Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017155

Physical Location & Seq

Genomic Coordinates Forward (+)

23799514 .. 23799960

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGACAAGCGGTGTCGTCTACCTGAATGTTATCCAGGATGTGATTAACAAGGTCAGACCAGAGTTCATAGATGACCCCGGAGAAAAACTACTCATGCAGCTTCAAGCAACTTGGGAGGCCAAGATGATGCAAGCCGGTGTTGTTGGTACGCCTGCTGTGGATCTCAATGTACCATGTACCAGTGTTCCCCCCATTACCGTTACACGTTCCAGTTCAACCACAACCGCCTCTACCGGAAACTGGAGACAACTTGTTCAATACTATTCCTACCGGAGCACCATACATGCAACCTCCTTATCCTTGGATTACCTCTCAAACATATCAGACCGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000976 GO:0000977 GO:0000979 GO:0001012 GO:0001046 GO:0001047 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019438 GO:0022607 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA

Protein Analysis

111

Amino Acids

12.33

Weight (kDa)

5.63

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIA	PF03153	6 - 71	1.2e-08	Transcription factor IIA, alpha/beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59230
fragaria_vesca	FvH4_3g17941
rosa_chinensis	RchiOBHm_Chr5g0029921 RchiOBHm_Chr5g0029991 RchiOBHm_Chr5g0030001
rosa_laevigata	RLG00000033202
rosa_multiflora	Rmu_co8060810.1_g000001 Rmu_sc0003368.1_g000023
rosa_samantha	Rh5AG209200 Rh5BG207900 Rh5CG231300 Rh5DG212100
rosa_wichuraiana	Rw5G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	3 cut(s)	9, 225, 328
AclWI	GGATC	1 cut(s)	168
AfaI	GTAC	3 cut(s)	148, 171, 178
AfiI	CCNNNNNNNGG	1 cut(s)	240
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	104, 216, 257
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	35
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	238
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	2 cut(s)	35, 78
BmrFI	CCNGG	2 cut(s)	35, 78
BmsI	GCATC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	76, 300
BsaWI	WCCGGW	2 cut(s)	233, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	3 cut(s)	180, 210, 245
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	76, 300
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseNI	ACTGG	3 cut(s)	180, 210, 245
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	4 cut(s)	78, 135, 234, 271
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	3 cut(s)	9, 225, 328
BspANI	GGCC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	180, 210, 245
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	76, 300
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	132, 153
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	33, 76
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	132, 153
Cfr10I	RCCGGY	1 cut(s)	134
Csp6I	GTAC	3 cut(s)	147, 170, 177
CviAII	CATG	3 cut(s)	94, 174, 284
CviJI	RGCY	3 cut(s)	100, 119, 134
CviKI_1	RGCY	3 cut(s)	100, 119, 134
CviQI	GTAC	3 cut(s)	147, 170, 177
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	3 cut(s)	97, 177, 287
FaiI	YATR	6 cut(s)	68, 95, 175, 281, 285, 320
FatI	CATG	3 cut(s)	93, 173, 283
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	4 cut(s)	78, 135, 234, 271
Hin1II	CATG	3 cut(s)	97, 177, 287
HpaII	CCGG	4 cut(s)	78, 135, 234, 271
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	56, 325
Hpy8I	GTNNAC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	97, 130, 287
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	3 cut(s)	97, 177, 287
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	273
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	117
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	278
MnlI	CCTC	4 cut(s)	109, 238, 301, 320
MseI	TTAA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	4 cut(s)	78, 135, 234, 271
MspR9I	CCNGG	2 cut(s)	35, 78
MvaI	CCWGG	1 cut(s)	35
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	3 cut(s)	97, 177, 287
NspI	RCATGY	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	3 cut(s)	148, 171, 178
RsaNI	GTAC	3 cut(s)	147, 170, 177
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	35, 78
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	6 cut(s)	24, 54, 102, 208, 293, 312
SfaNI	GCATC	1 cut(s)	117
SsiI	CCGC	3 cut(s)	9, 225, 328
StyD4I	CCNGG	2 cut(s)	33, 76
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	187
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.