FvH4_3g37220

Universal stress protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016294
Physical Location & Seq
Reverse (-)
31866449 .. 31867463
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37220.t1

Sequence Viewer

Length: 486 bp
ATGACGAAGGACAGAAACTTAGGGTTTGCGGTGGATTTCTCGAAGGGAAGCAAGACTGCTCTGAAATGGGCTCTTCATAATCTGAGTGACAAAAGTGACACCTTGTATGTCATCCATGTCAAGCCTCAAGAAGGCAGTGAGAGCCGCAGCCTTCTTTGGTCTACCACCGGATCACCTCTGATTCCTTTTGCGGAGTTCCGTCAAAAGGACGTTATGGAGAACTACGAGGTTGAGCTTGATCAGGAGGTCTTGGAGTTGCTTGATACTGCTATTAAGCAAAAACATGTGACGGTGATAGCAAAGATCTACTGGGGAGATGCAAGAGACAAGCTTTGTGAAGCAGTGGAAGACTTAAAGCTCGACTGCTTGGTCCTTGGGAGCAGAGGCCTGGGCACCCTCCAAAGGGTGCTTCTGGGCAGTGTATCAAGCCACGTTATGGCGAATGCAAATTGTCCTGTTACAATTGTCAAGGATCAGAAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

162

Amino Acids

17.95

Weight (kDa)

6.08

Isoelectric Point (pI)

24.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 6 - 157 8.7e-29 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016294)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37220
malus_domestica MD03G1082800.v1.1
prunus_persica Prupe.6G067100_v2.0.a1
pyrus_communis pycom03g06590 pycom11g07560
rosa_chinensis RchiOBHm_Chr5g0066971
rosa_laevigata RLG00000035897
rosa_multiflora Rmu_sc0008378.1_g000004
rosa_roxburghii Rroxscaffold_1G00014160
rosa_rugosa Rorug05G0380100
rosa_samantha Rh5AG439800 Rh5BG456800 Rh5CG478900 Rh5DG471600
rosa_wichuraiana Rw5G041130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 436
AccI GTMKAC 1 cut(s) 161
AciI CCGC 3 cut(s) 29, 145, 191
AclWI GGATC 2 cut(s) 178, 480
AfiI CCNNNNNNNGG 5 cut(s) 131, 205, 402, 403, 436
AflIII ACRYGT 1 cut(s) 283
AjnI CCWGG 1 cut(s) 387
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 3 cut(s) 235, 331, 358
AluI AGCT 3 cut(s) 235, 331, 358
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 2 cut(s) 178, 480
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 2 cut(s) 165, 304
AvaII GGWCC 1 cut(s) 370
BaeGI GKGCMC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 389
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 318
BglII AGATCT 1 cut(s) 303
BisI GCNGC 2 cut(s) 145, 148
BlsI GCNGC 2 cut(s) 146, 149
Bme1390I CCNGG 1 cut(s) 389
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 1 cut(s) 389
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 373, 388
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 5 cut(s) 131, 205, 402, 403, 436
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 2 cut(s) 373, 388
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 5 cut(s) 131, 205, 402, 403, 436
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 395
BseXI GCAGC 1 cut(s) 159
BshFI GGCC 1 cut(s) 387
BshNI GGYRCC 1 cut(s) 392
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 5 cut(s) 131, 205, 402, 403, 436
BsmAI GTCTC 1 cut(s) 318
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 1 cut(s) 387
Bsp1286I GDGCHC 2 cut(s) 73, 395
Bsp143I GATC 4 cut(s) 170, 238, 303, 472
BspACI CCGC 3 cut(s) 29, 145, 191
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 394
BspPI GGATC 2 cut(s) 178, 480
BspQI GCTCTTC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 392
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 373, 388
BssMI GATC 4 cut(s) 170, 238, 303, 472
BssT1I CCWWGG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 19, 83
BstENI CCTNNNNNAGG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 4 cut(s) 173, 241, 306, 475
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 4 cut(s) 170, 238, 303, 472
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 395
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BsuRI GGCC 1 cut(s) 387
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 3 cut(s) 142, 348, 424
BtsIMutI CAGTG 3 cut(s) 142, 348, 424
Cfr13I GGNCC 1 cut(s) 370
CviAII CATG 2 cut(s) 116, 284
CviJI RGCY 9 cut(s) 71, 124, 144, 150, 235, 331, 358, 387, 429
CviKI_1 RGCY 9 cut(s) 71, 124, 144, 150, 235, 331, 358, 387, 429
DdeI CTNAG 2 cut(s) 19, 83
DpnI GATC 4 cut(s) 172, 240, 305, 474
DpnII GATC 4 cut(s) 170, 238, 303, 472
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 373
Eco147I AGGCCT 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 370
EcoNI CCTNNNNNAGG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 2 cut(s) 119, 287
FaiI YATR 6 cut(s) 78, 108, 117, 215, 285, 437
FatI CATG 2 cut(s) 115, 283
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 1 cut(s) 161
Fnu4HI GCNGC 2 cut(s) 145, 148
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 2 cut(s) 145, 148
GluI GCNGC 2 cut(s) 145, 148
HaeIII GGCC 1 cut(s) 387
HapII CCGG 1 cut(s) 168
Hin1II CATG 2 cut(s) 119, 287
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 1 cut(s) 181
HpaII CCGG 1 cut(s) 168
HphI GGTGA 2 cut(s) 165, 304
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 4 cut(s) 63, 84, 180, 477
Hpy188III TCNNGA 3 cut(s) 40, 128, 242
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 3 cut(s) 37, 125, 161
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 2 cut(s) 210, 432
HpyCH4V TGCA 2 cut(s) 320, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 2 cut(s) 19, 83
HpySE526I ACGT 2 cut(s) 210, 432
Hsp92II CATG 2 cut(s) 119, 287
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 4 cut(s) 170, 238, 303, 472
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 378
LpnPI CCDG 7 cut(s) 181, 227, 295, 374, 398, 401, 468
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 1 cut(s) 307
MaeII ACGT 2 cut(s) 210, 432
MaeIII GTNAC 4 cut(s) 86, 95, 286, 457
MalI GATC 4 cut(s) 172, 240, 305, 474
MboI GATC 4 cut(s) 170, 238, 303, 472
MboII GAAGA 2 cut(s) 65, 359
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 2 cut(s) 73, 395
MluCI AATT 2 cut(s) 448, 462
MnlI CCTC 6 cut(s) 135, 186, 220, 238, 377, 407
MseI TTAA 3 cut(s) 273, 353, 484
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 389
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeII GATC 4 cut(s) 170, 238, 303, 472
NlaIII CATG 2 cut(s) 119, 287
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 3 cut(s) 86, 95, 286
NspI RCATGY 1 cut(s) 287
PceI AGGCCT 1 cut(s) 387
PciI ACATGT 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 78
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 436
PkrI GCNGC 2 cut(s) 146, 149
PscI ACATGT 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 1 cut(s) 370
PsuI RGATCY 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 3 cut(s) 273, 353, 484
SatI GCNGC 2 cut(s) 145, 148
Sau3AI GATC 4 cut(s) 170, 238, 303, 472
Sau96I GGNCC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 2 cut(s) 73, 395
SetI ASST 9 cut(s) 104, 178, 213, 231, 237, 249, 333, 360, 435
SfaNI GCATC 1 cut(s) 307
SinI GGWCC 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 2 cut(s) 448, 462
SseBI AGGCCT 1 cut(s) 387
SsiI CCGC 3 cut(s) 29, 145, 191
StuI AGGCCT 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 387
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 2 cut(s) 213, 435
TaqI TCGA 2 cut(s) 41, 360
TasI AATT 2 cut(s) 448, 462
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 3 cut(s) 273, 353, 484
Tru9I TTAA 3 cut(s) 273, 353, 484
TscAI CASTG 3 cut(s) 142, 348, 424
TseFI GTSAC 3 cut(s) 86, 95, 286
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 3 cut(s) 86, 95, 286
TspDTI ATGAA 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 3 cut(s) 142, 348, 424
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 370
XagI CCTNNNNNAGG 1 cut(s) 129
XceI RCATGY 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.