3 cut(s)	476, 491, 592
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	3 cut(s)	433, 440, 547
HpyCH4III	ACNGT	4 cut(s)	85, 249, 338, 391
HpyCH4V	TGCA	4 cut(s)	154, 349, 585, 607
HpyF3I	CTNAG	1 cut(s)	543
Hsp92II	CATG	6 cut(s)	154, 310, 349, 365, 370, 613
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	99, 217, 487
LmnI	GCTCC	1 cut(s)	262
LweI	GCATC	4 cut(s)	81, 163, 174, 594
MaeI	CTAG	2 cut(s)	5, 188
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	3 cut(s)	101, 219, 489
MboI	GATC	3 cut(s)	99, 217, 487
MboII	GAAGA	2 cut(s)	149, 152
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	2 cut(s)	259, 465
MluCI	AATT	2 cut(s)	10, 529
MmeI	TCCRAC	1 cut(s)	382
Mph1103I	ATGCAT	1 cut(s)	156
MspI	CCGG	4 cut(s)	135, 192, 260, 290
MspR9I	CCNGG	3 cut(s)	92, 135, 291
MvaI	CCWGG	1 cut(s)	92
NciI	CCSGG	2 cut(s)	135, 291
NdeII	GATC	3 cut(s)	99, 217, 487
NheI	GCTAGC	1 cut(s)	187
NlaIII	CATG	6 cut(s)	154, 310, 349, 365, 370, 613
NlaIV	GGNNCC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	156
NspI	RCATGY	2 cut(s)	310, 349
PciI	ACATGT	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	17, 29, 472, 595
PfoI	TCCNGGA	1 cut(s)	90
PscI	ACATGT	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	131
PstNI	CAGNNNCTG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	4 cut(s)	205, 228, 330, 430
RsaNI	GTAC	4 cut(s)	204, 227, 329, 429
SacI	GAGCTC	1 cut(s)	259
Sau3AI	GATC	3 cut(s)	99, 217, 487
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	3 cut(s)	92, 135, 291
SduI	GDGCHC	2 cut(s)	259, 465
SetI	ASST	7 cut(s)	81, 99, 111, 205, 259, 355, 444
SfaNI	GCATC	4 cut(s)	81, 163, 174, 594
SmlI	CTYRAG	2 cut(s)	419, 590
SmoI	CTYRAG	2 cut(s)	419, 590
Sse9I	AATT	2 cut(s)	10, 529
SsiI	CCGC	2 cut(s)	269, 275
SspMI	CTAG	2 cut(s)	5, 188
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	3 cut(s)	90, 133, 289
TaaI	ACNGT	4 cut(s)	85, 249, 338, 391
TaqI	TCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	10, 529
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	4 cut(s)	17, 29, 472, 595
TscAI	CASTG	1 cut(s)	237
TspDTI	ATGAA	3 cut(s)	112, 533, 626
TspRI	CASTG	1 cut(s)	237
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	2 cut(s)	310, 349
XspI	CTAG	2 cut(s)	5, 188
Zsp2I	ATGCAT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.