pycom11g07560

Universal stress protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0016294
Physical Location & Seq
Forward (+)
5829096 .. 5830140
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07560.1

Sequence Viewer

Length: 489 bp
ATGACAAGGGATAGGAAAATCGGGGTGGCCGTAGATTTCTCCAAAGGATGCAAGCTTGCTCTAAAATGGGCCATCGATAATCTGATCCACGAAAAGGGTGACACCTTGTATGTCATCCATGTCAAGCCCTCTCAGGGCGATGAGAGTCGCAGCACTCTTTGGTCTTCCACCGGATCACCTCTGATTCCATTCACGGAGTTCCGTGAAAAATTGGTGATGGAGAAGTACGACGTCAAGGTTGATGCAGAGGTCTTGGATTTGCTTGACACAGTGTCTAGGCAGAAACATGCGACGGTGGTGGCAAAGATCTACTGGGGAGATGCAAGAGAGAAACTTTGTGGAGCAGCTGAAGAACTAAAACTCGACTGCTTGGTCCTTGGCAGCAGGGGCCTTGGTTCCATTCAAAGGGTGCTGCTGGGAAGTGTGTCCAGCTACGTTATGGCAAATGCAATCTGCCCTGTTACCATTGTCAAGGATCATATTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

163

Amino Acids

17.89

Weight (kDa)

7.67

Isoelectric Point (pI)

25.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 158 4.1e-30 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016294)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37220
malus_domestica MD03G1082800.v1.1
prunus_persica Prupe.6G067100_v2.0.a1
pyrus_communis pycom03g06590 pycom11g07560
rosa_chinensis RchiOBHm_Chr5g0066971
rosa_laevigata RLG00000035897
rosa_multiflora Rmu_sc0008378.1_g000004
rosa_roxburghii Rroxscaffold_1G00014160
rosa_rugosa Rorug05G0380100
rosa_samantha Rh5AG439800 Rh5BG456800 Rh5CG478900 Rh5DG471600
rosa_wichuraiana Rw5G041130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 371
AatII GACGTC 1 cut(s) 234
AclWI GGATC 3 cut(s) 79, 181, 483
AcoI YGGCCR 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 3 cut(s) 94, 134, 405
AgsI TTSAA 1 cut(s) 404
AhdI GACNNNNNGTC 1 cut(s) 271
AluBI AGCT 3 cut(s) 55, 347, 432
AluI AGCT 3 cut(s) 55, 347, 432
AlwI GGATC 3 cut(s) 79, 181, 483
AoxI GGCC 3 cut(s) 27, 69, 388
ApeKI GCWGC 4 cut(s) 150, 344, 381, 412
AspS9I GGNCC 3 cut(s) 69, 373, 388
AsuHPI GGTGA 3 cut(s) 110, 168, 226
AvaII GGWCC 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 156
BbvI GCAGC 4 cut(s) 162, 356, 393, 399
BccI CCATC 2 cut(s) 80, 211
BceAI ACGGC 1 cut(s) 14
BfaI CTAG 1 cut(s) 276
BglII AGATCT 1 cut(s) 306
BisI GCNGC 4 cut(s) 151, 345, 382, 413
BlsI GCNGC 4 cut(s) 152, 346, 383, 414
Bme18I GGWCC 1 cut(s) 373
BmeRI GACNNNNNGTC 1 cut(s) 271
BmgT120I GGNCC 3 cut(s) 69, 373, 388
BmiI GGNNCC 2 cut(s) 389, 397
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 38, 232, 310
BmuI ACTGGG 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 156
Bsa29I ATCGAT 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 376, 391
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 134, 405
Bse1I ACTGG 1 cut(s) 317
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 2 cut(s) 376, 391
BseGI GGATG 2 cut(s) 53, 114
BseLI CCNNNNNNNGG 3 cut(s) 94, 134, 405
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 4 cut(s) 162, 356, 393, 399
BseYI CCCAGC 1 cut(s) 415
BshFI GGCC 3 cut(s) 29, 71, 390
BshVI ATCGAT 1 cut(s) 75
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 3 cut(s) 94, 134, 405
BsnI GGCC 3 cut(s) 29, 71, 390
Bsp143I GATC 4 cut(s) 84, 173, 306, 475
BspANI GGCC 3 cut(s) 29, 71, 390
BspCNI CTCAG 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 389, 397
BspPI GGATC 3 cut(s) 79, 181, 483
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 376, 391
BssMI GATC 4 cut(s) 84, 173, 306, 475
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 2 cut(s) 376, 391
Bst4CI ACNGT 2 cut(s) 271, 295
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 53, 57
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 53, 114
BstKTI GATC 4 cut(s) 87, 176, 309, 478
BstMBI GATC 4 cut(s) 84, 173, 306, 475
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstNSI RCATGY 1 cut(s) 290
BstV1I GCAGC 4 cut(s) 162, 356, 393, 399
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 3 cut(s) 29, 71, 390
BsuTUI ATCGAT 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 53, 114
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 2 cut(s) 53, 57
Cfr13I GGNCC 3 cut(s) 69, 373, 388
ClaI ATCGAT 1 cut(s) 75
Csp6I GTAC 1 cut(s) 226
CviAII CATG 2 cut(s) 119, 287
CviJI RGCY 7 cut(s) 29, 55, 71, 127, 347, 390, 432
CviKI_1 RGCY 7 cut(s) 29, 55, 71, 127, 347, 390, 432
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 132
DpnI GATC 4 cut(s) 86, 175, 308, 477
DpnII GATC 4 cut(s) 84, 173, 306, 475
DrdI GACNNNNNNGTC 1 cut(s) 371
DriI GACNNNNNGTC 1 cut(s) 271
DseDI GACNNNNNNGTC 1 cut(s) 371
EaeI YGGCCR 1 cut(s) 27
Eam1105I GACNNNNNGTC 1 cut(s) 271
Eco130I CCWWGG 2 cut(s) 376, 391
Eco47I GGWCC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 388
EcoT14I CCWWGG 2 cut(s) 376, 391
ErhI CCWWGG 2 cut(s) 376, 391
FaeI CATG 2 cut(s) 122, 290
FaiI YATR 5 cut(s) 111, 120, 288, 440, 480
FatI CATG 2 cut(s) 118, 286
Fnu4HI GCNGC 4 cut(s) 151, 345, 382, 413
FokI GGATG 2 cut(s) 60, 101
Fsp4HI GCNGC 4 cut(s) 151, 345, 382, 413
FspBI CTAG 1 cut(s) 276
GluI GCNGC 4 cut(s) 151, 345, 382, 413
GsaI CCCAGC 1 cut(s) 419
HaeIII GGCC 3 cut(s) 29, 71, 390
HapII CCGG 1 cut(s) 171
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 2 cut(s) 122, 290
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 145, 184
HpaII CCGG 1 cut(s) 171
HphI GGTGA 3 cut(s) 110, 168, 226
Hpy188I TCNGA 2 cut(s) 84, 183
Hpy99I CGWCG 2 cut(s) 233, 295
HpyCH4III ACNGT 2 cut(s) 271, 295
HpyCH4IV ACGT 2 cut(s) 231, 435
HpyCH4V TGCA 4 cut(s) 51, 245, 323, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 2 cut(s) 231, 435
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 2 cut(s) 122, 290
Kzo9I GATC 4 cut(s) 84, 173, 306, 475
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 7 cut(s) 119, 184, 298, 370, 401, 442, 471
Lsp1109I GCAGC 4 cut(s) 162, 356, 393, 399
LweI GCATC 3 cut(s) 38, 232, 310
MaeI CTAG 1 cut(s) 276
MaeII ACGT 2 cut(s) 231, 435
MaeIII GTNAC 2 cut(s) 98, 460
MalI GATC 4 cut(s) 86, 175, 308, 477
MboI GATC 4 cut(s) 84, 173, 306, 475
MboII GAAGA 2 cut(s) 156, 362
MflI RGATCY 1 cut(s) 306
MluCI AATT 1 cut(s) 209
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 3 cut(s) 139, 189, 241
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 387
NdeII GATC 4 cut(s) 84, 173, 306, 475
NlaIII CATG 2 cut(s) 122, 290
NlaIV GGNNCC 2 cut(s) 389, 397
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 4 cut(s) 152, 346, 383, 414
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 415
PspN4I GGNNCC 2 cut(s) 389, 397
PspPI GGNCC 3 cut(s) 69, 373, 388
PsuI RGATCY 1 cut(s) 306
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SatI GCNGC 4 cut(s) 151, 345, 382, 413
Sau3AI GATC 4 cut(s) 84, 173, 306, 475
Sau96I GGNCC 3 cut(s) 69, 373, 388
SchI GAGTC 1 cut(s) 154
SetI ASST 9 cut(s) 57, 107, 181, 234, 240, 252, 349, 434, 438
SfaNI GCATC 3 cut(s) 38, 232, 310
SinI GGWCC 1 cut(s) 373
Sse9I AATT 1 cut(s) 209
SspMI CTAG 1 cut(s) 276
StyI CCWWGG 2 cut(s) 376, 391
TaaI ACNGT 2 cut(s) 271, 295
TaiI ACGT 2 cut(s) 234, 438
TaqI TCGA 2 cut(s) 75, 363
TasI AATT 1 cut(s) 209
TfiI GAWTC 1 cut(s) 184
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 4 cut(s) 150, 344, 381, 412
Tsp45I GTSAC 1 cut(s) 98
TspGWI ACGGA 2 cut(s) 191, 209
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 373
XceI RCATGY 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XspI CTAG 1 cut(s) 276
ZraI GACGTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.