MD03G1082800.v1.1

Universal stress protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016294
Physical Location & Seq
Forward (+)
6725529 .. 6726934
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1082800.v1.1.491

Sequence Viewer

Length: 489 bp
ATGACAAGGGATAGGAAAATCGGGGTAGCCGTAGATTTCTCAAAAGGAAGCAAGATTGCTCTAAAATGGGCCATTGATAATCTGAGCCAGGAAAAGGGCGATACCTTGTATGTCATCCATGTCAAGCCCTCCCAAGGCGATGAGAGTCGCAGCATTCTTTGGTCTTCCACCGGATCACCTCTGATTCCGTTCACAGAGTTCCGCGAAAAATCGGTGATGGAGAAGTACGAGGTTGAGCTTGATGCAGAGGTCTTGGAGTTGCTTGAGACTGCGTCTAGGCAGAAACATGTGACTGTCGTGGCGAAGCTCTACTGGGGAGATGCAAGAGAGAAACTTTGTGGGGCAGCTGAAGAACTAAAGCTTGACTGTTTGGTCATTGGCAGCAGGGGCCTTGGTACCATCCAAAGGGTGCTGCTGGGAAGCGTGTCCAGCTACGTTATGGCAAATGCAGAGTGCCCCGTTACCGTTGTCAAGGATCATAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

163

Amino Acids

17.9

Weight (kDa)

5.95

Isoelectric Point (pI)

28.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 158 5.2e-32 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016294)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37220
malus_domestica MD03G1082800.v1.1
prunus_persica Prupe.6G067100_v2.0.a1
pyrus_communis pycom03g06590 pycom11g07560
rosa_chinensis RchiOBHm_Chr5g0066971
rosa_laevigata RLG00000035897
rosa_multiflora Rmu_sc0008378.1_g000004
rosa_roxburghii Rroxscaffold_1G00014160
rosa_rugosa Rorug05G0380100
rosa_samantha Rh5AG439800 Rh5BG456800 Rh5CG478900 Rh5DG471600
rosa_wichuraiana Rw5G041130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 371
Acc65I GGTACC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 395
AccII CGCG 1 cut(s) 204
AciI CCGC 1 cut(s) 202
AclWI GGATC 2 cut(s) 181, 483
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 2 cut(s) 227, 397
AfiI CCNNNNNNNGG 3 cut(s) 94, 134, 405
AflIII ACRYGT 1 cut(s) 286
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 5 cut(s) 238, 307, 347, 361, 432
AluI AGCT 5 cut(s) 238, 307, 347, 361, 432
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 2 cut(s) 181, 483
AoxI GGCC 2 cut(s) 69, 388
ApeKI GCWGC 4 cut(s) 150, 344, 381, 412
Asp718I GGTACC 1 cut(s) 395
AspS9I GGNCC 2 cut(s) 69, 388
AsuHPI GGTGA 2 cut(s) 168, 226
BaeGI GKGCMC 1 cut(s) 458
BanI GGYRCC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 156
BbvI GCAGC 4 cut(s) 162, 356, 393, 399
BccI CCATC 2 cut(s) 211, 407
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 1 cut(s) 276
BisI GCNGC 4 cut(s) 151, 345, 382, 413
BlsI GCNGC 4 cut(s) 152, 346, 383, 414
Bme1390I CCNGG 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 69, 388
BmiI GGNNCC 2 cut(s) 389, 397
BmrFI CCNGG 1 cut(s) 89
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 2 cut(s) 232, 310
BmuI ACTGGG 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 133, 391
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 134, 405
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 133, 391
BseGI GGATG 2 cut(s) 114, 399
BseLI CCNNNNNNNGG 3 cut(s) 94, 134, 405
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 458
BseXI GCAGC 4 cut(s) 162, 356, 393, 399
BseYI CCCAGC 1 cut(s) 415
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 2 cut(s) 71, 390
BshNI GGYRCC 1 cut(s) 395
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 3 cut(s) 94, 134, 405
BsmAI GTCTC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 2 cut(s) 71, 390
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 2 cut(s) 173, 475
BspACI CCGC 1 cut(s) 202
BspANI GGCC 2 cut(s) 71, 390
BspCNI CTCAG 1 cut(s) 75
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 2 cut(s) 389, 397
BspPI GGATC 2 cut(s) 181, 483
BspT107I GGYRCC 1 cut(s) 395
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 133, 391
BssMI GATC 2 cut(s) 173, 475
BssT1I CCWWGG 2 cut(s) 133, 391
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 295, 368, 466
BstDEI CTNAG 1 cut(s) 83
BstF5I GGATG 2 cut(s) 114, 399
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 2 cut(s) 176, 478
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 173, 475
BstMWI GCNNNNNNNGC 2 cut(s) 387, 429
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 458
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 4 cut(s) 162, 356, 393, 399
BstV2I GAAGAC 1 cut(s) 156
BsuRI GGCC 2 cut(s) 71, 390
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 114, 399
Cfr13I GGNCC 2 cut(s) 69, 388
CseI GACGC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 226, 396
CviAII CATG 2 cut(s) 119, 287
CviQI GTAC 2 cut(s) 226, 396
DdeI CTNAG 1 cut(s) 83
DpnI GATC 2 cut(s) 175, 477
DpnII GATC 2 cut(s) 173, 475
DrdI GACNNNNNNGTC 1 cut(s) 371
DseDI GACNNNNNNGTC 1 cut(s) 371
Eco130I CCWWGG 2 cut(s) 133, 391
Eco57I CTGAAG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 2 cut(s) 133, 391
ErhI CCWWGG 2 cut(s) 133, 391
FaeI CATG 2 cut(s) 122, 290
FaiI YATR 5 cut(s) 111, 120, 288, 440, 480
FatI CATG 2 cut(s) 118, 286
Fnu4HI GCNGC 4 cut(s) 151, 345, 382, 413
FokI GGATG 2 cut(s) 101, 386
Fsp4HI GCNGC 4 cut(s) 151, 345, 382, 413
FspBI CTAG 1 cut(s) 276
GluI GCNGC 4 cut(s) 151, 345, 382, 413
GsaI CCCAGC 1 cut(s) 419
HaeIII GGCC 2 cut(s) 71, 390
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 261
Hin1II CATG 2 cut(s) 122, 290
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 2 cut(s) 145, 184
HpaII CCGG 1 cut(s) 171
HphI GGTGA 2 cut(s) 168, 226
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 84, 183
Hpy8I GTNNAC 1 cut(s) 192
HpyCH4III ACNGT 3 cut(s) 295, 368, 466
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 3 cut(s) 245, 323, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 387, 429
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 2 cut(s) 122, 290
KpnI GGTACC 1 cut(s) 399
Kzo9I GATC 2 cut(s) 173, 475
LpnPI CCDG 7 cut(s) 74, 101, 184, 298, 370, 401, 442
Lsp1109I GCAGC 4 cut(s) 162, 356, 393, 399
LweI GCATC 2 cut(s) 232, 310
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 289, 460
MalI GATC 2 cut(s) 175, 477
MboI GATC 2 cut(s) 173, 475
MboII GAAGA 2 cut(s) 156, 362
MhlI GDGCHC 1 cut(s) 458
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 4 cut(s) 139, 189, 223, 241
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 387, 429
NdeII GATC 2 cut(s) 173, 475
NlaIII CATG 2 cut(s) 122, 290
NlaIV GGNNCC 2 cut(s) 389, 397
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 1 cut(s) 290
PciI ACATGT 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PctI GAATGC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 184
PflFI GACNNNGTC 1 cut(s) 271
PkrI GCNGC 4 cut(s) 152, 346, 383, 414
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PscI ACATGT 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 415
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 389, 397
PspPI GGNCC 2 cut(s) 69, 388
PsyI GACNNNGTC 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 2 cut(s) 227, 397
RsaNI GTAC 2 cut(s) 226, 396
SatI GCNGC 4 cut(s) 151, 345, 382, 413
Sau3AI GATC 2 cut(s) 173, 475
Sau96I GGNCC 2 cut(s) 69, 388
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 2 cut(s) 232, 310
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SsiI CCGC 1 cut(s) 202
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 2 cut(s) 133, 391
TaaI ACNGT 3 cut(s) 295, 368, 466
TaiI ACGT 1 cut(s) 438
TfiI GAWTC 1 cut(s) 184
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 4 cut(s) 150, 344, 381, 412
Tsp45I GTSAC 1 cut(s) 289
TspGWI ACGGA 1 cut(s) 177
Tth111I GACNNNGTC 1 cut(s) 271
XceI RCATGY 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.