Prupe.6G067100_v2.0.a1

Universal stress protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016294
Physical Location & Seq
Forward (+)
4638911 .. 4640109
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G067100.1

Sequence Viewer

Length: 489 bp
ATGACAAGAGATAGAAACATAGGGGTGGCCGTCGATTTCTCAAAGGGAAGCAAGATTGCTCTGAAATGGGCTATCAATAATCTGGCTCATGAAAAGGGTGACACCTTGTATGCTATCCATGTCAAGCCCTCTCAGGGCGATGAGAGCCGCAACCTTCTTTGGTCCACCACCGGATCACCTCTGATTCCATTGGAGGAGTTCCGTCAAAAAGCGGTGATGGAGAACTATGAAGTCGAGGTCGATCCGGAGGTCTTGGACTTGCTTGACACTGCACACAGGCAGAAACATGTGACGGTGGTGGCAAAGCTTTACTGGGGTGATGCGAGAGAGAAACTTTGTGGGGCAGTCGAAGATCTAAAGCTTGACTGCTTGGTCCTTGGAAGCAGGGGACTTGGTACCATCCAAAGGGTGCTGCTGGGAAGTGTGTCCAGCTACGTTATGGCAAATGCAACCTGCGCCGTCACCATTGTCAAGGATCACAGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

163

Amino Acids

17.83

Weight (kDa)

6.2

Isoelectric Point (pI)

18.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016294)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37220
malus_domestica MD03G1082800.v1.1
prunus_persica Prupe.6G067100_v2.0.a1
pyrus_communis pycom03g06590 pycom11g07560
rosa_chinensis RchiOBHm_Chr5g0066971
rosa_laevigata RLG00000035897
rosa_multiflora Rmu_sc0008378.1_g000004
rosa_roxburghii Rroxscaffold_1G00014160
rosa_rugosa Rorug05G0380100
rosa_samantha Rh5AG439800 Rh5BG456800 Rh5CG478900 Rh5DG471600
rosa_wichuraiana Rw5G041130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 461
Acc65I GGTACC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 395
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 2 cut(s) 148, 212
AclWI GGATC 3 cut(s) 181, 236, 483
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 2 cut(s) 134, 405
AflIII ACRYGT 1 cut(s) 286
AluBI AGCT 3 cut(s) 307, 361, 432
AluI AGCT 3 cut(s) 307, 361, 432
AlwI GGATC 3 cut(s) 181, 236, 483
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 412
Asp718I GGTACC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 2 cut(s) 162, 373
AsuHPI GGTGA 5 cut(s) 110, 168, 226, 329, 454
AvaII GGWCC 2 cut(s) 162, 373
BanI GGYRCC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 399
BccI CCATC 2 cut(s) 211, 407
BceAI ACGGC 2 cut(s) 14, 443
BfuAI ACCTGC 1 cut(s) 461
BglII AGATCT 1 cut(s) 352
BisI GCNGC 2 cut(s) 148, 413
BlsI GCNGC 2 cut(s) 149, 414
Bme18I GGWCC 2 cut(s) 162, 373
BmgT120I GGNCC 2 cut(s) 162, 373
BmiI GGNNCC 1 cut(s) 397
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 376
BsaWI WCCGGW 2 cut(s) 170, 244
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 405
Bse1I ACTGG 1 cut(s) 317
BseAI TCCGGA 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 1 cut(s) 399
BseLI CCNNNNNNNGG 2 cut(s) 134, 405
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 399
BseYI CCCAGC 1 cut(s) 415
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 395
BsiSI CCGG 2 cut(s) 171, 245
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 2 cut(s) 134, 405
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 1 cut(s) 29
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 4 cut(s) 173, 241, 352, 475
BspACI CCGC 2 cut(s) 148, 212
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 145
BspEI TCCGGA 1 cut(s) 244
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 397
BspMI ACCTGC 1 cut(s) 461
BspPI GGATC 3 cut(s) 181, 236, 483
BspT107I GGYRCC 1 cut(s) 395
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 4 cut(s) 173, 241, 352, 475
BssT1I CCWWGG 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 295, 482
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 399
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 4 cut(s) 176, 244, 355, 478
BstMBI GATC 4 cut(s) 173, 241, 352, 475
BstMWI GCNNNNNNNGC 2 cut(s) 144, 455
BstNSI RCATGY 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 399
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 267, 487
BveI ACCTGC 1 cut(s) 461
CciI TCATGA 1 cut(s) 88
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 2 cut(s) 162, 373
Csp6I GTAC 1 cut(s) 396
CviAII CATG 3 cut(s) 89, 119, 287
CviJI RGCY 8 cut(s) 29, 71, 86, 127, 147, 307, 361, 432
CviKI_1 RGCY 8 cut(s) 29, 71, 86, 127, 147, 307, 361, 432
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 1 cut(s) 132
DpnI GATC 4 cut(s) 175, 243, 354, 477
DpnII GATC 4 cut(s) 173, 241, 352, 475
DrdI GACNNNNNNGTC 1 cut(s) 371
DseDI GACNNNNNNGTC 1 cut(s) 371
EaeI YGGCCR 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 162, 373
EcoT14I CCWWGG 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 3 cut(s) 92, 122, 290
FaiI YATR 7 cut(s) 20, 90, 111, 120, 228, 288, 440
FaqI GGGAC 1 cut(s) 402
FatI CATG 3 cut(s) 88, 118, 286
Fnu4HI GCNGC 2 cut(s) 148, 413
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 2 cut(s) 148, 413
GlaI GCGC 1 cut(s) 457
GluI GCNGC 2 cut(s) 148, 413
GsaI CCCAGC 1 cut(s) 419
HaeIII GGCC 1 cut(s) 29
HapII CCGG 2 cut(s) 171, 245
HhaI GCGC 1 cut(s) 458
Hin1II CATG 3 cut(s) 92, 122, 290
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HindIII AAGCTT 2 cut(s) 305, 359
HinfI GANTC 1 cut(s) 184
HpaII CCGG 2 cut(s) 171, 245
HphI GGTGA 5 cut(s) 110, 168, 226, 329, 454
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 2 cut(s) 63, 183
Hpy188III TCNNGA 2 cut(s) 89, 245
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 2 cut(s) 295, 482
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 2 cut(s) 272, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 455
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 3 cut(s) 92, 122, 290
HspAI GCGC 1 cut(s) 456
Kpn2I TCCGGA 1 cut(s) 244
KpnI GGTACC 1 cut(s) 399
Kzo9I GATC 4 cut(s) 173, 241, 352, 475
Lsp1109I GCAGC 1 cut(s) 399
LweI GCATC 1 cut(s) 310
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 3 cut(s) 98, 289, 460
MalI GATC 4 cut(s) 175, 243, 354, 477
MboI GATC 4 cut(s) 173, 241, 352, 475
MboII GAAGA 1 cut(s) 362
MflI RGATCY 1 cut(s) 352
MnlI CCTC 5 cut(s) 139, 187, 189, 229, 241
MroI TCCGGA 1 cut(s) 244
MseI TTAA 1 cut(s) 487
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 2 cut(s) 171, 245
MwoI GCNNNNNNNGC 2 cut(s) 144, 455
NdeII GATC 4 cut(s) 173, 241, 352, 475
NlaIII CATG 3 cut(s) 92, 122, 290
NlaIV GGNNCC 1 cut(s) 397
NmuCI GTSAC 3 cut(s) 98, 289, 460
NspI RCATGY 1 cut(s) 290
PagI TCATGA 1 cut(s) 88
PciI ACATGT 1 cut(s) 286
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 2 cut(s) 149, 414
PscI ACATGT 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 2 cut(s) 162, 373
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 487
SatI GCNGC 2 cut(s) 148, 413
Sau3AI GATC 4 cut(s) 173, 241, 352, 475
Sau96I GGNCC 2 cut(s) 162, 373
SfaNI GCATC 1 cut(s) 310
SinI GGWCC 2 cut(s) 162, 373
SmiMI CAYNNNNRTG 1 cut(s) 23
SsiI CCGC 2 cut(s) 148, 212
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 2 cut(s) 295, 482
TaiI ACGT 1 cut(s) 438
TaqI TCGA 4 cut(s) 33, 234, 240, 348
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 487
Tru9I TTAA 1 cut(s) 487
TscAI CASTG 2 cut(s) 274, 487
TseFI GTSAC 3 cut(s) 98, 289, 460
TseI GCWGC 1 cut(s) 412
Tsp45I GTSAC 3 cut(s) 98, 289, 460
TspDTI ATGAA 2 cut(s) 105, 243
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 2 cut(s) 274, 487
VpaK11BI GGWCC 2 cut(s) 162, 373
XceI RCATGY 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.