Rorug05G0319300

Double-stranded RNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
37846291 .. 37851501
5211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0319300.1

Sequence Viewer

Length: 1161 bp
ATGGTGATTCTTAATTTGGAGGCTGCTAAGGCAATGTGGGTTCTTTTGTTTCTTGAGGTTGTTGCTGAAATGGAAATGCTGACCAGAATTGAGGTCTCTACCTATCACCCAACCACCAAACCCAGCCCTAAAGAAACGCCTTTCATCCCTTTTAATCTCAGGCACCGTTGGATTCCCGGTTATCATCTTGATTCTGATCTCAGGCTCGTAGCGCACATATCCACTTCATCGAACAAGGACGACGACCGGGTCAGCGGTGACCCGAAAGCCCAAGCTTCTTGGATCGACGCTTATTTGCCCAGGCAGGCCCGCCCTTATGCTAAGCTCGCTCGCCTCGACAAGCCCATTGGCACCTGGTTGCTTGCTTGGCCTTGCATGTGGTCAATAACATTGGCAGCAACCCCAGGACACCTTCCTGATATTAAGATGTTGACACTATTTGGATGTGGGGCTTTGCTTTTAAGGGGCGCTGGATGTACCGTAAATGATCTTCTTGATCGGGATATTGACACCATGGTGGAACGTACAAAGTTGCGGCCAGTTGCGAGTGGTCTTTTGACACCTTTTAAAGGGTTGTGTTTTCTTGGATTTCAATTGCTTTTGGGTCTTGGAATTCTCCTCCAACTGAATAATTATAGCCGTGTTTTGGGGGCTTCGTCTTTGTTGCTAGTTTTCTCCTATCCCCTCATGAAAAGGTTGACATTCTGGCCTCAAGCATACCTAGGTTTGACCTTTAACTGGGGAGCTTTGTTAGGATGGGCTGCAATTAAAGGAAGCATTGATCCAGCTATAGTACTTCCATTGTACATTTCTGGAGTATTTTGGACACTTGCGTATGATACGATATATGCGCATCAGGATAAAGAAGATGATCTGAAGGTTGGTGTCAAATCTACCGCTTTGAGGTTTGGTGATTCAACAAAGGAGTGGATTACTGGGTTTGGAATCCTGTGCATCAGTAGTCTTGCCCTCAGTGGATATAATGCCGAAATTGGCTGGCCATATTATGCACTTTTGGCAGTTGCATCTGGACAATTAGCTTGGCAGATATGGACAGTTGACCTTTCATCCAGGCTTGATTGCAATAGAAAGTTTGTGTCGAACAAGTGGTTTGGTGCTATTATTTGCAGTGGAATCTTATTGGGAAGACTTTCATCATAG

Protein Analysis

386

Amino Acids

42.95

Weight (kDa)

8.73

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 122 - 367 8.1e-61 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28380
fragaria_vesca FvH4_3g32200
malus_domestica MD03G1118400.v1.1 MD11G1136700.v1.1
prunus_persica Prupe.6G102200_v2.0.a1
pyrus_communis pycom11g11320
rosa_chinensis RchiOBHm_Chr5g0058811
rosa_laevigata RLG00000035253
rosa_multiflora Rmu_sc0005457.1_g000002
rosa_roxburghii Rroxscaffold_1G00021580
rosa_rugosa Rorug05G0319300
rosa_samantha Rh5AG384100 Rh5BG396000 Rh5CG419900 Rh5DG411800
rosa_wichuraiana Rw5G036190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
Acc16I TGCGCA 1 cut(s) 852
AccB1I GGYRCC 2 cut(s) 162, 350
AciI CCGC 4 cut(s) 255, 310, 535, 897
AclWI GGATC 2 cut(s) 290, 776
AcoI YGGCCR 2 cut(s) 536, 998
AcsI RAATTY 1 cut(s) 612
AcuI CTGAAG 1 cut(s) 896
AfaI GTAC 4 cut(s) 478, 526, 795, 806
AfiI CCNNNNNNNGG 4 cut(s) 569, 646, 738, 903
AgsI TTSAA 2 cut(s) 593, 918
AjnI CCWGG 4 cut(s) 299, 353, 403, 1070
AleI CACNNNNGTG 1 cut(s) 515
AluBI AGCT 5 cut(s) 275, 325, 746, 788, 1040
AluI AGCT 5 cut(s) 275, 325, 746, 788, 1040
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 2 cut(s) 290, 776
AoxI GGCC 5 cut(s) 306, 368, 536, 707, 998
ApeKI GCWGC 3 cut(s) 23, 395, 761
ApoI RAATTY 1 cut(s) 612
Asp700I GAANNNNTTC 1 cut(s) 1150
AspA2I CCTAGG 1 cut(s) 721
AspLEI GCGC 3 cut(s) 214, 470, 853
AspS9I GGNCC 1 cut(s) 307
AsuC2I CCSGG 2 cut(s) 177, 248
AsuHPI GGTGA 4 cut(s) 16, 98, 269, 923
AvrII CCTAGG 1 cut(s) 721
BalI TGGCCA 1 cut(s) 1000
BanI GGYRCC 2 cut(s) 162, 350
BarI GAAGNNNNNNTAC 2 cut(s) 474, 506
BbsI GAAGAC 1 cut(s) 1153
BbvI GCAGC 3 cut(s) 10, 407, 748
BccI CCATC 1 cut(s) 750
BceAI ACGGC 1 cut(s) 624
BciT130I CCWGG 4 cut(s) 301, 355, 405, 1072
BcnI CCSGG 2 cut(s) 177, 248
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 2 cut(s) 668, 722
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 1 cut(s) 471
BisI GCNGC 4 cut(s) 24, 396, 536, 762
BlnI CCTAGG 1 cut(s) 721
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 4 cut(s) 25, 397, 537, 763
BmcAI AGTACT 1 cut(s) 795
Bme1390I CCNGG 6 cut(s) 177, 248, 301, 355, 405, 1072
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 164, 352
BmrFI CCNGG 6 cut(s) 177, 248, 301, 355, 405, 1072
BmrI ACTGGG 2 cut(s) 748, 945
BmsI GCATC 3 cut(s) 862, 963, 1034
BmuI ACTGGG 2 cut(s) 748, 945
BpiI GAAGAC 1 cut(s) 1153
BpmI CTGGAG 1 cut(s) 834
Bpu10I CCTNAGC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 74, 696
BpuMI CCSGG 2 cut(s) 177, 248
BsaBI GATNNNNATC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 4 cut(s) 299, 403, 513, 721
Bsc4I CCNNNNNNNGG 4 cut(s) 569, 646, 738, 903
Bse1I ACTGG 3 cut(s) 539, 743, 940
Bse3DI GCAATG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 4 cut(s) 301, 355, 405, 1072
BseDI CCNNGG 4 cut(s) 299, 403, 513, 721
BseGI GGATG 5 cut(s) 144, 449, 479, 761, 1067
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 4 cut(s) 569, 646, 738, 903
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 3 cut(s) 172, 214, 985
BseNI ACTGG 3 cut(s) 539, 743, 940
BseRI GAGGAG 1 cut(s) 608
BseXI GCAGC 3 cut(s) 10, 407, 748
BseYI CCCAGC 1 cut(s) 122
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 5 cut(s) 308, 370, 538, 709, 1000
BshNI GGYRCC 2 cut(s) 162, 350
BsiEI CGRYCG 1 cut(s) 247
BsiSI CCGG 2 cut(s) 177, 247
BslI CCNNNNNNNGG 4 cut(s) 569, 646, 738, 903
BsmAI GTCTC 1 cut(s) 100
BsnI GGCC 5 cut(s) 308, 370, 538, 709, 1000
Bso31I GGTCTC 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 804
Bsp143I GATC 6 cut(s) 196, 282, 487, 496, 781, 871
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 4 cut(s) 255, 310, 535, 897
BspANI GGCC 5 cut(s) 308, 370, 538, 709, 1000
BspCNI CTCAG 3 cut(s) 171, 213, 984
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 2 cut(s) 164, 352
BspPI GGATC 2 cut(s) 290, 776
BspT107I GGYRCC 2 cut(s) 162, 350
BspTNI GGTCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 804
BsrI ACTGG 3 cut(s) 539, 743, 940
BssECI CCNNGG 4 cut(s) 299, 403, 513, 721
BssMI GATC 6 cut(s) 196, 282, 487, 496, 781, 871
BssT1I CCWWGG 2 cut(s) 513, 721
Bst2UI CCWGG 4 cut(s) 301, 355, 405, 1072
Bst4CI ACNGT 3 cut(s) 167, 481, 1057
BstAUI TGTACA 1 cut(s) 804
BstC8I GCNNGC 6 cut(s) 306, 310, 327, 331, 363, 998
BstDEI CTNAG 5 cut(s) 27, 158, 200, 321, 971
BstDSI CCRYGG 1 cut(s) 513
BstEII GGTNACC 1 cut(s) 257
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 5 cut(s) 144, 449, 479, 761, 1067
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 3 cut(s) 214, 470, 853
BstKTI GATC 6 cut(s) 199, 285, 490, 499, 784, 874
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 6 cut(s) 196, 282, 487, 496, 781, 871
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 5 cut(s) 29, 211, 326, 367, 1016
BstNI CCWGG 4 cut(s) 301, 355, 405, 1072
BstNSI RCATGY 1 cut(s) 379
BstPI GGTNACC 1 cut(s) 257
BstSCI CCNGG 6 cut(s) 175, 246, 299, 353, 403, 1070
BstSFI CTRYAG 1 cut(s) 789
BstV1I GCAGC 3 cut(s) 10, 407, 748
BstV2I GAAGAC 1 cut(s) 1153
BsuRI GGCC 5 cut(s) 308, 370, 538, 709, 1000
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 5 cut(s) 144, 449, 479, 761, 1067
BtsI GCAGTG 1 cut(s) 1135
BtsIMutI CAGTG 2 cut(s) 979, 1135
Cac8I GCNNGC 6 cut(s) 306, 310, 327, 331, 363, 998
CciI TCATGA 1 cut(s) 687
CfoI GCGC 3 cut(s) 214, 470, 853
Cfr13I GGNCC 1 cut(s) 307
CseI GACGC 1 cut(s) 296
CsiI ACCWGGT 1 cut(s) 353
Csp6I GTAC 4 cut(s) 477, 525, 794, 805
CviAII CATG 3 cut(s) 376, 514, 688
CviQI GTAC 4 cut(s) 477, 525, 794, 805
DdeI CTNAG 5 cut(s) 27, 158, 200, 321, 971
DpnI GATC 6 cut(s) 198, 284, 489, 498, 783, 873
DpnII GATC 6 cut(s) 196, 282, 487, 496, 781, 871
DraI TTTAAA 1 cut(s) 568
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 2 cut(s) 536, 998
Eco130I CCWWGG 2 cut(s) 513, 721
Eco31I GGTCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 896
Eco91I GGTNACC 1 cut(s) 257
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoO65I GGTNACC 1 cut(s) 257
EcoRI GAATTC 1 cut(s) 612
EcoRII CCWGG 4 cut(s) 299, 353, 403, 1070
EcoT14I CCWWGG 2 cut(s) 513, 721
ErhI CCWWGG 2 cut(s) 513, 721
FaeI CATG 3 cut(s) 379, 517, 691
FatI CATG 3 cut(s) 375, 513, 687
FauI CCCGC 1 cut(s) 317
Fnu4HI GCNGC 4 cut(s) 24, 396, 536, 762
FokI GGATG 5 cut(s) 131, 456, 486, 768, 1054
Fsp4HI GCNGC 4 cut(s) 24, 396, 536, 762
FspAI RTGCGCAY 1 cut(s) 852
FspBI CTAG 2 cut(s) 668, 722
FspI TGCGCA 1 cut(s) 852
GlaI GCGC 3 cut(s) 213, 469, 852
GluI GCNGC 4 cut(s) 24, 396, 536, 762
GsaI CCCAGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 834
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 5 cut(s) 308, 370, 538, 709, 1000
HapII CCGG 2 cut(s) 177, 247
HgaI GACGC 1 cut(s) 296
HhaI GCGC 3 cut(s) 214, 470, 853
Hin1II CATG 3 cut(s) 379, 517, 691
Hin6I GCGC 3 cut(s) 212, 468, 851
HinP1I GCGC 3 cut(s) 212, 468, 851
HincII GTYRAC 3 cut(s) 432, 699, 1060
HindII GTYRAC 3 cut(s) 432, 699, 1060
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 6 cut(s) 7, 172, 191, 914, 945, 1134
HpaII CCGG 2 cut(s) 177, 247
HphI GGTGA 4 cut(s) 16, 98, 269, 923
Hpy166II GTNNAC 3 cut(s) 432, 699, 1060
Hpy188I TCNGA 2 cut(s) 196, 876
Hpy188III TCNNGA 9 cut(s) 53, 188, 416, 494, 500, 688, 813, 857, 1029
Hpy8I GTNNAC 3 cut(s) 432, 699, 1060
Hpy99I CGWCG 2 cut(s) 245, 290
HpyAV CCTTC 2 cut(s) 422, 871
HpyCH4III ACNGT 3 cut(s) 167, 481, 1057
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 7 cut(s) 375, 764, 954, 1010, 1025, 1083, 1128
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 211, 326, 367, 1016
HpyF3I CTNAG 5 cut(s) 27, 158, 200, 321, 971
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 3 cut(s) 379, 517, 691
HspAI GCGC 3 cut(s) 212, 468, 851
Kzo9I GATC 6 cut(s) 196, 282, 487, 496, 781, 871
LmnI GCTCC 1 cut(s) 743
Lsp1109I GCAGC 3 cut(s) 10, 407, 748
LweI GCATC 3 cut(s) 862, 963, 1034
MabI ACCWGGT 1 cut(s) 353
MaeI CTAG 2 cut(s) 668, 722
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 1 cut(s) 257
MalI GATC 6 cut(s) 198, 284, 489, 498, 783, 873
MboI GATC 6 cut(s) 196, 282, 487, 496, 781, 871
MboII GAAGA 3 cut(s) 482, 878, 1158
MfeI CAATTG 1 cut(s) 593
MlsI TGGCCA 1 cut(s) 1000
MluCI AATT 8 cut(s) 13, 87, 593, 612, 631, 765, 990, 1034
MluNI TGGCCA 1 cut(s) 1000
MmeI TCCRAC 2 cut(s) 149, 646
MnlI CCTC 9 cut(s) 13, 49, 85, 344, 629, 695, 720, 897, 980
Mox20I TGGCCA 1 cut(s) 1000
MroXI GAANNNNTTC 1 cut(s) 1150
MscI TGGCCA 1 cut(s) 1000
MseI TTAA 7 cut(s) 12, 153, 423, 461, 567, 735, 768
MslI CAYNNNNRTG 1 cut(s) 515
Msp20I TGGCCA 1 cut(s) 1000
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 2 cut(s) 177, 247
MspR9I CCNGG 6 cut(s) 177, 248, 301, 355, 405, 1072
MunI CAATTG 1 cut(s) 593
MvaI CCWGG 4 cut(s) 301, 355, 405, 1072
MwoI GCNNNNNNNGC 5 cut(s) 29, 211, 326, 367, 1016
NciI CCSGG 2 cut(s) 177, 248
NcoI CCATGG 1 cut(s) 513
NdeII GATC 6 cut(s) 196, 282, 487, 496, 781, 871
NlaIII CATG 3 cut(s) 379, 517, 691
NlaIV GGNNCC 2 cut(s) 164, 352
NmuCI GTSAC 1 cut(s) 257
NsbI TGCGCA 1 cut(s) 852
NspI RCATGY 1 cut(s) 379
OliI CACNNNNGTG 1 cut(s) 515
PagI TCATGA 1 cut(s) 687
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 1150
PfeI GAWTC 6 cut(s) 7, 172, 191, 914, 945, 1134
PflFI GACNNNGTC 1 cut(s) 248
PkrI GCNGC 4 cut(s) 25, 397, 537, 763
Psp6I CCWGG 4 cut(s) 299, 353, 403, 1070
PspEI GGTNACC 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 122
PspGI CCWGG 4 cut(s) 299, 353, 403, 1070
PspN4I GGNNCC 2 cut(s) 164, 352
PspPI GGNCC 1 cut(s) 307
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 4 cut(s) 478, 526, 795, 806
RsaNI GTAC 4 cut(s) 477, 525, 794, 805
RseI CAYNNNNRTG 1 cut(s) 515
SaqAI TTAA 7 cut(s) 12, 153, 423, 461, 567, 735, 768
SatI GCNGC 4 cut(s) 24, 396, 536, 762
Sau3AI GATC 6 cut(s) 196, 282, 487, 496, 781, 871
Sau96I GGNCC 1 cut(s) 307
ScaI AGTACT 1 cut(s) 795
ScrFI CCNGG 6 cut(s) 177, 248, 301, 355, 405, 1072
SexAI ACCWGGT 1 cut(s) 353
SfaNI GCATC 3 cut(s) 862, 963, 1034
SfcI CTRYAG 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 2 cut(s) 53, 711
SmoI CTYRAG 2 cut(s) 53, 711
Sse9I AATT 8 cut(s) 13, 87, 593, 612, 631, 765, 990, 1034
SsiI CCGC 4 cut(s) 255, 310, 535, 897
SspMI CTAG 2 cut(s) 668, 722
StyD4I CCNGG 6 cut(s) 175, 246, 299, 353, 403, 1070
StyI CCWWGG 2 cut(s) 513, 721
TaaI ACNGT 3 cut(s) 167, 481, 1057
TaiI ACGT 1 cut(s) 526
TaqI TCGA 4 cut(s) 230, 285, 336, 1100
TasI AATT 8 cut(s) 13, 87, 593, 612, 631, 765, 990, 1034
TatI WGTACW 2 cut(s) 793, 804
TauI GCSGC 1 cut(s) 538
TfiI GAWTC 6 cut(s) 7, 172, 191, 914, 945, 1134
Tru1I TTAA 7 cut(s) 12, 153, 423, 461, 567, 735, 768
Tru9I TTAA 7 cut(s) 12, 153, 423, 461, 567, 735, 768
TscAI CASTG 2 cut(s) 979, 1135
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 3 cut(s) 23, 395, 761
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 5 cut(s) 133, 216, 704, 1056, 1143
TspRI CASTG 2 cut(s) 979, 1135
Tth111I GACNNNGTC 1 cut(s) 248
XagI CCTNNNNNAGG 1 cut(s) 567
XapI RAATTY 1 cut(s) 612
XceI RCATGY 1 cut(s) 379
XmaJI CCTAGG 1 cut(s) 721
XmnI GAANNNNTTC 1 cut(s) 1150
XspI CTAG 2 cut(s) 668, 722
ZrmI AGTACT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.