Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017155

Physical Location & Seq

Genomic Coordinates Forward (+)

23799972 .. 23800155

Gene Structure 184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGATTTGGATGATGTGGAGGAGGGAAAGGAGGAGCATGAACACACAGAATTTGGTGTTGGCTCAGTTTGAGAAGGTGAAACGCACAAAGAGCAAGTGGAAGTGCACCCTCAAGGATGGCATTATGCACATGAACAATAGGGATATCCTCTTTAATAAGGCCACAGGAGATTTTGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000976 GO:0000977 GO:0000979 GO:0001012 GO:0001046 GO:0001047 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019438 GO:0022607 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA

Protein Analysis

60

Amino Acids

7.4

Weight (kDa)

10.37

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIA	PF03153	15 - 59	6.1e-23	Transcription factor IIA, alpha/beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59230
fragaria_vesca	FvH4_3g17941
rosa_chinensis	RchiOBHm_Chr5g0029921 RchiOBHm_Chr5g0029991 RchiOBHm_Chr5g0030001
rosa_laevigata	RLG00000033202
rosa_multiflora	Rmu_co8060810.1_g000001 Rmu_sc0003368.1_g000023
rosa_samantha	Rh5AG209200 Rh5BG207900 Rh5CG231300 Rh5DG212100
rosa_wichuraiana	Rw5G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	49
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
Alw21I	GWGCWC	1 cut(s)	107
Alw44I	GTGCAC	1 cut(s)	103
AoxI	GGCC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	107
BccI	CCATC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	95
BseGI	GGATG	2 cut(s)	15, 121
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	34, 46
BseSI	GKGCMC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	107
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	15, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	15, 121
CviAII	CATG	2 cut(s)	37, 130
CviJI	RGCY	2 cut(s)	62, 161
CviKI_1	RGCY	2 cut(s)	62, 161
DdeI	CTNAG	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	145
EcoRV	GATATC	1 cut(s)	145
FaeI	CATG	2 cut(s)	40, 133
FaiI	YATR	3 cut(s)	38, 125, 131
FatI	CATG	2 cut(s)	36, 129
FokI	GGATG	2 cut(s)	22, 128
HaeIII	GGCC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	40, 133
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	105, 127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	40, 133
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	5 cut(s)	12, 15, 24, 119, 158
MseI	TTAA	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	90
NlaIII	CATG	2 cut(s)	40, 133
SaqAI	TTAA	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	1 cut(s)	78
SgeI	CNNG	5 cut(s)	49, 106, 124, 142, 177
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	49
TasI	AATT	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TspDTI	ATGAA	2 cut(s)	53, 146
VneI	GTGCAC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.