FvH4_3g32200

Double-stranded RNA-binding protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
27469864 .. 27473808
3945 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32200.t1

Sequence Viewer

Length: 1284 bp
ATGTACAAGAACCAGCTGCAAGAGCTGGCCCAAAGGAGCTGCTTCAATTTGCCTTCCTACACGTGCATTCGGGAAGGTCCCGACCACGCGCCTCGCTTCAAGGCCACCGTCAACTTTAACGGCGAGATCTTCGAGAGCCCTCACTACTGCAACACTCTCCGTCAGGCCGAGCACTCCGCCGCCGAAGTCGCCCTCAACTACCTCTCCAACCGCGGTCCCTCTCACTCCCTCGCTGCCAGGATACTGGATGAGACGGGGGTTTACAAGAACCTCTTGCAGGAAATTGCTCAAAGAGTTGGAGCTCCATTACCACAGTACACGACATTCAGGTCTGGCCTCGGGCACCTACCTGTTTTTACCGGGACAGTTGAATTGGCTGGAATCACATTTACAGGGGACTCAGCCAAGAACAAAAAACAAGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCATCTCTGAAACAATTGGCAAAAGAGACGGCAAGTTCTTCATCTGAACATGAGAACAATGATGAGCTGGAACAGATCACTATAGCACGGGCCTTGCTTAATTATCGGTTGAAGGAGAAAATGTCAATGGCGAATCCGTCAGGTCCAATACTGTTTCCAAAGAAGTTTCCAGCTCAGAACCCCAGACCTACGAGTCCACAGCCTCCATCTGCTATGACTTCAAAGATACTTCCCCTAATTTGTCAAAAGCAAGCTCCTCGTAGCAGATTCCAATCGAATGCATCGAATGCTACAAATGAAAGTCTTGTCCCATCCTCACATTCTTCTCCAGTGGAAAGCCGATGGACGCGTCCACAGAGATTCCCTGCTGCAGGAGCAGTTCCTTACGTTCCCATTCGACAGATGAGGACTCCTTGCCATAGGATGGCACCTCCAGTGACTATAAGGACATCAGTGCCTGTGTTCTCTGCACCACCCCTTCCGCCACCTCCTGGGTTACACCGCCAGACAATGTGTGTTCCACCCATACGAGTGGCTCCACCGGTTACTATGAGGCAAGCTGTGCCTGTATTTGCTGCTCCACCGGTGAGAAGAGATGATTCAAAAAAGGATGATCTTCCAACCAGTCGAAAAGAAGAGTCTCCAATCGTCCCTAAAGAAGCTGCTCCTGCTGTCATTGCTCCTGCTGTTACTGCTGCTGCTTCTCCTGCTGTTATTGCTCCTCCCCTTCCAAATAAATCAATAGCTCAAGTAGTGGAAAAAAGTGGAAGCACATCGGCAAACGATTTGCAGGAATCCAAGACAGTGCAAGGCTTGGAACAACTAAAAATTTGA

Protein Analysis

428

Amino Acids

46.44

Weight (kDa)

9.67

Isoelectric Point (pI)

66.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 2 - 68 9.1e-17 Double-stranded RNA binding motif
dsrm PF00035 88 - 153 7.5e-14 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28380
fragaria_vesca FvH4_3g32200
malus_domestica MD03G1118400.v1.1 MD11G1136700.v1.1
prunus_persica Prupe.6G102200_v2.0.a1
pyrus_communis pycom11g11320
rosa_chinensis RchiOBHm_Chr5g0058811
rosa_laevigata RLG00000035253
rosa_multiflora Rmu_sc0005457.1_g000002
rosa_roxburghii Rroxscaffold_1G00021580
rosa_rugosa Rorug05G0319300
rosa_samantha Rh5AG384100 Rh5BG396000 Rh5CG419900 Rh5DG411800
rosa_wichuraiana Rw5G036190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 328, 642
AccB1I GGYRCC 2 cut(s) 342, 877
AccB7I CCANNNNNTGG 2 cut(s) 874, 941
AccII CGCG 3 cut(s) 89, 213, 799
AciI CCGC 6 cut(s) 177, 180, 211, 213, 932, 952
AcsI RAATTY 1 cut(s) 1278
AcvI CACGTG 1 cut(s) 63
AfaI GTAC 2 cut(s) 5, 317
AfiI CCNNNNNNNGG 4 cut(s) 277, 821, 874, 941
AflIII ACRYGT 2 cut(s) 60, 797
AgeI ACCGGT 2 cut(s) 991, 1033
AgsI TTSAA 6 cut(s) 46, 100, 371, 562, 672, 1053
AjnI CCWGG 2 cut(s) 236, 940
Alw21I GWGCWC 2 cut(s) 174, 304
Alw26I GTCTC 3 cut(s) 245, 470, 1095
AlwNI CAGNNNCTG 1 cut(s) 908
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 5 cut(s) 27, 102, 165, 334, 540
ApoI RAATTY 1 cut(s) 1278
AsiGI ACCGGT 2 cut(s) 991, 1033
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 5 cut(s) 28, 77, 215, 540, 593
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 1048
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 3 cut(s) 77, 215, 593
BaeGI GKGCMC 1 cut(s) 345
BanI GGYRCC 2 cut(s) 342, 877
BanII GRGCYC 2 cut(s) 140, 304
BbrPI CACGTG 1 cut(s) 63
Bbv12I GWGCWC 2 cut(s) 174, 304
BccI CCATC 4 cut(s) 664, 769, 786, 868
BceAI ACGGC 2 cut(s) 136, 495
BcgI CGANNNNNNTGC 2 cut(s) 689, 723
BciT130I CCWGG 2 cut(s) 238, 942
BciVI GTATCC 1 cut(s) 234
BcnI CCSGG 1 cut(s) 361
BcoDI GTCTC 3 cut(s) 245, 470, 1095
BfmI CTRYAG 2 cut(s) 531, 819
BfuI GTATCC 1 cut(s) 234
BglII AGATCT 1 cut(s) 126
Bme1390I CCNGG 3 cut(s) 238, 361, 942
Bme18I GGWCC 3 cut(s) 77, 215, 593
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 5 cut(s) 28, 77, 215, 540, 593
BmiI GGNNCC 5 cut(s) 79, 217, 344, 879, 987
BmrFI CCNGG 3 cut(s) 238, 361, 942
BmsI GCATC 1 cut(s) 740
BpmI CTGGAG 2 cut(s) 762, 867
BpuEI CTTGAG 1 cut(s) 1182
BpuMI CCSGG 1 cut(s) 361
BsaAI YACGTR 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 721
BsaJI CCNNGG 3 cut(s) 211, 337, 941
BsaWI WCCGGW 2 cut(s) 991, 1033
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 557, 587
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 821, 874, 941
Bse118I RCCGGY 2 cut(s) 991, 1033
Bse1I ACTGG 4 cut(s) 249, 779, 884, 1074
Bse3DI GCAATG 2 cut(s) 444, 1125
Bse8I GATNNNNATC 1 cut(s) 721
BseBI CCWGG 2 cut(s) 238, 942
BseDI CCNNGG 3 cut(s) 211, 337, 941
BseGI GGATG 4 cut(s) 253, 761, 879, 1066
BseJI GATNNNNATC 1 cut(s) 721
BseLI CCNNNNNNNGG 4 cut(s) 277, 821, 874, 941
BseMI GCAATG 2 cut(s) 444, 1125
BseMII CTCAG 2 cut(s) 414, 638
BseNI ACTGG 4 cut(s) 249, 779, 884, 1074
BseRI GAGGAG 2 cut(s) 696, 1161
BseSI GKGCMC 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 903
Bsh1236I CGCG 3 cut(s) 89, 213, 799
BshFI GGCC 5 cut(s) 29, 104, 167, 336, 542
BshNI GGYRCC 2 cut(s) 342, 877
BshTI ACCGGT 2 cut(s) 991, 1033
BsiHKAI GWGCWC 2 cut(s) 174, 304
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 3 cut(s) 360, 992, 1034
BslFI GGGAC 6 cut(s) 63, 201, 376, 410, 743, 1085
BslI CCNNNNNNNGG 4 cut(s) 277, 821, 874, 941
BsmAI GTCTC 3 cut(s) 245, 470, 1095
BsmBI CGTCTC 2 cut(s) 245, 470
BsmFI GGGAC 6 cut(s) 63, 201, 376, 410, 743, 1085
BsmI GAATGC 4 cut(s) 66, 436, 733, 742
BsnI GGCC 5 cut(s) 29, 104, 167, 336, 542
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 4 cut(s) 140, 174, 304, 345
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 126, 525, 1063
BspACI CCGC 6 cut(s) 177, 180, 211, 213, 932, 952
BspANI GGCC 5 cut(s) 29, 104, 167, 336, 542
BspCNI CTCAG 2 cut(s) 413, 637
BspFNI CGCG 3 cut(s) 89, 213, 799
BspLI GGNNCC 5 cut(s) 79, 217, 344, 879, 987
BspMAI CTGCAG 1 cut(s) 823
BspT107I GGYRCC 2 cut(s) 342, 877
BsrDI GCAATG 2 cut(s) 444, 1125
BsrFI RCCGGY 2 cut(s) 991, 1033
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 4 cut(s) 249, 779, 884, 1074
BssAI RCCGGY 2 cut(s) 991, 1033
BssECI CCNNGG 3 cut(s) 211, 337, 941
BssMI GATC 3 cut(s) 126, 525, 1063
Bst2UI CCWGG 2 cut(s) 238, 942
Bst4CI ACNGT 5 cut(s) 109, 315, 367, 603, 1255
Bst6I CTCTTC 2 cut(s) 1036, 1080
BstAPI GCANNNNNTGC 2 cut(s) 737, 1012
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 27, 702, 1008
BstDEI CTNAG 2 cut(s) 400, 624
BstDSI CCRYGG 1 cut(s) 211
BstENI CCTNNNNNAGG 2 cut(s) 275, 819
BstF5I GGATG 4 cut(s) 253, 761, 879, 1066
BstFNI CGCG 3 cut(s) 89, 213, 799
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 3 cut(s) 129, 528, 1066
BstMAI GTCTC 3 cut(s) 245, 470, 1095
BstMBI GATC 3 cut(s) 126, 525, 1063
BstNI CCWGG 2 cut(s) 238, 942
BstSCI CCNGG 3 cut(s) 236, 359, 940
BstSFI CTRYAG 2 cut(s) 531, 819
BstSLI GKGCMC 1 cut(s) 345
BstUI CGCG 3 cut(s) 89, 213, 799
BstX2I RGATCY 1 cut(s) 126
BstXI CCANNNNNNTGG 2 cut(s) 244, 982
BstYI RGATCY 1 cut(s) 126
BsuI GTATCC 1 cut(s) 234
BsuRI GGCC 5 cut(s) 29, 104, 167, 336, 542
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 4 cut(s) 253, 761, 879, 1066
BtsIMutI CAGTG 4 cut(s) 786, 891, 909, 1260
Cac8I GCNNGC 3 cut(s) 27, 702, 1008
CaiI CAGNNNCTG 1 cut(s) 908
CfoI GCGC 1 cut(s) 91
Cfr10I RCCGGY 2 cut(s) 991, 1033
Cfr13I GGNCC 5 cut(s) 28, 77, 215, 540, 593
Cfr42I CCGCGG 1 cut(s) 214
CseI GACGC 2 cut(s) 788, 805
Csp6I GTAC 2 cut(s) 4, 316
CspAI ACCGGT 2 cut(s) 991, 1033
CviAII CATG 1 cut(s) 500
CviQI GTAC 2 cut(s) 4, 316
DdeI CTNAG 2 cut(s) 400, 624
DpnI GATC 3 cut(s) 128, 527, 1065
DpnII GATC 3 cut(s) 126, 525, 1063
DrdI GACNNNNNNGTC 2 cut(s) 328, 642
DseDI GACNNNNNNGTC 2 cut(s) 328, 642
Eam1104I CTCTTC 2 cut(s) 1036, 1080
EarI CTCTTC 2 cut(s) 1036, 1080
EciI GGCGGA 2 cut(s) 166, 921
Ecl136II GAGCTC 1 cut(s) 302
Eco24I GRGCYC 2 cut(s) 140, 304
Eco47I GGWCC 3 cut(s) 77, 215, 593
Eco53kI GAGCTC 1 cut(s) 302
Eco72I CACGTG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 302
EcoNI CCTNNNNNAGG 2 cut(s) 275, 819
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 236, 940
EcoT22I ATGCAT 1 cut(s) 733
EcoT38I GRGCYC 2 cut(s) 140, 304
Esp3I CGTCTC 2 cut(s) 245, 470
FaeI CATG 1 cut(s) 503
FaiI YATR 7 cut(s) 501, 533, 665, 870, 893, 977, 1001
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 6 cut(s) 63, 201, 376, 410, 743, 1085
FatI CATG 1 cut(s) 499
FokI GGATG 4 cut(s) 260, 748, 886, 1073
FriOI GRGCYC 2 cut(s) 140, 304
GlaI GCGC 1 cut(s) 90
GsuI CTGGAG 2 cut(s) 762, 867
HaeIII GGCC 5 cut(s) 29, 104, 167, 336, 542
HapII CCGG 3 cut(s) 360, 992, 1034
HgaI GACGC 2 cut(s) 788, 805
HhaI GCGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 503
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HpaII CCGG 3 cut(s) 360, 992, 1034
HphI GGTGA 1 cut(s) 1048
Hpy166II GTNNAC 5 cut(s) 112, 262, 318, 647, 803
Hpy188I TCNGA 3 cut(s) 459, 496, 627
Hpy188III TCNNGA 3 cut(s) 71, 80, 133
Hpy8I GTNNAC 5 cut(s) 112, 262, 318, 647, 803
HpyAV CCTTC 5 cut(s) 63, 68, 556, 938, 1187
HpyCH4III ACNGT 5 cut(s) 109, 315, 367, 603, 1255
HpyCH4IV ACGT 2 cut(s) 62, 837
HpyF3I CTNAG 2 cut(s) 400, 624
HpySE526I ACGT 2 cut(s) 62, 837
Hsp92II CATG 1 cut(s) 503
HspAI GCGC 1 cut(s) 89
KspI CCGCGG 1 cut(s) 214
Kzo9I GATC 3 cut(s) 126, 525, 1063
LweI GCATC 1 cut(s) 740
MaeII ACGT 2 cut(s) 62, 837
MaeIII GTNAC 4 cut(s) 886, 945, 994, 1138
MalI GATC 3 cut(s) 128, 527, 1065
MboI GATC 3 cut(s) 126, 525, 1063
MboII GAAGA 7 cut(s) 121, 439, 480, 765, 1053, 1058, 1097
MfeI CAATTG 1 cut(s) 464
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 4 cut(s) 140, 174, 304, 345
MluCI AATT 7 cut(s) 46, 282, 371, 464, 550, 687, 1278
MluI ACGCGT 1 cut(s) 797
MlyI GAGTC 4 cut(s) 392, 652, 853, 1097
MmeI TCCRAC 3 cut(s) 231, 277, 1094
Mph1103I ATGCAT 1 cut(s) 733
MseI TTAA 2 cut(s) 117, 549
MslI CAYNNNNRTG 1 cut(s) 980
MspA1I CMGCKG 2 cut(s) 16, 213
MspI CCGG 3 cut(s) 360, 992, 1034
MspR9I CCNGG 3 cut(s) 238, 361, 942
MunI CAATTG 1 cut(s) 464
Mva1269I GAATGC 4 cut(s) 66, 436, 733, 742
MvaI CCWGG 2 cut(s) 238, 942
MvnI CGCG 3 cut(s) 89, 213, 799
NciI CCSGG 1 cut(s) 361
NdeII GATC 3 cut(s) 126, 525, 1063
NlaIII CATG 1 cut(s) 503
NlaIV GGNNCC 5 cut(s) 79, 217, 344, 879, 987
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 886
NsiI ATGCAT 1 cut(s) 733
PcsI WCGNNNNNNNCGW 1 cut(s) 731
PctI GAATGC 4 cut(s) 66, 436, 733, 742
PfeI GAWTC 6 cut(s) 381, 583, 717, 810, 1049, 1244
PflMI CCANNNNNTGG 2 cut(s) 874, 941
PinAI ACCGGT 2 cut(s) 991, 1033
PleI GAGTC 4 cut(s) 392, 651, 853, 1096
PmaCI CACGTG 1 cut(s) 63
PmlI CACGTG 1 cut(s) 63
PpsI GAGTC 4 cut(s) 392, 651, 853, 1096
Ppu21I YACGTR 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 304
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 236, 940
PspCI CACGTG 1 cut(s) 63
PspGI CCWGG 2 cut(s) 236, 940
PspN4I GGNNCC 5 cut(s) 79, 217, 344, 879, 987
PspPI GGNCC 5 cut(s) 28, 77, 215, 540, 593
PspPPI RGGWCCY 1 cut(s) 77
PstI CTGCAG 1 cut(s) 823
PstNI CAGNNNCTG 1 cut(s) 908
PsuI RGATCY 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 2 cut(s) 5, 317
RsaNI GTAC 2 cut(s) 4, 316
RseI CAYNNNNRTG 1 cut(s) 980
SacI GAGCTC 1 cut(s) 304
SacII CCGCGG 1 cut(s) 214
SaqAI TTAA 2 cut(s) 117, 549
Sau3AI GATC 3 cut(s) 126, 525, 1063
Sau96I GGNCC 5 cut(s) 28, 77, 215, 540, 593
SchI GAGTC 4 cut(s) 392, 652, 853, 1097
ScrFI CCNGG 3 cut(s) 238, 361, 942
SduI GDGCHC 4 cut(s) 140, 174, 304, 345
SfaNI GCATC 1 cut(s) 740
SfcI CTRYAG 2 cut(s) 531, 819
Sfr303I CCGCGG 1 cut(s) 214
SgrAI CRCCGGYG 1 cut(s) 1033
SgrBI CCGCGG 1 cut(s) 214
SinI GGWCC 3 cut(s) 77, 215, 593
SmiMI CAYNNNNRTG 1 cut(s) 980
SmlI CTYRAG 1 cut(s) 1197
SmoI CTYRAG 1 cut(s) 1197
Sse9I AATT 7 cut(s) 46, 282, 371, 464, 550, 687, 1278
SsiI CCGC 6 cut(s) 177, 180, 211, 213, 932, 952
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 3 cut(s) 236, 359, 940
TaaI ACNGT 5 cut(s) 109, 315, 367, 603, 1255
TaiI ACGT 2 cut(s) 65, 840
TaqI TCGA 5 cut(s) 132, 725, 734, 847, 1078
TasI AATT 7 cut(s) 46, 282, 371, 464, 550, 687, 1278
TatI WGTACW 2 cut(s) 3, 315
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 6 cut(s) 381, 583, 717, 810, 1049, 1244
Tru1I TTAA 2 cut(s) 117, 549
Tru9I TTAA 2 cut(s) 117, 549
TscAI CASTG 4 cut(s) 786, 891, 909, 1260
TseFI GTSAC 1 cut(s) 886
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 2 cut(s) 480, 762
TspGWI ACGGA 2 cut(s) 149, 576
TspRI CASTG 4 cut(s) 786, 891, 909, 1260
Van91I CCANNNNNTGG 2 cut(s) 874, 941
VpaK11BI GGWCC 3 cut(s) 77, 215, 593
XagI CCTNNNNNAGG 2 cut(s) 275, 819
XapI RAATTY 1 cut(s) 1278
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.