Prupe.6G102200_v2.0.a1

Double-stranded RNA-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
7107873 .. 7111446
3574 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G102200.1

Sequence Viewer

Length: 1236 bp
ATGTACAAGAACCAGCTGCAAGAGCTGGCCCAAAGGAGCTGCTTCAATTTGCCTTCCTACACGTGCATTCGGGAAGGTCCAGACCACGCGCCCAGGTTCAAGGCCACCGTCAACTTTAACGGCGAGATCTTCGAGAGCCCTCAGTACTGCTCCACCCTCCGTCAGGCCGAGCACTCCGCCGCCGAGGTCGCCCTCAACTACCTCTCCAATCGCGGTCCCTCTCACTCTCTCGCCGCTAGGATTCTGGATGAGACGGGGGTTTACAAGAACCTCTTGCAGGAAATTGCTCAAAGAGTTGGAGCTCCATTACCGCAGTACACAACGTTCAGGTCTGGCCTTGGCCACCTACCTGTTTTCACTGGGACAGTTGAATTGGCTGGAATCACATTTACAGGGGAACCTGCTAAGAACAAAAAACAAGCTGAGAAGAATGCAGCAATGGCAGCTTGGTCATCTTTGAAGCAATTGGCAAAGGAAACTGCAAGTTCTTCATCTGAACCAGAGAACAATGATGAGCTGGAACAAATTACTATAGCACGAGCCTTGCTCACTTATCGTTTGAAGGAAAAGATGGCAAATCCAACTGCTCCAATACTATTTCCGAAGAAGTTTCCAGTTCATAACCCCAGACCTACAAGTCCACAGCCTCCATCTGCTCACACCTCAAAAATACTGCCCTTAATTTGCCAAAAGCAAGCTCCTCGCAGCAGACTCCAATCAAATGCAACAAATGATAATCGTATCCCATCATCACAGCCTTCTCCACTAGAAAGCCGTGTTTTGCGTCCCCATAGATTCCCTGCTGCAGGAGCAGCTCCCTATGTTCCCATCCGACAATTGAGGACTCCTTGCCATGGGATTGCACCGCCAGTGACAATAAGGACAGCAGTGCCTGTGTTCTCGGCACCACCACTTCCGCCACCTCCTGTGATGCCCTGCCAGGCAATGCGTGTCCCACCACTACGAGTGGCTCCACCTGTCACTATGAGGCAGGCTGTGCCTGTATTTTCTGCTCCACCGATTAGAAAAGATGATCCACCAACCACCCGGAAAGAAGATCCTCCAATCATTGTGAAAGAAGATCTTCCAGTCATTCGGAAAGCAGATCCTCCTGCTGTTATTGCTTCTTCCCCACAGAATGATTTGATAGCTCAAGTAGAGGAAACTGGAAGCGCATCTTCAAACAGTTTGCAGGAATCCAAGACAGTGCAAAGCTTGGAACAACTAAAAATTTGA

Protein Analysis

412

Amino Acids

44.94

Weight (kDa)

9.53

Isoelectric Point (pI)

65.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28380
fragaria_vesca FvH4_3g32200
malus_domestica MD03G1118400.v1.1 MD11G1136700.v1.1
prunus_persica Prupe.6G102200_v2.0.a1
pyrus_communis pycom11g11320
rosa_chinensis RchiOBHm_Chr5g0058811
rosa_laevigata RLG00000035253
rosa_multiflora Rmu_sc0005457.1_g000002
rosa_roxburghii Rroxscaffold_1G00021580
rosa_rugosa Rorug05G0319300
rosa_samantha Rh5AG384100 Rh5BG396000 Rh5CG419900 Rh5DG411800
rosa_wichuraiana Rw5G036190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 636
Acc36I ACCTGC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 904
AccII CGCG 2 cut(s) 89, 213
AciI CCGC 7 cut(s) 177, 180, 213, 234, 311, 866, 917
AclI AACGTT 1 cut(s) 323
AclWI GGATC 3 cut(s) 1028, 1052, 1100
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 1 cut(s) 1230
AcvI CACGTG 1 cut(s) 63
AfaI GTAC 3 cut(s) 5, 146, 317
AfiI CCNNNNNNNGG 4 cut(s) 163, 277, 806, 854
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 6 cut(s) 46, 100, 371, 460, 562, 1182
AjnI CCWGG 2 cut(s) 92, 939
Alw21I GWGCWC 2 cut(s) 174, 304
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 3 cut(s) 1028, 1052, 1100
AlwNI CAGNNNCTG 1 cut(s) 893
AoxI GGCC 5 cut(s) 27, 102, 165, 334, 340
ApeKI GCWGC 7 cut(s) 16, 39, 434, 443, 705, 803, 812
ApoI RAATTY 1 cut(s) 1230
Asp700I GAANNNNTTC 1 cut(s) 1083
AspLEI GCGC 2 cut(s) 91, 1175
AspS9I GGNCC 3 cut(s) 28, 77, 215
AsuC2I CCSGG 1 cut(s) 1048
AvaII GGWCC 2 cut(s) 77, 215
BalI TGGCCA 1 cut(s) 342
BanI GGYRCC 1 cut(s) 904
BanII GRGCYC 2 cut(s) 140, 304
BauI CACGAG 1 cut(s) 537
BbrPI CACGTG 1 cut(s) 63
Bbv12I GWGCWC 2 cut(s) 174, 304
BbvI GCAGC 7 cut(s) 3, 26, 446, 455, 717, 790, 824
BccI CCATC 4 cut(s) 565, 658, 754, 836
BceAI ACGGC 2 cut(s) 136, 759
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BciT130I CCWGG 2 cut(s) 94, 941
BciVI GTATCC 1 cut(s) 752
BcnI CCSGG 1 cut(s) 1048
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 2 cut(s) 237, 767
BfmI CTRYAG 2 cut(s) 531, 804
BfuAI ACCTGC 1 cut(s) 409
BfuI GTATCC 1 cut(s) 752
BglII AGATCT 2 cut(s) 126, 1081
BisI GCNGC 9 cut(s) 17, 40, 180, 234, 435, 444, 706, 804, 813
BlsI GCNGC 9 cut(s) 18, 41, 181, 235, 436, 445, 707, 805, 814
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 3 cut(s) 94, 941, 1048
Bme18I GGWCC 2 cut(s) 77, 215
BmgT120I GGNCC 3 cut(s) 28, 77, 215
BmiI GGNNCC 4 cut(s) 217, 399, 906, 972
BmrFI CCNGG 3 cut(s) 94, 941, 1048
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 2 cut(s) 921, 1184
BmuI ACTGGG 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 531, 563
BpuEI CTTGAG 1 cut(s) 1137
BpuMI CCSGG 1 cut(s) 1048
BsaAI YACGTR 1 cut(s) 63
BsaJI CCNNGG 4 cut(s) 92, 183, 337, 853
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 277, 806, 854
Bse1I ACTGG 5 cut(s) 364, 614, 869, 1088, 1171
Bse3DI GCAATG 2 cut(s) 444, 951
BseBI CCWGG 2 cut(s) 94, 941
BseDI CCNNGG 4 cut(s) 92, 183, 337, 853
BseGI GGATG 2 cut(s) 253, 828
BseLI CCNNNNNNNGG 4 cut(s) 163, 277, 806, 854
BseMI GCAATG 2 cut(s) 444, 951
BseMII CTCAG 2 cut(s) 155, 414
BseNI ACTGG 5 cut(s) 364, 614, 869, 1088, 1171
BseRI GAGGAG 1 cut(s) 690
BseXI GCAGC 7 cut(s) 3, 26, 446, 455, 717, 790, 824
Bsh1236I CGCG 2 cut(s) 89, 213
BshFI GGCC 5 cut(s) 29, 104, 167, 336, 342
BshNI GGYRCC 1 cut(s) 904
BsiHKAI GWGCWC 2 cut(s) 174, 304
BsiSI CCGG 1 cut(s) 1048
BslFI GGGAC 4 cut(s) 201, 376, 771, 938
BslI CCNNNNNNNGG 4 cut(s) 163, 277, 806, 854
BsmAI GTCTC 1 cut(s) 245
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 4 cut(s) 201, 376, 771, 938
BsmI GAATGC 2 cut(s) 66, 436
BsnI GGCC 5 cut(s) 29, 104, 167, 336, 342
Bsp1286I GDGCHC 3 cut(s) 140, 174, 304
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 126, 1033, 1057, 1081, 1105
Bsp19I CCATGG 1 cut(s) 853
BspACI CCGC 7 cut(s) 177, 180, 213, 234, 311, 866, 917
BspANI GGCC 5 cut(s) 29, 104, 167, 336, 342
BspCNI CTCAG 2 cut(s) 154, 415
BspFNI CGCG 2 cut(s) 89, 213
BspLI GGNNCC 4 cut(s) 217, 399, 906, 972
BspMAI CTGCAG 1 cut(s) 808
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 3 cut(s) 1028, 1052, 1100
BspT107I GGYRCC 1 cut(s) 904
BsrDI GCAATG 2 cut(s) 444, 951
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 5 cut(s) 364, 614, 869, 1088, 1171
BssECI CCNNGG 4 cut(s) 92, 183, 337, 853
BssMI GATC 5 cut(s) 126, 1033, 1057, 1081, 1105
BssSI CACGAG 1 cut(s) 537
BssT1I CCWWGG 2 cut(s) 337, 853
Bst2BI CACGAG 1 cut(s) 537
Bst2UI CCWGG 2 cut(s) 94, 941
Bst4CI ACNGT 4 cut(s) 109, 367, 1187, 1207
BstAPI GCANNNNNTGC 1 cut(s) 997
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 27, 696, 993
BstDEI CTNAG 3 cut(s) 141, 405, 423
BstDSI CCRYGG 1 cut(s) 853
BstENI CCTNNNNNAGG 3 cut(s) 161, 275, 804
BstF5I GGATG 2 cut(s) 253, 828
BstFNI CGCG 2 cut(s) 89, 213
BstHHI GCGC 2 cut(s) 91, 1175
BstKTI GATC 5 cut(s) 129, 1036, 1060, 1084, 1108
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 5 cut(s) 126, 1033, 1057, 1081, 1105
BstMWI GCNNNNNNNGC 8 cut(s) 22, 188, 440, 443, 809, 812, 997, 1121
BstNI CCWGG 2 cut(s) 94, 941
BstSCI CCNGG 3 cut(s) 92, 939, 1046
BstSFI CTRYAG 2 cut(s) 531, 804
BstUI CGCG 2 cut(s) 89, 213
BstV1I GCAGC 7 cut(s) 3, 26, 446, 455, 717, 790, 824
BstX2I RGATCY 4 cut(s) 126, 1057, 1081, 1105
BstYI RGATCY 4 cut(s) 126, 1057, 1081, 1105
BsuI GTATCC 1 cut(s) 752
BsuRI GGCC 5 cut(s) 29, 104, 167, 336, 342
BtgI CCRYGG 1 cut(s) 853
BtsCI GGATG 2 cut(s) 253, 828
BtsI GCAGTG 1 cut(s) 894
BtsIMutI CAGTG 4 cut(s) 357, 876, 894, 1212
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 3 cut(s) 27, 696, 993
CaiI CAGNNNCTG 1 cut(s) 893
CfoI GCGC 2 cut(s) 91, 1175
Cfr13I GGNCC 3 cut(s) 28, 77, 215
CseI GACGC 1 cut(s) 773
Csp6I GTAC 3 cut(s) 4, 145, 316
CviAII CATG 1 cut(s) 854
CviQI GTAC 3 cut(s) 4, 145, 316
DdeI CTNAG 3 cut(s) 141, 405, 423
DpnI GATC 5 cut(s) 128, 1035, 1059, 1083, 1107
DpnII GATC 5 cut(s) 126, 1033, 1057, 1081, 1105
DrdI GACNNNNNNGTC 1 cut(s) 636
DseDI GACNNNNNNGTC 1 cut(s) 636
EaeI YGGCCR 1 cut(s) 340
EciI GGCGGA 2 cut(s) 166, 906
Ecl136II GAGCTC 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 337, 853
Eco24I GRGCYC 2 cut(s) 140, 304
Eco47I GGWCC 2 cut(s) 77, 215
Eco53kI GAGCTC 1 cut(s) 302
Eco72I CACGTG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 302
EcoNI CCTNNNNNAGG 3 cut(s) 161, 275, 804
EcoRII CCWGG 2 cut(s) 92, 939
EcoT14I CCWWGG 2 cut(s) 337, 853
EcoT38I GRGCYC 2 cut(s) 140, 304
ErhI CCWWGG 2 cut(s) 337, 853
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 1 cut(s) 857
FaiI YATR 6 cut(s) 533, 621, 792, 822, 855, 986
FalI AAGNNNNNCTT 6 cut(s) 257, 289, 1068, 1100, 1162, 1194
FaqI GGGAC 4 cut(s) 201, 376, 771, 938
FatI CATG 1 cut(s) 853
Fnu4HI GCNGC 9 cut(s) 17, 40, 180, 234, 435, 444, 706, 804, 813
FokI GGATG 2 cut(s) 260, 815
FriOI GRGCYC 2 cut(s) 140, 304
Fsp4HI GCNGC 9 cut(s) 17, 40, 180, 234, 435, 444, 706, 804, 813
FspBI CTAG 2 cut(s) 237, 767
GlaI GCGC 2 cut(s) 90, 1174
GluI GCNGC 9 cut(s) 17, 40, 180, 234, 435, 444, 706, 804, 813
HaeIII GGCC 5 cut(s) 29, 104, 167, 336, 342
HapII CCGG 1 cut(s) 1048
HgaI GACGC 1 cut(s) 773
HhaI GCGC 2 cut(s) 91, 1175
Hin1II CATG 1 cut(s) 857
Hin6I GCGC 2 cut(s) 89, 1173
HinP1I GCGC 2 cut(s) 89, 1173
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 1213
HinfI GANTC 6 cut(s) 241, 381, 711, 795, 844, 1196
HpaII CCGG 1 cut(s) 1048
Hpy166II GTNNAC 4 cut(s) 112, 262, 318, 641
Hpy188I TCNGA 4 cut(s) 496, 603, 833, 1098
Hpy188III TCNNGA 4 cut(s) 71, 80, 133, 245
Hpy8I GTNNAC 4 cut(s) 112, 262, 318, 641
HpyAV CCTTC 4 cut(s) 63, 68, 556, 768
HpyCH4III ACNGT 4 cut(s) 109, 367, 1187, 1207
HpyCH4IV ACGT 2 cut(s) 62, 323
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 188, 440, 443, 809, 812, 997, 1121
HpyF3I CTNAG 3 cut(s) 141, 405, 423
HpySE526I ACGT 2 cut(s) 62, 323
Hsp92II CATG 1 cut(s) 857
HspAI GCGC 2 cut(s) 89, 1173
Kzo9I GATC 5 cut(s) 126, 1033, 1057, 1081, 1105
Lsp1109I GCAGC 7 cut(s) 3, 26, 446, 455, 717, 790, 824
LweI GCATC 2 cut(s) 921, 1184
MaeI CTAG 2 cut(s) 237, 767
MaeII ACGT 2 cut(s) 62, 323
MaeIII GTNAC 2 cut(s) 871, 979
MalI GATC 5 cut(s) 128, 1035, 1059, 1083, 1107
MboI GATC 5 cut(s) 126, 1033, 1057, 1081, 1105
MboII GAAGA 9 cut(s) 121, 439, 480, 616, 1067, 1076, 1091, 1119, 1170
MfeI CAATTG 2 cut(s) 464, 836
MflI RGATCY 4 cut(s) 126, 1057, 1081, 1105
MhlI GDGCHC 3 cut(s) 140, 174, 304
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 8 cut(s) 46, 282, 371, 464, 525, 681, 836, 1230
MluNI TGGCCA 1 cut(s) 342
MlyI GAGTC 2 cut(s) 705, 838
MmeI TCCRAC 3 cut(s) 277, 605, 856
Mox20I TGGCCA 1 cut(s) 342
MroXI GAANNNNTTC 1 cut(s) 1083
MscI TGGCCA 1 cut(s) 342
MseI TTAA 2 cut(s) 117, 680
Msp20I TGGCCA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 1 cut(s) 1048
MspR9I CCNGG 3 cut(s) 94, 941, 1048
MunI CAATTG 2 cut(s) 464, 836
Mva1269I GAATGC 2 cut(s) 66, 436
MvaI CCWGG 2 cut(s) 94, 941
MvnI CGCG 2 cut(s) 89, 213
MwoI GCNNNNNNNGC 8 cut(s) 22, 188, 440, 443, 809, 812, 997, 1121
NciI CCSGG 1 cut(s) 1048
NcoI CCATGG 1 cut(s) 853
NdeII GATC 5 cut(s) 126, 1033, 1057, 1081, 1105
NlaIII CATG 1 cut(s) 857
NlaIV GGNNCC 4 cut(s) 217, 399, 906, 972
NmeAIII GCCGAG 3 cut(s) 193, 208, 881
NmuCI GTSAC 2 cut(s) 871, 979
PctI GAATGC 2 cut(s) 66, 436
PdmI GAANNNNTTC 1 cut(s) 1083
PfeI GAWTC 4 cut(s) 241, 381, 795, 1196
PkrI GCNGC 9 cut(s) 18, 41, 181, 235, 436, 445, 707, 805, 814
PleI GAGTC 2 cut(s) 705, 838
PmaCI CACGTG 1 cut(s) 63
PmlI CACGTG 1 cut(s) 63
PpsI GAGTC 2 cut(s) 705, 838
Ppu21I YACGTR 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 304
Psp1406I AACGTT 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 92, 939
PspCI CACGTG 1 cut(s) 63
PspGI CCWGG 2 cut(s) 92, 939
PspN4I GGNNCC 4 cut(s) 217, 399, 906, 972
PspPI GGNCC 3 cut(s) 28, 77, 215
PsrI GAACNNNNNNTAC 2 cut(s) 308, 340
PstI CTGCAG 1 cut(s) 808
PstNI CAGNNNCTG 1 cut(s) 893
PsuI RGATCY 4 cut(s) 126, 1057, 1081, 1105
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 3 cut(s) 5, 146, 317
RsaNI GTAC 3 cut(s) 4, 145, 316
SacI GAGCTC 1 cut(s) 304
SaqAI TTAA 2 cut(s) 117, 680
SatI GCNGC 9 cut(s) 17, 40, 180, 234, 435, 444, 706, 804, 813
Sau3AI GATC 5 cut(s) 126, 1033, 1057, 1081, 1105
Sau96I GGNCC 3 cut(s) 28, 77, 215
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 2 cut(s) 705, 838
ScrFI CCNGG 3 cut(s) 94, 941, 1048
SduI GDGCHC 3 cut(s) 140, 174, 304
SfaNI GCATC 2 cut(s) 921, 1184
SfcI CTRYAG 2 cut(s) 531, 804
SinI GGWCC 2 cut(s) 77, 215
SmlI CTYRAG 1 cut(s) 1152
SmoI CTYRAG 1 cut(s) 1152
Sse9I AATT 8 cut(s) 46, 282, 371, 464, 525, 681, 836, 1230
SsiI CCGC 7 cut(s) 177, 180, 213, 234, 311, 866, 917
SspMI CTAG 2 cut(s) 237, 767
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 3 cut(s) 92, 939, 1046
StyI CCWWGG 2 cut(s) 337, 853
TaaI ACNGT 4 cut(s) 109, 367, 1187, 1207
TaiI ACGT 2 cut(s) 65, 326
TaqI TCGA 1 cut(s) 132
TasI AATT 8 cut(s) 46, 282, 371, 464, 525, 681, 836, 1230
TatI WGTACW 3 cut(s) 3, 144, 315
TauI GCSGC 2 cut(s) 182, 236
TfiI GAWTC 4 cut(s) 241, 381, 795, 1196
Tru1I TTAA 2 cut(s) 117, 680
Tru9I TTAA 2 cut(s) 117, 680
TscAI CASTG 4 cut(s) 364, 876, 894, 1212
TseFI GTSAC 2 cut(s) 871, 979
TseI GCWGC 7 cut(s) 16, 39, 434, 443, 705, 803, 812
Tsp45I GTSAC 2 cut(s) 871, 979
TspDTI ATGAA 2 cut(s) 480, 608
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 4 cut(s) 364, 876, 894, 1212
VpaK11BI GGWCC 2 cut(s) 77, 215
XagI CCTNNNNNAGG 3 cut(s) 161, 275, 804
XapI RAATTY 1 cut(s) 1230
XmnI GAANNNNTTC 1 cut(s) 1083
XspI CTAG 2 cut(s) 237, 767
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.