Rroxscaffold_1G00021580

Double-stranded RNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
26494922 .. 26498000
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021580.1

Sequence Viewer

Length: 996 bp
ATGTACAAGAACCAGCTGCAAGAGCTGGCCCAAAGGAGCTGCTTCAATTTGCCTTCCTACACGTGCATTCGGGAAGGTCCCGACCACGCGCCACGCTTCAAGGCCACCGTCAACTTTAACGGCGAGATCTTCGAGAGCCCTCACTACTGCAACACTCTCCGTCAGGCCGAGCACTCCGCCGCCGAGGTCGCCCTCAACTACCTCTCCAACCGCGGCCCCTCTCACTCCCTCGCCGCTAGGATACTGGATGAGACGGGGGTTTACAAGAACCTCTTGCAGGAAATTGCTCAAAGAGTTGGAGCTCCATTGCCGCAGTACACAACATTCAGGTCTGGCCTTGGGCACCTACCTGTTTTTACCGGGACAGTTGAATTGGCTGGAATCACATTCACAGGCGACCCAGCCAAGAACAAAAAACAAGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCATCTCTGAAACAATTTTCCAGCTCAGAACCCCAGACCTACGAGTCCACAGCCTCCATCTGCTATGACCTCAAAAATACTCCCCTAATTTGTCAAAAGCAAGCACCTCGTAGCAGATTCCAATCGAATGCTACAAATGAAAGTCTTGTACCAACCTCACATTCTTCTCCACTGGAAAGCCGATGGACGCGTCCACAGAGATTCCCTGCTGCAGGAGCAGCTCCTTATGTCCCCATCCGACAGATGAGGACTCCTTGCCATAGGATGGCACCACCAGTGACTATAAGGACATCAGTGCCCGTGTTCTCTGCACCACCCCTTCCACCACCTCCTGGATTGCATCGCCAGGGAATGTGTGTTCCACCCGTACGAGTGGCTCCACCGGTCACTATGAGGCAAGCTGAGCCTGTATTTGCTGCTCCACCGGTGAGAAGAGATGATCCGAAAAGGATGATCTTCCAACCAGTCGAAAGGAAGATCCTCCAATCATCCCGAAAGAAGCTTCTCCTGCTGTTATTGCCTCTCCCCTTCCGAATAAATCAATAG

Protein Analysis

331

Amino Acids

36.87

Weight (kDa)

9.93

Isoelectric Point (pI)

66.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 2 - 68 6.1e-17 Double-stranded RNA binding motif
dsrm PF00035 88 - 153 1.1e-13 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28380
fragaria_vesca FvH4_3g32200
malus_domestica MD03G1118400.v1.1 MD11G1136700.v1.1
prunus_persica Prupe.6G102200_v2.0.a1
pyrus_communis pycom11g11320
rosa_chinensis RchiOBHm_Chr5g0058811
rosa_laevigata RLG00000035253
rosa_multiflora Rmu_sc0005457.1_g000002
rosa_roxburghii Rroxscaffold_1G00021580
rosa_rugosa Rorug05G0319300
rosa_samantha Rh5AG384100 Rh5BG396000 Rh5CG419900 Rh5DG411800
rosa_wichuraiana Rw5G036190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 493
AccB1I GGYRCC 2 cut(s) 342, 718
AccB7I CCANNNNNTGG 2 cut(s) 715, 782
AccII CGCG 3 cut(s) 89, 213, 640
AciI CCGC 6 cut(s) 177, 180, 211, 213, 234, 311
AclWI GGATC 2 cut(s) 884, 922
AcvI CACGTG 1 cut(s) 63
AfaI GTAC 4 cut(s) 5, 317, 600, 819
AfiI CCNNNNNNNGG 4 cut(s) 277, 662, 715, 782
AflIII ACRYGT 2 cut(s) 60, 638
AgeI ACCGGT 2 cut(s) 832, 874
AgsI TTSAA 3 cut(s) 46, 100, 371
AjnI CCWGG 2 cut(s) 781, 795
AjuI GAANNNNNNNTTGG 2 cut(s) 595, 627
AloI GAACNNNNNNTCC 2 cut(s) 792, 824
AluBI AGCT 9 cut(s) 16, 25, 39, 302, 446, 474, 671, 851, 952
AluI AGCT 9 cut(s) 16, 25, 39, 302, 446, 474, 671, 851, 952
Alw21I GWGCWC 2 cut(s) 174, 304
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 2 cut(s) 884, 922
AoxI GGCC 5 cut(s) 27, 102, 165, 214, 334
ApeKI GCWGC 7 cut(s) 16, 39, 434, 443, 659, 668, 866
AsiGI ACCGGT 2 cut(s) 832, 874
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 3 cut(s) 28, 77, 215
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 889
AvaII GGWCC 1 cut(s) 77
BaeGI GKGCMC 2 cut(s) 345, 750
BanI GGYRCC 2 cut(s) 342, 718
BanII GRGCYC 2 cut(s) 140, 304
BbrPI CACGTG 1 cut(s) 63
Bbv12I GWGCWC 2 cut(s) 174, 304
BbvI GCAGC 7 cut(s) 3, 26, 421, 455, 646, 680, 853
BccI CCATC 4 cut(s) 515, 627, 692, 709
BceAI ACGGC 1 cut(s) 136
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciT130I CCWGG 2 cut(s) 783, 797
BciVI GTATCC 1 cut(s) 234
BcnI CCSGG 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 660
BfuI GTATCC 1 cut(s) 234
BglII AGATCT 1 cut(s) 126
BlpI GCTNAGC 1 cut(s) 852
Bme1390I CCNGG 3 cut(s) 361, 783, 797
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 3 cut(s) 28, 77, 215
BmiI GGNNCC 5 cut(s) 79, 217, 344, 720, 828
BmrFI CCNGG 3 cut(s) 361, 783, 797
BmsI GCATC 1 cut(s) 799
Bpu1102I GCTNAGC 1 cut(s) 852
BpuMI CCSGG 1 cut(s) 361
BsaAI YACGTR 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 571
BsaJI CCNNGG 4 cut(s) 183, 211, 337, 796
BsaWI WCCGGW 2 cut(s) 832, 874
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 662, 715, 782
Bse118I RCCGGY 2 cut(s) 832, 874
Bse1I ACTGG 4 cut(s) 249, 627, 725, 914
Bse3DI GCAATG 2 cut(s) 305, 444
Bse8I GATNNNNATC 1 cut(s) 571
BseBI CCWGG 2 cut(s) 783, 797
BseDI CCNNGG 4 cut(s) 183, 211, 337, 796
BseGI GGATG 5 cut(s) 253, 684, 720, 906, 938
BseJI GATNNNNATC 1 cut(s) 571
BseLI CCNNNNNNNGG 4 cut(s) 277, 662, 715, 782
BseMI GCAATG 2 cut(s) 305, 444
BseMII CTCAG 2 cut(s) 489, 843
BseNI ACTGG 4 cut(s) 249, 627, 725, 914
BseSI GKGCMC 2 cut(s) 345, 750
BseXI GCAGC 7 cut(s) 3, 26, 421, 455, 646, 680, 853
BseYI CCCAGC 1 cut(s) 400
BsgI GTGCAG 1 cut(s) 744
Bsh1236I CGCG 3 cut(s) 89, 213, 640
BshFI GGCC 5 cut(s) 29, 104, 167, 216, 336
BshNI GGYRCC 2 cut(s) 342, 718
BshTI ACCGGT 2 cut(s) 832, 874
BsiHKAI GWGCWC 2 cut(s) 174, 304
BsiSI CCGG 3 cut(s) 360, 833, 875
BsiWI CGTACG 1 cut(s) 817
BslFI GGGAC 3 cut(s) 63, 376, 665
BslI CCNNNNNNNGG 4 cut(s) 277, 662, 715, 782
BsmAI GTCTC 1 cut(s) 245
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 3 cut(s) 63, 376, 665
BsmI GAATGC 3 cut(s) 66, 436, 583
BsnI GGCC 5 cut(s) 29, 104, 167, 216, 336
Bsp1286I GDGCHC 5 cut(s) 140, 174, 304, 345, 750
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 4 cut(s) 126, 889, 903, 927
Bsp1720I GCTNAGC 1 cut(s) 852
BspACI CCGC 6 cut(s) 177, 180, 211, 213, 234, 311
BspANI GGCC 5 cut(s) 29, 104, 167, 216, 336
BspCNI CTCAG 2 cut(s) 488, 844
BspFNI CGCG 3 cut(s) 89, 213, 640
BspLI GGNNCC 5 cut(s) 79, 217, 344, 720, 828
BspMAI CTGCAG 1 cut(s) 664
BspPI GGATC 2 cut(s) 884, 922
BspT107I GGYRCC 2 cut(s) 342, 718
BsrDI GCAATG 2 cut(s) 305, 444
BsrFI RCCGGY 2 cut(s) 832, 874
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 4 cut(s) 249, 627, 725, 914
BssAI RCCGGY 2 cut(s) 832, 874
BssECI CCNNGG 4 cut(s) 183, 211, 337, 796
BssMI GATC 4 cut(s) 126, 889, 903, 927
BssT1I CCWWGG 1 cut(s) 337
Bst2UI CCWGG 2 cut(s) 783, 797
Bst4CI ACNGT 2 cut(s) 109, 367
Bst6I CTCTTC 1 cut(s) 877
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 27, 552, 849
BstDEI CTNAG 2 cut(s) 475, 852
BstDSI CCRYGG 1 cut(s) 211
BstENI CCTNNNNNAGG 2 cut(s) 275, 660
BstF5I GGATG 5 cut(s) 253, 684, 720, 906, 938
BstFNI CGCG 3 cut(s) 89, 213, 640
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 4 cut(s) 129, 892, 906, 930
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 4 cut(s) 126, 889, 903, 927
BstMWI GCNNNNNNNGC 9 cut(s) 22, 188, 440, 443, 665, 668, 853, 958, 967
BstNI CCWGG 2 cut(s) 783, 797
BstSCI CCNGG 3 cut(s) 359, 781, 795
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 2 cut(s) 345, 750
BstUI CGCG 3 cut(s) 89, 213, 640
BstV1I GCAGC 7 cut(s) 3, 26, 421, 455, 646, 680, 853
BstX2I RGATCY 2 cut(s) 126, 927
BstYI RGATCY 2 cut(s) 126, 927
BsuI GTATCC 1 cut(s) 234
BsuRI GGCC 5 cut(s) 29, 104, 167, 216, 336
BtgI CCRYGG 1 cut(s) 211
BtgZI GCGATG 1 cut(s) 776
BtsCI GGATG 5 cut(s) 253, 684, 720, 906, 938
BtsIMutI CAGTG 3 cut(s) 620, 732, 750
Cac8I GCNNGC 3 cut(s) 27, 552, 849
CfoI GCGC 1 cut(s) 91
Cfr10I RCCGGY 2 cut(s) 832, 874
Cfr13I GGNCC 3 cut(s) 28, 77, 215
Cfr42I CCGCGG 1 cut(s) 214
CseI GACGC 2 cut(s) 629, 646
Csp6I GTAC 4 cut(s) 4, 316, 599, 818
CspAI ACCGGT 2 cut(s) 832, 874
CviQI GTAC 4 cut(s) 4, 316, 599, 818
DdeI CTNAG 2 cut(s) 475, 852
DpnI GATC 4 cut(s) 128, 891, 905, 929
DpnII GATC 4 cut(s) 126, 889, 903, 927
DrdI GACNNNNNNGTC 1 cut(s) 493
DseDI GACNNNNNNGTC 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 877
EarI CTCTTC 1 cut(s) 877
EciI GGCGGA 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 337
Eco24I GRGCYC 2 cut(s) 140, 304
Eco47I GGWCC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 302
Eco72I CACGTG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 302
EcoNI CCTNNNNNAGG 2 cut(s) 275, 660
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 781, 795
EcoT14I CCWWGG 1 cut(s) 337
EcoT38I GRGCYC 2 cut(s) 140, 304
ErhI CCWWGG 1 cut(s) 337
Esp3I CGTCTC 1 cut(s) 245
FaiI YATR 5 cut(s) 516, 678, 711, 734, 842
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 3 cut(s) 63, 376, 665
FokI GGATG 5 cut(s) 260, 671, 727, 913, 925
FriOI GRGCYC 2 cut(s) 140, 304
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 90
GsaI CCCAGC 1 cut(s) 404
HaeIII GGCC 5 cut(s) 29, 104, 167, 216, 336
HapII CCGG 3 cut(s) 360, 833, 875
HgaI GACGC 2 cut(s) 629, 646
HhaI GCGC 1 cut(s) 91
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 950
HinfI GANTC 5 cut(s) 381, 494, 567, 651, 700
HpaII CCGG 3 cut(s) 360, 833, 875
HphI GGTGA 1 cut(s) 889
Hpy166II GTNNAC 5 cut(s) 112, 262, 318, 498, 644
Hpy188I TCNGA 5 cut(s) 459, 478, 689, 894, 983
Hpy188III TCNNGA 4 cut(s) 71, 80, 133, 942
Hpy8I GTNNAC 5 cut(s) 112, 262, 318, 498, 644
HpyAV CCTTC 4 cut(s) 63, 68, 779, 988
HpyCH4III ACNGT 2 cut(s) 109, 367
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 8 cut(s) 19, 66, 150, 277, 437, 662, 761, 790
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 188, 440, 443, 665, 668, 853, 958, 967
HpyF3I CTNAG 2 cut(s) 475, 852
HpySE526I ACGT 1 cut(s) 62
HspAI GCGC 1 cut(s) 89
KspI CCGCGG 1 cut(s) 214
Kzo9I GATC 4 cut(s) 126, 889, 903, 927
LmnI GCTCC 7 cut(s) 36, 299, 307, 665, 676, 832, 874
Lsp1109I GCAGC 7 cut(s) 3, 26, 421, 455, 646, 680, 853
LweI GCATC 1 cut(s) 799
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 2 cut(s) 727, 835
MalI GATC 4 cut(s) 128, 891, 905, 929
MboI GATC 4 cut(s) 126, 889, 903, 927
MboII GAAGA 6 cut(s) 121, 439, 606, 894, 898, 937
MflI RGATCY 2 cut(s) 126, 927
MhlI GDGCHC 5 cut(s) 140, 174, 304, 345, 750
MluCI AATT 5 cut(s) 46, 282, 371, 464, 537
MluI ACGCGT 1 cut(s) 638
MlyI GAGTC 2 cut(s) 503, 694
MmeI TCCRAC 4 cut(s) 231, 277, 712, 934
MseI TTAA 1 cut(s) 117
MspA1I CMGCKG 2 cut(s) 16, 213
MspI CCGG 3 cut(s) 360, 833, 875
MspR9I CCNGG 3 cut(s) 361, 783, 797
Mva1269I GAATGC 3 cut(s) 66, 436, 583
MvaI CCWGG 2 cut(s) 783, 797
MvnI CGCG 3 cut(s) 89, 213, 640
MwoI GCNNNNNNNGC 9 cut(s) 22, 188, 440, 443, 665, 668, 853, 958, 967
NciI CCSGG 1 cut(s) 361
NdeII GATC 4 cut(s) 126, 889, 903, 927
NlaIV GGNNCC 5 cut(s) 79, 217, 344, 720, 828
NmeAIII GCCGAG 2 cut(s) 193, 208
NmuCI GTSAC 2 cut(s) 727, 835
PctI GAATGC 3 cut(s) 66, 436, 583
PfeI GAWTC 3 cut(s) 381, 567, 651
Pfl23II CGTACG 1 cut(s) 817
PflMI CCANNNNNTGG 2 cut(s) 715, 782
PfoI TCCNGGA 1 cut(s) 781
PinAI ACCGGT 2 cut(s) 832, 874
PleI GAGTC 2 cut(s) 502, 694
PmaCI CACGTG 1 cut(s) 63
PmlI CACGTG 1 cut(s) 63
PpsI GAGTC 2 cut(s) 502, 694
Ppu21I YACGTR 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 304
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 781, 795
PspCI CACGTG 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 2 cut(s) 781, 795
PspLI CGTACG 1 cut(s) 817
PspN4I GGNNCC 5 cut(s) 79, 217, 344, 720, 828
PspPI GGNCC 3 cut(s) 28, 77, 215
PspPPI RGGWCCY 1 cut(s) 77
PstI CTGCAG 1 cut(s) 664
PsuI RGATCY 2 cut(s) 126, 927
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 4 cut(s) 5, 317, 600, 819
RsaNI GTAC 4 cut(s) 4, 316, 599, 818
SacI GAGCTC 1 cut(s) 304
SacII CCGCGG 1 cut(s) 214
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 4 cut(s) 126, 889, 903, 927
Sau96I GGNCC 3 cut(s) 28, 77, 215
SchI GAGTC 2 cut(s) 503, 694
ScrFI CCNGG 3 cut(s) 361, 783, 797
SduI GDGCHC 5 cut(s) 140, 174, 304, 345, 750
SfaNI GCATC 1 cut(s) 799
SfcI CTRYAG 1 cut(s) 660
Sfr303I CCGCGG 1 cut(s) 214
SgrAI CRCCGGYG 1 cut(s) 874
SgrBI CCGCGG 1 cut(s) 214
SinI GGWCC 1 cut(s) 77
Sse9I AATT 5 cut(s) 46, 282, 371, 464, 537
SsiI CCGC 6 cut(s) 177, 180, 211, 213, 234, 311
SspMI CTAG 1 cut(s) 237
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 3 cut(s) 359, 781, 795
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 2 cut(s) 109, 367
TaiI ACGT 1 cut(s) 65
TaqI TCGA 3 cut(s) 132, 575, 918
TasI AATT 5 cut(s) 46, 282, 371, 464, 537
TatI WGTACW 2 cut(s) 3, 315
TauI GCSGC 4 cut(s) 182, 216, 236, 313
TfiI GAWTC 3 cut(s) 381, 567, 651
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 3 cut(s) 627, 732, 750
TseFI GTSAC 2 cut(s) 727, 835
TseI GCWGC 7 cut(s) 16, 39, 434, 443, 659, 668, 866
Tsp45I GTSAC 2 cut(s) 727, 835
TspDTI ATGAA 1 cut(s) 603
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 3 cut(s) 627, 732, 750
Van91I CCANNNNNTGG 2 cut(s) 715, 782
VpaK11BI GGWCC 1 cut(s) 77
XagI CCTNNNNNAGG 2 cut(s) 275, 660
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.