FvH4_3g19660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0021043
Physical Location & Seq
Reverse (-)
12790648 .. 12791774
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19660.t1

Sequence Viewer

Length: 429 bp
ATGGCAGCAAGTTCATCTTTGTCCAAGAGATCTATCTTCAACATCTCGAAGTCTTTCCTCAAAGAGCATCCTTCTTCTTCGGTTCAGTCTTTGTTATCCAGGGCTTGCTCCTCGACTTCTTATGAACGTGCCCAAGATCCGGGAAACAGGACACCACTCGAGACACGAGAACACGAACGAGATGTCACCATTGATAACATGAGTGGGGTTACAGGATTTGTAGCAGATGCTGTGAGAGATGGTGCAGCGAAAACAACCGAGGTGGCGGAGGACCTGGTAGACTTGGCAAAAGAGACGATGGACAGTGCTTATGATAATACCAAGAAGACGACAAAAAAGGTCTCGGAGACGTTAGTTGCTGAGGCTGATGAGAATGTTGTTGACACGAGCGAGTATAGGAGTATTGAGGATCTTTCTAAGCATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.56

Weight (kDa)

5.09

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021043)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g19660
pyrus_communis pycom03g17810
rosa_laevigata RLG00000033435
rosa_roxburghii Rroxscaffold_1G00047160
rosa_rugosa Rorug05G0134200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 279
AciI CCGC 1 cut(s) 266
AclWI GGATC 2 cut(s) 131, 417
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 2 cut(s) 98, 273
Alw26I GTCTC 4 cut(s) 155, 287, 341, 346
AlwI GGATC 2 cut(s) 131, 417
AlwNI CAGNNNCTG 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 158
ApeKI GCWGC 2 cut(s) 5, 245
ArsI GACNNNNNNTTYG 2 cut(s) 168, 200
Asp700I GAANNNNTTC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 178
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 133
BauI CACGAG 2 cut(s) 165, 385
BbsI GAAGAC 1 cut(s) 332
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 17, 257
BccI CCATC 2 cut(s) 233, 292
BciT130I CCWGG 2 cut(s) 100, 275
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 4 cut(s) 155, 287, 341, 346
BfaI CTAG 1 cut(s) 427
BglII AGATCT 1 cut(s) 29
BisI GCNGC 2 cut(s) 6, 246
BlsI GCNGC 2 cut(s) 7, 247
Bme1390I CCNGG 3 cut(s) 100, 141, 275
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 271
BmrFI CCNGG 3 cut(s) 100, 141, 275
BmsI GCATC 2 cut(s) 76, 217
BpiI GAAGAC 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 360
BpuMI CCSGG 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 99, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 139
BseBI CCWGG 2 cut(s) 100, 275
BseDI CCNNGG 2 cut(s) 99, 258
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 2 cut(s) 17, 257
BsgI GTGCAG 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 4 cut(s) 155, 287, 341, 346
BsmBI CGTCTC 2 cut(s) 287, 341
Bso31I GGTCTC 1 cut(s) 346
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 3 cut(s) 29, 136, 409
BspACI CCGC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 352
BspPI GGATC 2 cut(s) 131, 417
BspTNI GGTCTC 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 99, 258
BssMI GATC 3 cut(s) 29, 136, 409
BssSI CACGAG 2 cut(s) 165, 385
Bst2BI CACGAG 2 cut(s) 165, 385
Bst2UI CCWGG 2 cut(s) 100, 275
Bst4CI ACNGT 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 360, 417
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 3 cut(s) 32, 139, 412
BstMAI GTCTC 4 cut(s) 155, 287, 341, 346
BstMBI GATC 3 cut(s) 29, 136, 409
BstNI CCWGG 2 cut(s) 100, 275
BstSCI CCNGG 3 cut(s) 98, 139, 273
BstSLI GKGCMC 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 17, 257
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 3 cut(s) 29, 136, 409
BstYI RGATCY 3 cut(s) 29, 136, 409
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 271
CsiI ACCWGGT 1 cut(s) 273
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 1 cut(s) 199
CviJI RGCY 2 cut(s) 104, 365
CviKI_1 RGCY 2 cut(s) 104, 365
DdeI CTNAG 2 cut(s) 360, 417
DpnI GATC 3 cut(s) 31, 138, 411
DpnII GATC 3 cut(s) 29, 136, 409
EciI GGCGGA 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 98, 273
Esp3I CGTCTC 2 cut(s) 287, 341
FaeI CATG 1 cut(s) 202
FaiI YATR 4 cut(s) 123, 200, 312, 396
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 1 cut(s) 198
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 6, 246
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 2 cut(s) 6, 246
FspBI CTAG 1 cut(s) 427
GluI GCNGC 2 cut(s) 6, 246
HapII CCGG 1 cut(s) 140
Hin1II CATG 1 cut(s) 202
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 2 cut(s) 280, 382
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 2 cut(s) 46, 160
Hpy8I GTNNAC 2 cut(s) 280, 382
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 2 cut(s) 127, 350
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 360, 417
HpySE526I ACGT 2 cut(s) 127, 350
Hsp92II CATG 1 cut(s) 202
Kzo9I GATC 3 cut(s) 29, 136, 409
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 7 cut(s) 85, 112, 133, 153, 198, 260, 287
Lsp1109I GCAGC 2 cut(s) 17, 257
LweI GCATC 2 cut(s) 76, 217
MabI ACCWGGT 1 cut(s) 273
MaeI CTAG 1 cut(s) 427
MaeII ACGT 2 cut(s) 127, 350
MaeIII GTNAC 2 cut(s) 184, 208
MalI GATC 3 cut(s) 31, 138, 411
MboI GATC 3 cut(s) 29, 136, 409
MboII GAAGA 4 cut(s) 28, 66, 69, 337
MflI RGATCY 3 cut(s) 29, 136, 409
MhlI GDGCHC 1 cut(s) 133
MnlI CCTC 6 cut(s) 68, 121, 253, 262, 355, 400
MroXI GAANNNNTTC 1 cut(s) 53
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 3 cut(s) 100, 141, 275
MvaI CCWGG 2 cut(s) 100, 275
NciI CCSGG 1 cut(s) 141
NdeII GATC 3 cut(s) 29, 136, 409
NlaIII CATG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 184
PaeR7I CTCGAG 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 2 cut(s) 7, 247
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 98, 273
PspGI CCWGG 2 cut(s) 98, 273
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 3 cut(s) 29, 136, 409
SatI GCNGC 2 cut(s) 6, 246
Sau3AI GATC 3 cut(s) 29, 136, 409
Sau96I GGNCC 1 cut(s) 271
ScrFI CCNGG 3 cut(s) 100, 141, 275
SduI GDGCHC 1 cut(s) 133
SetI ASST 5 cut(s) 130, 264, 276, 342, 353
SexAI ACCWGGT 1 cut(s) 273
SfaNI GCATC 2 cut(s) 76, 217
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 1 cut(s) 271
SlaI CTCGAG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SsiI CCGC 1 cut(s) 266
SspMI CTAG 1 cut(s) 427
StyD4I CCNGG 3 cut(s) 98, 139, 273
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 2 cut(s) 130, 353
TaqI TCGA 3 cut(s) 47, 113, 159
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 5, 245
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.