RLG00000033435

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0021043
Physical Location & Seq
Reverse (-)
27131575 .. 27135411
3837 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033435

Sequence Viewer

Length: 444 bp
ATGGCAGCAACTTCATCGTTGTCAAAGAGATCTGTTTTCAACCTCTCAAAAATTTTGCTCAAAGAGCATCCTTCTTATTCTGTTCAATCTTTGTTATCCAGGGCGTGCTTCTCCACTTCTTATGAACGTGCCCAAGATCCAAGAAATAGGGCACCAATTGAGACCCGAGAGCACGAACGAGATGTGACCATTGATAACATGAGTGGGGTTACTGGATTTGTAGCAGATGCTGTAAGACATGGTGCCGCGAAAACAACAGAGGTGGCAGAGGACTTGATGGATTTGGCAAGAGAGACGATAAACAGTGCCTATGACAATTCCAGGAAGACTACACAAAAGGTCTCCGAGACATTAGTTGCTGAGGCTGATGAGAATGTTGTTGATACGAGTGAGTATAGAAGTATTGAGGATCTATCTAAGCTTGATCATCATGAGGATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.44

Weight (kDa)

5.21

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021043)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g19660
pyrus_communis pycom03g17810
rosa_laevigata RLG00000033435
rosa_roxburghii Rroxscaffold_1G00047160
rosa_rugosa Rorug05G0134200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 151, 242
AccII CGCG 1 cut(s) 248
AciI CCGC 1 cut(s) 246
AclWI GGATC 2 cut(s) 131, 417
AcsI RAATTY 1 cut(s) 51
AgsI TTSAA 2 cut(s) 40, 86
AjnI CCWGG 2 cut(s) 98, 320
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 4 cut(s) 155, 287, 341, 346
AlwI GGATC 2 cut(s) 131, 417
AlwNI CAGNNNCTG 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 165
BaeGI GKGCMC 2 cut(s) 133, 154
BanI GGYRCC 2 cut(s) 151, 242
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 174
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 271
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 2 cut(s) 100, 322
BclI TGATCA 1 cut(s) 424
BcoDI GTCTC 4 cut(s) 155, 287, 341, 346
BglII AGATCT 1 cut(s) 29
BisI GCNGC 2 cut(s) 6, 246
BlsI GCNGC 2 cut(s) 7, 247
Bme1390I CCNGG 2 cut(s) 100, 322
BmeT110I CYCGRG 1 cut(s) 165
BmiI GGNNCC 2 cut(s) 153, 244
BmrFI CCNGG 2 cut(s) 100, 322
BmsI GCATC 2 cut(s) 76, 217
BpiI GAAGAC 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 360
BsaI GGTCTC 2 cut(s) 155, 346
BsaJI CCNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 2 cut(s) 100, 322
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 2 cut(s) 133, 154
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 248
BshNI GGYRCC 2 cut(s) 151, 242
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 165
BsmAI GTCTC 4 cut(s) 155, 287, 341, 346
BsmBI CGTCTC 1 cut(s) 287
Bso31I GGTCTC 2 cut(s) 155, 346
BsoBI CYCGRG 1 cut(s) 165
Bsp1286I GDGCHC 3 cut(s) 133, 154, 174
Bsp143I GATC 5 cut(s) 29, 136, 409, 424, 436
BspACI CCGC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 352
BspFNI CGCG 1 cut(s) 248
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 153, 244
BspPI GGATC 2 cut(s) 131, 417
BspT107I GGYRCC 2 cut(s) 151, 242
BspTNI GGTCTC 2 cut(s) 155, 346
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 5 cut(s) 29, 136, 409, 424, 436
Bst2UI CCWGG 2 cut(s) 100, 322
Bst4CI ACNGT 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 360, 417
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 248
BstKTI GATC 5 cut(s) 32, 139, 412, 427, 439
BstMAI GTCTC 4 cut(s) 155, 287, 341, 346
BstMBI GATC 5 cut(s) 29, 136, 409, 424, 436
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 2 cut(s) 100, 322
BstSCI CCNGG 2 cut(s) 98, 320
BstSLI GKGCMC 2 cut(s) 133, 154
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 3 cut(s) 29, 136, 409
BstYI RGATCY 3 cut(s) 29, 136, 409
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 230
CciI TCATGA 1 cut(s) 430
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 3 cut(s) 199, 239, 431
CviJI RGCY 2 cut(s) 365, 421
CviKI_1 RGCY 2 cut(s) 365, 421
DdeI CTNAG 2 cut(s) 360, 417
DpnI GATC 5 cut(s) 31, 138, 411, 426, 438
DpnII GATC 5 cut(s) 29, 136, 409, 424, 436
Eco31I GGTCTC 2 cut(s) 155, 346
Eco88I CYCGRG 1 cut(s) 165
EcoRII CCWGG 2 cut(s) 98, 320
Esp3I CGTCTC 1 cut(s) 287
FaeI CATG 3 cut(s) 202, 242, 434
FaiI YATR 6 cut(s) 123, 200, 240, 312, 396, 432
FatI CATG 3 cut(s) 198, 238, 430
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 2 cut(s) 6, 246
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 2 cut(s) 6, 246
GluI GCNGC 2 cut(s) 6, 246
Hin1II CATG 3 cut(s) 202, 242, 434
HindIII AAGCTT 1 cut(s) 419
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 1 cut(s) 431
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 360, 417
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 3 cut(s) 202, 242, 434
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 5 cut(s) 29, 136, 409, 424, 436
LpnPI CCDG 5 cut(s) 85, 112, 198, 307, 334
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 76, 217
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 184, 208
MalI GATC 5 cut(s) 31, 138, 411, 426, 438
MboI GATC 5 cut(s) 29, 136, 409, 424, 436
MboII GAAGA 1 cut(s) 337
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 3 cut(s) 29, 136, 409
MhlI GDGCHC 3 cut(s) 133, 154, 174
MluCI AATT 3 cut(s) 51, 156, 316
MnlI CCTC 6 cut(s) 53, 253, 262, 355, 400, 427
MspR9I CCNGG 2 cut(s) 100, 322
MunI CAATTG 1 cut(s) 156
MvaI CCWGG 2 cut(s) 100, 322
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 5 cut(s) 29, 136, 409, 424, 436
NlaIII CATG 3 cut(s) 202, 242, 434
NlaIV GGNNCC 2 cut(s) 153, 244
NmuCI GTSAC 1 cut(s) 184
PagI TCATGA 1 cut(s) 430
PfoI TCCNGGA 1 cut(s) 320
PkrI GCNGC 2 cut(s) 7, 247
Psp6I CCWGG 2 cut(s) 98, 320
PspGI CCWGG 2 cut(s) 98, 320
PspN4I GGNNCC 2 cut(s) 153, 244
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 3 cut(s) 29, 136, 409
SatI GCNGC 2 cut(s) 6, 246
Sau3AI GATC 5 cut(s) 29, 136, 409, 424, 436
ScrFI CCNGG 2 cut(s) 100, 322
SduI GDGCHC 3 cut(s) 133, 154, 174
SetI ASST 5 cut(s) 45, 130, 264, 342, 423
SfaNI GCATC 2 cut(s) 76, 217
Sse9I AATT 3 cut(s) 51, 156, 316
SsiI CCGC 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 98, 320
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 130
TasI AATT 3 cut(s) 51, 156, 316
TauI GCSGC 1 cut(s) 248
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 1 cut(s) 310
XapI RAATTY 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.