Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017155

Physical Location & Seq

Genomic Coordinates Forward (+)

24430967 .. 24431602

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033202

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGACGAGCGGTGTCGTCTACCTGAATGTTGTTCAGGATGTGATCAACAAGGTCAGACCAGAGTTCATCGATGGCCCCGGAGAAAAACTACTCGTGCAGCTTCAAGCAACTTGGGAGGCCAAGATGATGCAAGCCAGTGTTGTTGGTACGCCTGCTGTGGATCTCAATGTACCAGTGTTCCCCCAATTACCGTTACACGTTCCGGTTCAACTACAACCGCCTCTACCGGCAACTGGAGAAAACTTGTATGACACTATTCCTACGGGAGCACCATTCATGCAACCTCCTTATCCTCGGATGACCTCTCAAACATATCAGACCGCTGGTGACGGGTTTATAACCCAGCAAGTTGGAGCCGGAGAGGTCTTTAAGATTGAGGATAGTGGAGGGAGCAGTAGTACTTCTGCGAAGGTAGAGGGGAATGATGAGCCCCCACTGAATGAAGATGACGACGATGATTTGGATGATGTGGAGGAGGGAGAGGAGGAGCTGAACACACAGAATTTGGTGTTGGCTCAGTTTGAGAAGGTGAAACGCACAAAGAGCAAGTGGAAGTGCACCCTCAAGGATGGCATTATGCACATGAACAATAGGGATATCCTCTTCAATAAGGCCGCAGGAGATTTTGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000976 GO:0000977 GO:0000979 GO:0001012 GO:0001046 GO:0001047 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019438 GO:0022607 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA

Protein Analysis

212

Amino Acids

23.2

Weight (kDa)

4.32

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIA	PF03153	6 - 105	6.9e-08	Transcription factor IIA, alpha/beta subunit
TFIIA	PF03153	131 - 210	1.5e-28	Transcription factor IIA, alpha/beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59230
fragaria_vesca	FvH4_3g17941
rosa_chinensis	RchiOBHm_Chr5g0029921 RchiOBHm_Chr5g0029991 RchiOBHm_Chr5g0030001
rosa_laevigata	RLG00000033202
rosa_multiflora	Rmu_co8060810.1_g000001 Rmu_sc0003368.1_g000023
rosa_samantha	Rh5AG209200 Rh5BG207900 Rh5CG231300 Rh5DG212100
rosa_wichuraiana	Rw5G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	4 cut(s)	9, 218, 321, 615
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	502
AfaI	GTAC	3 cut(s)	148, 171, 400
AfiI	CCNNNNNNNGG	1 cut(s)	233
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	104, 209, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	2 cut(s)	100, 490
AluI	AGCT	2 cut(s)	100, 490
Alw21I	GWGCWC	2 cut(s)	271, 560
Alw44I	GTGCAC	1 cut(s)	556
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	3 cut(s)	73, 117, 612
ApaLI	GTGCAC	1 cut(s)	556
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	502
AspS9I	GGNCC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	338, 541
BaeGI	GKGCMC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	432
BauI	CACGAG	1 cut(s)	92
Bbv12I	GWGCWC	2 cut(s)	271, 560
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	2 cut(s)	65, 563
BclI	TGATCA	1 cut(s)	42
BcnI	CCSGG	1 cut(s)	78
BisI	GCNGC	2 cut(s)	98, 615
BlsI	GCNGC	2 cut(s)	99, 616
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	76, 355
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	548
BpuMI	CCSGG	1 cut(s)	78
Bsa29I	ATCGAT	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	76, 293
BsaWI	WCCGGW	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	3 cut(s)	135, 173, 238
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	76, 293
BseGI	GGATG	4 cut(s)	43, 303, 469, 574
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	3 cut(s)	135, 173, 238
BseRI	GAGGAG	3 cut(s)	488, 497, 500
BseSI	GKGCMC	1 cut(s)	560
BseXI	GCAGC	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	342
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	3 cut(s)	75, 119, 614
BshVI	ATCGAT	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	271, 560
BsiSI	CCGG	4 cut(s)	78, 203, 227, 357
BslI	CCNNNNNNNGG	1 cut(s)	233
BsnI	GGCC	3 cut(s)	75, 119, 614
Bsp1286I	GDGCHC	3 cut(s)	271, 432, 560
Bsp143I	GATC	2 cut(s)	42, 160
BspACI	CCGC	4 cut(s)	9, 218, 321, 615
BspANI	GGCC	3 cut(s)	75, 119, 614
BspCNI	CTCAG	1 cut(s)	529
BspDI	ATCGAT	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	76, 355
BspPI	GGATC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	3 cut(s)	135, 173, 238
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	76, 293
BssMI	GATC	2 cut(s)	42, 160
BssSI	CACGAG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	132, 153
BstDEI	CTNAG	1 cut(s)	516
BstF5I	GGATG	4 cut(s)	43, 303, 469, 574
BstKTI	GATC	2 cut(s)	45, 163
BstMBI	GATC	2 cut(s)	42, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	560
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	160
BstXI	CCANNNNNNTGG	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	160
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	75, 119, 614
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	4 cut(s)	43, 303, 469, 574
BtsIMutI	CAGTG	3 cut(s)	142, 180, 434
Cac8I	GCNNGC	2 cut(s)	132, 153
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	74
ClaI	ATCGAT	1 cut(s)	69
Csp6I	GTAC	3 cut(s)	147, 170, 399
CviAII	CATG	2 cut(s)	277, 583
CviJI	RGCY	9 cut(s)	75, 100, 119, 134, 356, 430, 490, 515, 614
CviKI_1	RGCY	9 cut(s)	75, 100, 119, 134, 356, 430, 490, 515, 614
CviQI	GTAC	3 cut(s)	147, 170, 399
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	2 cut(s)	44, 162
DpnII	GATC	2 cut(s)	42, 160
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	432
FaeI	CATG	2 cut(s)	280, 586
FaiI	YATR	6 cut(s)	249, 278, 313, 338, 578, 584
FatI	CATG	2 cut(s)	276, 582
FbaI	TGATCA	1 cut(s)	42
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	98, 615
FokI	GGATG	4 cut(s)	50, 310, 476, 581
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	2 cut(s)	98, 615
GluI	GCNGC	2 cut(s)	98, 615
GsaI	CCCAGC	1 cut(s)	346
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	75, 119, 614
HapII	CCGG	4 cut(s)	78, 203, 227, 357
Hin1II	CATG	2 cut(s)	280, 586
HpaII	CCGG	4 cut(s)	78, 203, 227, 357
HphI	GGTGA	2 cut(s)	338, 541
Hpy166II	GTNNAC	2 cut(s)	19, 558
Hpy188I	TCNGA	4 cut(s)	56, 297, 318, 635
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	2 cut(s)	19, 558
Hpy99I	CGWCG	1 cut(s)	455
HpyAV	CCTTC	2 cut(s)	403, 520
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	5 cut(s)	97, 130, 280, 558, 580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	543
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	280, 586
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	42, 160
LmnI	GCTCC	4 cut(s)	266, 353, 390, 487
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	117
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	192, 326
MalI	GATC	2 cut(s)	44, 162
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	2 cut(s)	42, 160
MboII	GAAGA	2 cut(s)	455, 595
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	3 cut(s)	271, 432, 560
MluCI	AATT	2 cut(s)	185, 502
MmeI	TCCRAC	1 cut(s)	331
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	4 cut(s)	78, 203, 227, 357
MspR9I	CCNGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	543
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	42, 160
NlaIII	CATG	2 cut(s)	280, 586
NlaIV	GGNNCC	2 cut(s)	76, 355
NmuCI	GTSAC	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	99, 616
PsiI	TTATAA	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	76, 355
PspPI	GGNCC	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	3 cut(s)	148, 171, 400
RsaNI	GTAC	3 cut(s)	147, 170, 399
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	98, 615
Sau3AI	GATC	2 cut(s)	42, 160
Sau96I	GGNCC	1 cut(s)	74
ScaI	AGTACT	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	3 cut(s)	271, 432, 560
SfaNI	GCATC	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	2 cut(s)	185, 502
SsiI	CCGC	4 cut(s)	9, 218, 321, 615
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	69
TasI	AATT	2 cut(s)	185, 502
TatI	WGTACW	1 cut(s)	398
TauI	GCSGC	1 cut(s)	617
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	3 cut(s)	142, 180, 441
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	4 cut(s)	55, 265, 456, 599
TspRI	CASTG	3 cut(s)	142, 180, 441
VneI	GTGCAC	1 cut(s)	556
XapI	RAATTY	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.