Rorug05G0134200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0021043
Physical Location & Seq
Reverse (-)
11986349 .. 11987251
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0134200.1

Sequence Viewer

Length: 903 bp
ATGGCGCCTCCATCTCTCTTCATTCTCCTCATCGCCGCCTCTCTCACCCTCTTCAATCCATCCTCCTCCGCCGCCGCCTCCGCTTCTCCCCCAACCACCTCACCCCCATCACCGCCACCACAACCACCTCTTCCACCACCTCCATCACCATCGCCACCTCCACCTCCATCACCATCACCACCGCCGCCGTCACCTCCATCATCACCTCCGCCGCCGCGATCAAGAATCTCGAGACCATCACGACTTCCGCCGTCGCCTCCATCCCCACTGCCTCCGCCTCCTCCTGCGGCAAGACCGACGGGGCAGCAACTCAACAACATCGTCGACGCTTTGATCGGCTCAGGCGACTTCGGGAGCTGGGTCAACATCATCACGGCCGCGAATCCGCTCGCCCTTCCACTGAGCGCCACCGTCTTCGTGCCTCAAAACGACGCCGTGTCTCGCGTGCCGGCCGCCGACCCGTTCCTGTTGCCTTACCACGTGGTGCCTCAGCGGCTCACCTTCGCCGACCTCCGCCTCTTCAAGACCAACTCTCGCCTCCCGACTCTCCTTCCCGGAAAGTTCATCGTCGTCACCAGCAATTCCGAGTCCAATTTCACCGTCGACGACTCGACTATCACCCAGCCCGACGTCTACGTCACCGCCAACGTCGTCGTCCACGGCGTCGCTAGGGTTCTTGATTACTCTGTTTACGGCGTCGCAACCGTCGACTCTATGCCGAAGCCAAAGCAGCAGCAGTCGCCAGCGCCGCCATCGCCGCCGAGTCCAGGGCAGCTTCTTCCCGCCGGCGTCAGCATCCCGCCGTGGAAGTCCGGTGCGACAACGCCGTGCCTCTGCGTTCAGTTTCCGGTTGGATTAATGGTGGCTTGTGCAGTTTTGGGGTTGAGGAATTACATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

31.21

Weight (kDa)

9.37

Isoelectric Point (pI)

89.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 128 - 226 3.5e-11 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021043)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g19660
pyrus_communis pycom03g17810
rosa_laevigata RLG00000033435
rosa_roxburghii Rroxscaffold_1G00047160
rosa_rugosa Rorug05G0134200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 635
AatII GACGTC 1 cut(s) 633
AccB1I GGYRCC 2 cut(s) 4, 484
AccBSI CCGCTC 1 cut(s) 388
AccI GTMKAC 4 cut(s) 324, 603, 633, 708
AccII CGCG 3 cut(s) 217, 380, 444
AcoI YGGCCR 2 cut(s) 375, 450
AcvI CACGTG 1 cut(s) 481
AcyI GRCGYC 6 cut(s) 5, 432, 630, 663, 696, 789
AdeI CACNNNGTG 1 cut(s) 484
AfiI CCNNNNNNNGG 1 cut(s) 767
AgsI TTSAA 2 cut(s) 55, 523
AhdI GACNNNNNGTC 1 cut(s) 436
AjnI CCWGG 1 cut(s) 766
AluBI AGCT 2 cut(s) 357, 775
AluI AGCT 2 cut(s) 357, 775
Alw26I GTCTC 2 cut(s) 226, 444
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 2 cut(s) 375, 450
ApeKI GCWGC 4 cut(s) 304, 730, 733, 772
AseI ATTAAT 1 cut(s) 857
AspLEI GCGC 3 cut(s) 7, 407, 748
AsuC2I CCSGG 1 cut(s) 555
AvaI CYCGRG 1 cut(s) 229
BanI GGYRCC 2 cut(s) 4, 484
BbrPI CACGTG 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 406
BbvCI CCTCAGC 1 cut(s) 489
BbvI GCAGC 4 cut(s) 316, 742, 745, 784
BceAI ACGGC 8 cut(s) 172, 235, 390, 419, 676, 709, 787, 811
BciT130I CCWGG 1 cut(s) 768
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 2 cut(s) 226, 444
BfaI CTAG 1 cut(s) 669
BfoI RGCGCY 3 cut(s) 8, 408, 749
BglI GCCNNNNNGGC 1 cut(s) 493
Bme1390I CCNGG 2 cut(s) 555, 768
BmeRI GACNNNNNGTC 1 cut(s) 436
BmeT110I CYCGRG 1 cut(s) 229
BmiI GGNNCC 2 cut(s) 6, 486
BmrFI CCNGG 2 cut(s) 555, 768
BmsI GCATC 1 cut(s) 804
BpiI GAAGAC 1 cut(s) 406
Bpu10I CCTNAGC 2 cut(s) 340, 489
BpuMI CCSGG 1 cut(s) 555
BsaAI YACGTR 1 cut(s) 481
BsaHI GRCGYC 6 cut(s) 5, 432, 630, 663, 696, 789
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 3 cut(s) 658, 767, 803
BsaWI WCCGGW 2 cut(s) 812, 847
Bsc4I CCNNNNNNNGG 1 cut(s) 767
Bse118I RCCGGY 2 cut(s) 448, 785
BseBI CCWGG 1 cut(s) 768
BseDI CCNNGG 3 cut(s) 658, 767, 803
BseGI GGATG 3 cut(s) 59, 260, 795
BseLI CCNNNNNNNGG 1 cut(s) 767
BseMII CTCAG 3 cut(s) 354, 392, 503
BseRI GAGGAG 3 cut(s) 17, 55, 270
BseX3I CGGCCG 2 cut(s) 375, 450
BseXI GCAGC 4 cut(s) 316, 742, 745, 784
BseYI CCCAGC 2 cut(s) 357, 621
BsgI GTGCAG 1 cut(s) 891
Bsh1236I CGCG 3 cut(s) 217, 380, 444
Bsh1285I CGRYCG 2 cut(s) 378, 453
BshFI GGCC 2 cut(s) 377, 452
BshNI GGYRCC 2 cut(s) 4, 484
BsiEI CGRYCG 2 cut(s) 378, 453
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 5 cut(s) 449, 555, 786, 813, 848
BslI CCNNNNNNNGG 1 cut(s) 767
BsmAI GTCTC 2 cut(s) 226, 444
BsnI GGCC 2 cut(s) 377, 452
Bso31I GGTCTC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 229
Bsp143I GATC 2 cut(s) 218, 333
BspANI GGCC 2 cut(s) 377, 452
BspCNI CTCAG 3 cut(s) 353, 393, 502
BspFNI CGCG 3 cut(s) 217, 380, 444
BspLI GGNNCC 2 cut(s) 6, 486
BspT107I GGYRCC 2 cut(s) 4, 484
BspTNI GGTCTC 1 cut(s) 226
BsrBI CCGCTC 1 cut(s) 388
BsrFI RCCGGY 2 cut(s) 448, 785
BssAI RCCGGY 2 cut(s) 448, 785
BssECI CCNNGG 3 cut(s) 658, 767, 803
BssMI GATC 2 cut(s) 218, 333
BssNI GRCGYC 6 cut(s) 5, 432, 630, 663, 696, 789
Bst2UI CCWGG 1 cut(s) 768
Bst4CI ACNGT 3 cut(s) 412, 601, 706
Bst6I CTCTTC 4 cut(s) 23, 56, 135, 524
BstACI GRCGYC 6 cut(s) 5, 432, 630, 663, 696, 789
BstBAI YACGTR 1 cut(s) 481
BstC8I GCNNGC 5 cut(s) 390, 446, 450, 744, 787
BstDEI CTNAG 3 cut(s) 340, 401, 489
BstDSI CCRYGG 2 cut(s) 658, 803
BstF5I GGATG 3 cut(s) 59, 260, 795
BstFNI CGCG 3 cut(s) 217, 380, 444
BstH2I RGCGCY 3 cut(s) 8, 408, 749
BstHHI GCGC 3 cut(s) 7, 407, 748
BstKTI GATC 2 cut(s) 221, 336
BstMAI GTCTC 2 cut(s) 226, 444
BstMBI GATC 2 cut(s) 218, 333
BstMCI CGRYCG 2 cut(s) 378, 453
BstMWI GCNNNNNNNGC 7 cut(s) 80, 493, 730, 739, 748, 754, 757
BstNI CCWGG 1 cut(s) 768
BstSCI CCNGG 2 cut(s) 553, 766
BstUI CGCG 3 cut(s) 217, 380, 444
BstV1I GCAGC 4 cut(s) 316, 742, 745, 784
BstV2I GAAGAC 1 cut(s) 406
BstZI CGGCCG 2 cut(s) 375, 450
BsuRI GGCC 2 cut(s) 377, 452
BtgI CCRYGG 2 cut(s) 658, 803
BtgZI GCGATG 3 cut(s) 16, 135, 738
BtsCI GGATG 3 cut(s) 59, 260, 795
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 2 cut(s) 266, 398
Cac8I GCNNGC 5 cut(s) 390, 446, 450, 744, 787
CfoI GCGC 3 cut(s) 7, 407, 748
Cfr10I RCCGGY 2 cut(s) 448, 785
CseI GACGC 5 cut(s) 335, 440, 652, 685, 778
CviJI RGCY 9 cut(s) 339, 357, 377, 452, 496, 625, 724, 775, 866
CviKI_1 RGCY 9 cut(s) 339, 357, 377, 452, 496, 625, 724, 775, 866
DdeI CTNAG 3 cut(s) 340, 401, 489
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 220, 335
DpnII GATC 2 cut(s) 218, 333
DraIII CACNNNGTG 1 cut(s) 484
DrdI GACNNNNNNGTC 1 cut(s) 635
DriI GACNNNNNGTC 1 cut(s) 436
DseDI GACNNNNNNGTC 1 cut(s) 635
EaeI YGGCCR 2 cut(s) 375, 450
EagI CGGCCG 2 cut(s) 375, 450
Eam1104I CTCTTC 4 cut(s) 23, 56, 135, 524
Eam1105I GACNNNNNGTC 1 cut(s) 436
EarI CTCTTC 4 cut(s) 23, 56, 135, 524
EciI GGCGGA 5 cut(s) 58, 198, 237, 264, 503
EclXI CGGCCG 2 cut(s) 375, 450
Eco31I GGTCTC 1 cut(s) 226
Eco52I CGGCCG 2 cut(s) 375, 450
Eco72I CACGTG 1 cut(s) 481
Eco88I CYCGRG 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 766
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaiI YATR 1 cut(s) 716
FauI CCCGC 2 cut(s) 790, 807
FblI GTMKAC 4 cut(s) 324, 603, 633, 708
FokI GGATG 3 cut(s) 46, 247, 782
FspBI CTAG 1 cut(s) 669
GlaI GCGC 3 cut(s) 6, 406, 747
GsaI CCCAGC 2 cut(s) 361, 625
HaeII RGCGCY 3 cut(s) 8, 408, 749
HaeIII GGCC 2 cut(s) 377, 452
HapII CCGG 5 cut(s) 449, 555, 786, 813, 848
HgaI GACGC 5 cut(s) 335, 440, 652, 685, 778
HhaI GCGC 3 cut(s) 7, 407, 748
Hin1I GRCGYC 6 cut(s) 5, 432, 630, 663, 696, 789
Hin6I GCGC 3 cut(s) 5, 405, 746
HinP1I GCGC 3 cut(s) 5, 405, 746
HincII GTYRAC 4 cut(s) 325, 364, 604, 709
HindII GTYRAC 4 cut(s) 325, 364, 604, 709
HinfI GANTC 7 cut(s) 225, 382, 544, 587, 608, 710, 763
HpaII CCGG 5 cut(s) 449, 555, 786, 813, 848
Hpy166II GTNNAC 7 cut(s) 325, 364, 604, 634, 658, 691, 709
Hpy188I TCNGA 1 cut(s) 586
Hpy188III TCNNGA 8 cut(s) 222, 229, 231, 240, 352, 523, 541, 677
Hpy8I GTNNAC 7 cut(s) 325, 364, 604, 634, 658, 691, 709
HpyAV CCTTC 3 cut(s) 404, 511, 560
HpyCH4III ACNGT 3 cut(s) 412, 601, 706
HpyCH4IV ACGT 4 cut(s) 480, 630, 636, 648
HpyCH4V TGCA 1 cut(s) 872
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 493, 730, 739, 748, 754, 757
HpyF3I CTNAG 3 cut(s) 340, 401, 489
HpySE526I ACGT 4 cut(s) 480, 630, 636, 648
Hsp92I GRCGYC 6 cut(s) 5, 432, 630, 663, 696, 789
HspAI GCGC 3 cut(s) 5, 405, 746
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 2 cut(s) 448, 785
KroNI GCCGGC 2 cut(s) 450, 787
Kzo9I GATC 2 cut(s) 218, 333
LmnI GCTCC 1 cut(s) 354
Lsp1109I GCAGC 4 cut(s) 316, 742, 745, 784
LweI GCATC 1 cut(s) 804
MaeI CTAG 1 cut(s) 669
MaeII ACGT 4 cut(s) 480, 630, 636, 648
MaeIII GTNAC 3 cut(s) 189, 571, 637
MalI GATC 2 cut(s) 220, 335
MbiI CCGCTC 1 cut(s) 388
MboI GATC 2 cut(s) 218, 333
MboII GAAGA 6 cut(s) 10, 43, 122, 406, 511, 770
MluCI AATT 3 cut(s) 580, 592, 889
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 5 cut(s) 538, 596, 602, 704, 772
MmeI TCCRAC 1 cut(s) 832
MreI CGCCGGCG 1 cut(s) 785
MroNI GCCGGC 2 cut(s) 448, 785
MseI TTAA 1 cut(s) 857
MspA1I CMGCKG 1 cut(s) 493
MspI CCGG 5 cut(s) 449, 555, 786, 813, 848
MspR9I CCNGG 2 cut(s) 555, 768
MvaI CCWGG 1 cut(s) 768
MvnI CGCG 3 cut(s) 217, 380, 444
MwoI GCNNNNNNNGC 7 cut(s) 80, 493, 730, 739, 748, 754, 757
NaeI GCCGGC 2 cut(s) 450, 787
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 555
NdeII GATC 2 cut(s) 218, 333
NgoMIV GCCGGC 2 cut(s) 448, 785
NlaIV GGNNCC 2 cut(s) 6, 486
NmeAIII GCCGAG 1 cut(s) 786
NmuCI GTSAC 3 cut(s) 189, 571, 637
PaeR7I CTCGAG 1 cut(s) 229
PcsI WCGNNNNNNNCGW 3 cut(s) 342, 660, 705
PdiI GCCGGC 2 cut(s) 450, 787
PfeI GAWTC 2 cut(s) 225, 382
PfoI TCCNGGA 1 cut(s) 553
PleI GAGTC 5 cut(s) 538, 595, 602, 704, 771
PluTI GGCGCC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 481
PmlI CACGTG 1 cut(s) 481
PpsI GAGTC 5 cut(s) 538, 595, 602, 704, 771
Ppu21I YACGTR 1 cut(s) 481
PshBI ATTAAT 1 cut(s) 857
Psp6I CCWGG 1 cut(s) 766
PspCI CACGTG 1 cut(s) 481
PspFI CCCAGC 2 cut(s) 357, 621
PspGI CCWGG 1 cut(s) 766
PspN4I GGNNCC 2 cut(s) 6, 486
SalI GTCGAC 3 cut(s) 323, 602, 707
SaqAI TTAA 1 cut(s) 857
Sau3AI GATC 2 cut(s) 218, 333
SchI GAGTC 5 cut(s) 538, 596, 602, 704, 772
ScrFI CCNGG 2 cut(s) 555, 768
SfaNI GCATC 1 cut(s) 804
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 229
SgrAI CRCCGGYG 1 cut(s) 785
SgrDI CGTCGACG 2 cut(s) 323, 602
SlaI CTCGAG 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 3 cut(s) 580, 592, 889
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 669
StyD4I CCNGG 2 cut(s) 553, 766
TaaI ACNGT 3 cut(s) 412, 601, 706
TaiI ACGT 4 cut(s) 483, 633, 639, 651
TaqI TCGA 5 cut(s) 230, 324, 603, 611, 708
TaqII GACCGA 1 cut(s) 310
TasI AATT 3 cut(s) 580, 592, 889
TfiI GAWTC 2 cut(s) 225, 382
Tru1I TTAA 1 cut(s) 857
Tru9I TTAA 1 cut(s) 857
TscAI CASTG 2 cut(s) 273, 405
TseFI GTSAC 3 cut(s) 189, 571, 637
TseI GCWGC 4 cut(s) 304, 730, 733, 772
Tsp45I GTSAC 3 cut(s) 189, 571, 637
TspDTI ATGAA 2 cut(s) 10, 553
TspRI CASTG 2 cut(s) 273, 405
VspI ATTAAT 1 cut(s) 857
XhoI CTCGAG 1 cut(s) 229
XmiI GTMKAC 4 cut(s) 324, 603, 633, 708
XspI CTAG 1 cut(s) 669
ZraI GACGTC 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.