Rroxscaffold_1G00047160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0021043
Physical Location & Seq
Forward (+)
66673299 .. 66684698
11400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047160.1

Sequence Viewer

Length: 702 bp
ATGGCGGGGCGAGGTTGGAGGCTTGGCGAAGGCTGCGGTCTCGATCTCGTGGCGAGGCGGGCACGGAGGGGATCGATCTCTCGGGGTTTCGCACGTTGGCGTCCGTGCGCGGGTGGCCCGCTTTGTGGTGGTGGGTTTCGGCGCGGCGGCGGGGCGTGCGAGAGGGCGGGACGGCGGAGCGTGCGGGCTTTGGACTCGATCTCGGTGGATTGCGGCGTCGGATCCTTGTGGGAGTGGCTTTTGGGCCGAGCCTTTGGGCTAGGACAATACAGAGTTATGTATTATTCTCCTACTTGCCTCTACAAGACTCTTTCTCAACTACGGCAAAAGAAAAGAAAGACTATCTCAATTGAATTCAACACACCCGAAAACCTGAATGACACAAAGCATTGTCCGTGTCATGCCATGGCAGCAATTGAGACCCGAGAACACGAACGAGATGTGACCATTGATAACATGAGTGGGGTTACTGGATTTGTAGCAGATACTGCAAGACATGGTGCCGCGAAAACAACAAAGGTGGTAGAGGACTTGATGGACTTGGCAAGAGAGACGATGGACAGTGCCTATGACAATTCCAGGAAGACTACACAAAAGGTCTCCGAGACATTAGTTGCTGAGGCTGATGAGAATGTTGTTGATACGAGTGAGTATAGAAGTATTGAGGATCTATCTAAGCTTGATCATCATGAGGATCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.86

Weight (kDa)

8.63

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021043)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g19660
pyrus_communis pycom03g17810
rosa_laevigata RLG00000033435
rosa_roxburghii Rroxscaffold_1G00047160
rosa_rugosa Rorug05G0134200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 500
AccII CGCG 3 cut(s) 110, 144, 506
AclWI GGATC 4 cut(s) 79, 216, 229, 675
AcsI RAATTY 1 cut(s) 353
AcyI GRCGYC 2 cut(s) 100, 216
AfiI CCNNNNNNNGG 2 cut(s) 110, 125
AgsI TTSAA 2 cut(s) 353, 358
AjnI CCWGG 1 cut(s) 578
AluBI AGCT 1 cut(s) 679
AluI AGCT 1 cut(s) 679
Alw26I GTCTC 5 cut(s) 44, 413, 545, 599, 604
AlwI GGATC 4 cut(s) 79, 216, 229, 675
AlwNI CAGNNNCTG 1 cut(s) 488
Ama87I CYCGRG 2 cut(s) 81, 423
AoxI GGCC 2 cut(s) 115, 244
ApeKI GCWGC 2 cut(s) 33, 410
ApoI RAATTY 1 cut(s) 353
AspLEI GCGC 2 cut(s) 110, 144
AspS9I GGNCC 2 cut(s) 116, 244
AvaI CYCGRG 2 cut(s) 81, 423
BaeGI GKGCMC 1 cut(s) 64
BamHI GGATCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 500
BauI CACGAG 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 590
BbvCI CCTCAGC 1 cut(s) 618
BbvI GCAGC 2 cut(s) 20, 422
BccI CCATC 2 cut(s) 529, 550
BceAI ACGGC 2 cut(s) 188, 338
BciT130I CCWGG 1 cut(s) 580
BclI TGATCA 1 cut(s) 682
BcoDI GTCTC 5 cut(s) 44, 413, 545, 599, 604
BfaI CTAG 1 cut(s) 260
BisI GCNGC 6 cut(s) 34, 145, 148, 214, 411, 504
BlsI GCNGC 6 cut(s) 35, 146, 149, 215, 412, 505
Bme1390I CCNGG 1 cut(s) 580
BmeT110I CYCGRG 2 cut(s) 81, 423
BmgT120I GGNCC 2 cut(s) 116, 244
BmiI GGNNCC 2 cut(s) 223, 502
BmrFI CCNGG 1 cut(s) 580
BpiI GAAGAC 1 cut(s) 590
Bpu10I CCTNAGC 1 cut(s) 618
Bsa29I ATCGAT 1 cut(s) 74
BsaHI GRCGYC 2 cut(s) 100, 216
BsaI GGTCTC 3 cut(s) 44, 413, 604
BsaJI CCNNGG 1 cut(s) 405
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 125
Bse1I ACTGG 1 cut(s) 475
BseBI CCWGG 1 cut(s) 580
BseCI ATCGAT 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 405
BseLI CCNNNNNNNGG 2 cut(s) 110, 125
BseMII CTCAG 1 cut(s) 609
BseNI ACTGG 1 cut(s) 475
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 2 cut(s) 20, 422
Bsh1236I CGCG 3 cut(s) 110, 144, 506
BshFI GGCC 2 cut(s) 117, 246
BshNI GGYRCC 1 cut(s) 500
BshVI ATCGAT 1 cut(s) 74
BsiHKCI CYCGRG 2 cut(s) 81, 423
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 110, 125
BsmAI GTCTC 5 cut(s) 44, 413, 545, 599, 604
BsmBI CGTCTC 1 cut(s) 545
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 2 cut(s) 117, 246
Bso31I GGTCTC 3 cut(s) 44, 413, 604
BsoBI CYCGRG 2 cut(s) 81, 423
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 8 cut(s) 43, 71, 75, 198, 221, 667, 682, 694
Bsp19I CCATGG 1 cut(s) 405
BspANI GGCC 2 cut(s) 117, 246
BspCNI CTCAG 1 cut(s) 610
BspDI ATCGAT 1 cut(s) 74
BspFNI CGCG 3 cut(s) 110, 144, 506
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 2 cut(s) 223, 502
BspPI GGATC 4 cut(s) 79, 216, 229, 675
BspT107I GGYRCC 1 cut(s) 500
BspTNI GGTCTC 3 cut(s) 44, 413, 604
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 8 cut(s) 43, 71, 75, 198, 221, 667, 682, 694
BssNI GRCGYC 2 cut(s) 100, 216
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 405
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 580
Bst4CI ACNGT 1 cut(s) 563
BstACI GRCGYC 2 cut(s) 100, 216
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 5 cut(s) 60, 119, 157, 182, 186
BstDEI CTNAG 2 cut(s) 618, 675
BstDSI CCRYGG 1 cut(s) 405
BstFNI CGCG 3 cut(s) 110, 144, 506
BstHHI GCGC 2 cut(s) 110, 144
BstKTI GATC 8 cut(s) 46, 74, 78, 201, 224, 670, 685, 697
BstMAI GTCTC 5 cut(s) 44, 413, 545, 599, 604
BstMBI GATC 8 cut(s) 43, 71, 75, 198, 221, 667, 682, 694
BstMWI GCNNNNNNNGC 7 cut(s) 33, 59, 114, 156, 181, 410, 488
BstNI CCWGG 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 578
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 3 cut(s) 110, 144, 506
BstV1I GCAGC 2 cut(s) 20, 422
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 2 cut(s) 221, 667
BstYI RGATCY 2 cut(s) 221, 667
Bsu15I ATCGAT 1 cut(s) 74
BsuRI GGCC 2 cut(s) 117, 246
BsuTUI ATCGAT 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 568
Cac8I GCNNGC 5 cut(s) 60, 119, 157, 182, 186
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 1 cut(s) 688
CfoI GCGC 2 cut(s) 110, 144
Cfr13I GGNCC 2 cut(s) 116, 244
ClaI ATCGAT 1 cut(s) 74
CseI GACGC 2 cut(s) 89, 205
CspCI CAANNNNNGTGG 2 cut(s) 501, 536
CviAII CATG 5 cut(s) 401, 406, 457, 497, 689
DdeI CTNAG 2 cut(s) 618, 675
DpnI GATC 8 cut(s) 45, 73, 77, 200, 223, 669, 684, 696
DpnII GATC 8 cut(s) 43, 71, 75, 198, 221, 667, 682, 694
EciI GGCGGA 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 405
Eco31I GGTCTC 3 cut(s) 44, 413, 604
Eco88I CYCGRG 2 cut(s) 81, 423
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 578
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
Esp3I CGTCTC 1 cut(s) 545
FaeI CATG 5 cut(s) 404, 409, 460, 500, 692
FaiI YATR 8 cut(s) 278, 402, 407, 458, 498, 570, 654, 690
FaqI GGGAC 1 cut(s) 183
FatI CATG 5 cut(s) 400, 405, 456, 496, 688
FauI CCCGC 6 cut(s) 51, 103, 126, 143, 160, 177
FbaI TGATCA 1 cut(s) 682
Fnu4HI GCNGC 6 cut(s) 34, 145, 148, 214, 411, 504
Fsp4HI GCNGC 6 cut(s) 34, 145, 148, 214, 411, 504
FspBI CTAG 1 cut(s) 260
GlaI GCGC 2 cut(s) 109, 143
GluI GCNGC 6 cut(s) 34, 145, 148, 214, 411, 504
HaeIII GGCC 2 cut(s) 117, 246
HgaI GACGC 2 cut(s) 89, 205
HhaI GCGC 2 cut(s) 110, 144
Hin1I GRCGYC 2 cut(s) 100, 216
Hin1II CATG 5 cut(s) 404, 409, 460, 500, 692
Hin6I GCGC 2 cut(s) 108, 142
HinP1I GCGC 2 cut(s) 108, 142
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 2 cut(s) 194, 307
Hpy188I TCNGA 2 cut(s) 221, 604
Hpy188III TCNNGA 2 cut(s) 41, 689
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 563
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 491
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 59, 114, 156, 181, 410, 488
HpyF3I CTNAG 2 cut(s) 618, 675
HpySE526I ACGT 1 cut(s) 94
Hsp92I GRCGYC 2 cut(s) 100, 216
Hsp92II CATG 5 cut(s) 404, 409, 460, 500, 692
HspAI GCGC 2 cut(s) 108, 142
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 8 cut(s) 43, 71, 75, 198, 221, 667, 682, 694
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 4 cut(s) 386, 456, 565, 592
Lsp1109I GCAGC 2 cut(s) 20, 422
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 2 cut(s) 442, 466
MalI GATC 8 cut(s) 45, 73, 77, 200, 223, 669, 684, 696
MboI GATC 8 cut(s) 43, 71, 75, 198, 221, 667, 682, 694
MboII GAAGA 1 cut(s) 595
MfeI CAATTG 2 cut(s) 348, 414
MflI RGATCY 2 cut(s) 221, 667
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 4 cut(s) 348, 353, 414, 574
MlyI GAGTC 2 cut(s) 188, 301
MmeI TCCRAC 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 580
MunI CAATTG 2 cut(s) 348, 414
MvaI CCWGG 1 cut(s) 580
MvnI CGCG 3 cut(s) 110, 144, 506
MwoI GCNNNNNNNGC 7 cut(s) 33, 59, 114, 156, 181, 410, 488
NcoI CCATGG 1 cut(s) 405
NdeII GATC 8 cut(s) 43, 71, 75, 198, 221, 667, 682, 694
NlaIII CATG 5 cut(s) 404, 409, 460, 500, 692
NlaIV GGNNCC 2 cut(s) 223, 502
NmeAIII GCCGAG 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 442
PagI TCATGA 1 cut(s) 688
PfoI TCCNGGA 1 cut(s) 578
PkrI GCNGC 6 cut(s) 35, 146, 149, 215, 412, 505
PleI GAGTC 2 cut(s) 188, 301
PpsI GAGTC 2 cut(s) 188, 301
Psp6I CCWGG 1 cut(s) 578
PspGI CCWGG 1 cut(s) 578
PspN4I GGNNCC 2 cut(s) 223, 502
PspPI GGNCC 2 cut(s) 116, 244
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 2 cut(s) 221, 667
SatI GCNGC 6 cut(s) 34, 145, 148, 214, 411, 504
Sau3AI GATC 8 cut(s) 43, 71, 75, 198, 221, 667, 682, 694
Sau96I GGNCC 2 cut(s) 116, 244
SchI GAGTC 2 cut(s) 188, 301
ScrFI CCNGG 1 cut(s) 580
SduI GDGCHC 1 cut(s) 64
SetI ASST 6 cut(s) 16, 97, 375, 522, 600, 681
Sse9I AATT 4 cut(s) 348, 353, 414, 574
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 578
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 1 cut(s) 563
TaiI ACGT 1 cut(s) 97
TaqI TCGA 3 cut(s) 42, 74, 197
TasI AATT 4 cut(s) 348, 353, 414, 574
TauI GCSGC 4 cut(s) 147, 150, 216, 506
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 2 cut(s) 33, 410
Tsp45I GTSAC 1 cut(s) 442
TspGWI ACGGA 3 cut(s) 79, 93, 384
TspRI CASTG 1 cut(s) 568
XapI RAATTY 1 cut(s) 353
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.